mRNA_P-wetherbeei_contig15538.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15538.2.1
Unique NamemRNA_P-wetherbeei_contig15538.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15538.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15538contigP-wetherbeei_contig15538:6..1600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1595
Hectar predicted targeting categoryother localisation
Exons1
Cds size882
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.2072587-UTR-P-wetherbeei_contig15538:5..2051683186059.2072587-UTR-P-wetherbeei_contig15538:5..205Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15538 6..205 -
1683186059.2273393-UTR-P-wetherbeei_contig15538:1087..16001683186059.2273393-UTR-P-wetherbeei_contig15538:1087..1600Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15538 1088..1600 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.218159-CDS-P-wetherbeei_contig15538:205..10871683186059.218159-CDS-P-wetherbeei_contig15538:205..1087Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15538 206..1087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15538.2.1prot_P-wetherbeei_contig15538.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15538 206..1087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15538.2.1

>prot_P-wetherbeei_contig15538.2.1 ID=prot_P-wetherbeei_contig15538.2.1|Name=mRNA_P-wetherbeei_contig15538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=294bp
MLYLSDNSQGNKRAPSLMSACLFLEVLPADEWTSAAAALISTGLTAVGMF
TAPNTAGCARRRPGLAAGLHAMRTVPGLCHRHAALLPRPAAVRHGGGAQT
LCGRAAACHSAAAVRSGKHVGASRLRWSRHGSCWLGGSCRGRRCCGRGGG
RDDGRRTRAAEEPRGAPQRRRPQVAGWRRWWQCRCCLRSLGRQGWCCRRR
RSRCNRRAKRPAPGEDPFLRIPRGAFDFASGCRLDRYGRRFSGRRCRRCH
RRAVVLGGENKRQQRFWTRAGSGGIGGRRCGSHRRSRWRLRQW*
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mRNA from alignment at P-wetherbeei_contig15538:6..1600-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15538.2.1 ID=mRNA_P-wetherbeei_contig15538.2.1|Name=mRNA_P-wetherbeei_contig15538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1595bp|location=Sequence derived from alignment at P-wetherbeei_contig15538:6..1600- (Phaeothamnion wetherbeei SAG_119_79)
CGACGCCAGCACGGCGCCGCGGAGCCCGGGGCGGGCAGCGGCGGCCGGCG
CCGGCCGCGGCTTTGGAATCGGCGCGGTCAAGGTGACGACGGCGGCCTTC
GAAATTGACGCCTGCGGCGGCGCTGGCCGGGTTGTTCTTCTCTTCGGAGA
CGACGGTGTTTGCGGCGGCGGGGACGGCAGGAACGCTCTCGGACATGGCG
CGGCGGCAGCTACTGTGGCCTGGAGCGGCAACTTTCGAAGAAGCAGCGGC
GGCGACGGCTACGGCTGCAGCGACGGGAGCAAAGAAAGGGGCGGCGGCGG
CGCTGTATCCGGCCCCCTCGGCGGCGACGGCGGAGCGGGGACCAGCGAAC
CGTGGGGTAGGGCGGAGGTCTGGTTCCAAGACCTGGCCTGCGACTGGCAC
TACGTCTGCCCGTCTTTCGCACATTACTTTCGGCTGGCAGTGAGTCAGAT
GGAGAGCGTTGTGTGCCGGTTTGTGCACCGAGTGGGAGGTCGGCTCCCCT
CATCTCGGGGTAAATGTTGTATCTCTCGGACAATTCTCAAGGAAATAAGC
GTGCGCCCAGTCTTATGTCGGCGTGTCTGTTTCTGGAAGTTCTCCCTGCG
GACGAATGGACATCTGCTGCAGCTGCTCTTATTTCCACCGGTTTAACAGC
CGTGGGGATGTTCACTGCACCAAACACCGCAGGTTGCGCACGTCGGCGTC
CTGGGCTGGCAGCTGGCCTACACGCCATGCGGACCGTGCCCGGCCTCTGT
CACCGTCATGCGGCGCTTCTGCCCCGGCCGGCTGCGGTTCGACACGGTGG
AGGCGCGCAAACACTTTGCGGACGAGCTGCAGCATGCCACTCTGCGGCAG
CCGTGCGGAGCGGCAAACACGTCGGCGCCTCCCGCCTGCGCTGGAGCCGA
CATGGCAGCTGCTGGCTCGGCGGCAGCTGCAGAGGCAGGCGCTGCTGCGG
CAGGGGCGGCGGGAGGGACGACGGCCGGCGGACGCGGGCGGCAGAAGAAC
CGCGCGGAGCACCGCAGCGGCGCCGGCCACAAGTCGCAGGCTGGCGGCGG
TGGTGGCAGTGCCGATGCTGCCTCCGGAGCCTCGGACGACAGGGATGGTG
CTGCCGGCGGCGCCGCAGCCGCTGTAACCGCCGCGCGAAACGGCCTGCAC
CGGGCGAGGACCCCTTCCTACGGATACCGCGGGGTGCGTTCGACTTCGCT
TCCGGATGCCGCCTCGACAGATATGGCAGGAGGTTCTCCGGGCGCCGCTG
TCGCCGCTGTCACCGCCGCGCCGTCGTTCTCGGCGGCGAGAACAAGCGCC
AACAACGGTTTTGGACTCGGGCCGGAAGCGGCGGCATCGGCGGCCGCCGT
TGCGGCAGCCACCGGAGATCGAGGTGGCGGTTACGGCAGTGGTAACGGAC
AAACGCGCATGCTTTCGGCCCGTGGAAGCGCACGACTGAGCCGGGCAGGC
GGCGAAGTGGGCAGTGGCGGGGATGCCGCGGCTGGAAGAGGCGGCACGTC
CTTCTCTGCGAGCAGCCCGGTGCCGGCCAAACGAACATTAGGGCTTGGTC
GGGCCGCAAGCACTGACTAAATTATACACACACCTCTTACTATGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15538:6..1600-

>mRNA_P-wetherbeei_contig15538.2.1 ID=mRNA_P-wetherbeei_contig15538.2.1|Name=mRNA_P-wetherbeei_contig15538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=882bp|location=Sequence derived from alignment at P-wetherbeei_contig15538:6..1600- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTGTATCTCTCGGACAATTCTCAAGGAAATAAGCGTGCGCCCAGTCT
TATGTCGGCGTGTCTGTTTCTGGAAGTTCTCCCTGCGGACGAATGGACAT
CTGCTGCAGCTGCTCTTATTTCCACCGGTTTAACAGCCGTGGGGATGTTC
ACTGCACCAAACACCGCAGGTTGCGCACGTCGGCGTCCTGGGCTGGCAGC
TGGCCTACACGCCATGCGGACCGTGCCCGGCCTCTGTCACCGTCATGCGG
CGCTTCTGCCCCGGCCGGCTGCGGTTCGACACGGTGGAGGCGCGCAAACA
CTTTGCGGACGAGCTGCAGCATGCCACTCTGCGGCAGCCGTGCGGAGCGG
CAAACACGTCGGCGCCTCCCGCCTGCGCTGGAGCCGACATGGCAGCTGCT
GGCTCGGCGGCAGCTGCAGAGGCAGGCGCTGCTGCGGCAGGGGCGGCGGG
AGGGACGACGGCCGGCGGACGCGGGCGGCAGAAGAACCGCGCGGAGCACC
GCAGCGGCGCCGGCCACAAGTCGCAGGCTGGCGGCGGTGGTGGCAGTGCC
GATGCTGCCTCCGGAGCCTCGGACGACAGGGATGGTGCTGCCGGCGGCGC
CGCAGCCGCTGTAACCGCCGCGCGAAACGGCCTGCACCGGGCGAGGACCC
CTTCCTACGGATACCGCGGGGTGCGTTCGACTTCGCTTCCGGATGCCGCC
TCGACAGATATGGCAGGAGGTTCTCCGGGCGCCGCTGTCGCCGCTGTCAC
CGCCGCGCCGTCGTTCTCGGCGGCGAGAACAAGCGCCAACAACGGTTTTG
GACTCGGGCCGGAAGCGGCGGCATCGGCGGCCGCCGTTGCGGCAGCCACC
GGAGATCGAGGTGGCGGTTACGGCAGTGGTAA
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