mRNA_P-wetherbeei_contig15537.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15537.1.1
Unique NamemRNA_P-wetherbeei_contig15537.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15537.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15537contigP-wetherbeei_contig15537:3..1592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog9986.ENSOCUP00000011710
Preferred nameASB3
PFAMsAnk_2,Ank_3,Ank_4,SOCS_box
Model size1249
Max annot lvl33208|Metazoa
KEGG koko:K10325
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0031625,GO:0032446,GO:0032991,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Exons2
Evalue0.00011
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota,39JVB@33154|Opisthokonta,3BJQ0@33208|Metazoa,3CXAM@33213|Bilateria,48AB5@7711|Chordata,490N8@7742|Vertebrata,3JDE8@40674|Mammalia,35EVD@314146|Euarchontoglires
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-03_004020.1
DescriptionAnkyrin repeat and SOCS box
Cds size1248
COG categoryS
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.1621585-CDS-P-wetherbeei_contig15537:2..3861683186059.1621585-CDS-P-wetherbeei_contig15537:2..386Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15537 3..386 +
1683186059.1759436-CDS-P-wetherbeei_contig15537:728..15921683186059.1759436-CDS-P-wetherbeei_contig15537:728..1592Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15537 729..1592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15537.1.1prot_P-wetherbeei_contig15537.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15537 3..1592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15537.1.1

>prot_P-wetherbeei_contig15537.1.1 ID=prot_P-wetherbeei_contig15537.1.1|Name=mRNA_P-wetherbeei_contig15537.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=416bp
PFGSQSIRGGSGNAVGGGSGGSGGSVASGRSIDGFRDPLRPSSGAAAGTA
AAAAAALCGSSGGGGGSRSGGVNGSCQPVAAARYRRSSAHQVVLMDLSTW
TQLHMACFQGDADRTAKLLARGAYTEHKIEHDYTPLLLAAQNGHGAVMEA
LLKAGADVEARTDRAFTPLLIAAKNGHGGAVRRLLARGADAAAANDRGYT
ALHLAVQNDRADVCQALLDALVDEEADNGEESRGGGGDGGGGGSGGNGKG
SDGVSVAAAIAAIEGSKGGEVGSSGGPGGVAGGAIATDGTATATSDTRKS
RKLGRFDLEAATDQGFTALLVAAQAGHERLCQMLLDAGASPAAANDEGCT
ALHLAAERPGGAALLELLLDHGGADIDARSATQDTSLALASYFGRADAVA
ALLARGAGVAIPDEDG
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mRNA from alignment at P-wetherbeei_contig15537:3..1592+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15537.1.1 ID=mRNA_P-wetherbeei_contig15537.1.1|Name=mRNA_P-wetherbeei_contig15537.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1590bp|location=Sequence derived from alignment at P-wetherbeei_contig15537:3..1592+ (Phaeothamnion wetherbeei SAG_119_79)
CCGTTCGGGAGCCAGAGCATCCGGGGCGGGAGCGGCAACGCTGTCGGCGG
AGGCAGCGGCGGCAGCGGTGGCAGCGTGGCGAGCGGTCGCAGCATCGATG
GCTTCCGCGACCCTCTTCGACCGTCTTCTGGTGCTGCTGCAGGAACCGCC
GCCGCCGCCGCCGCTGCTCTCTGTGGCAGTAGCGGTGGCGGTGGCGGTAG
CAGGAGCGGCGGGGTCAATGGCAGTTGCCAGCCTGTTGCGGCTGCGCGAT
ACCGGCGGTCGAGCGCCCACCAGGTGGTACTTATGGACCTGTCGACGTGG
ACGCAGCTGCACATGGCGTGCTTCCAGGGAGACGCCGACCGGACCGCCAA
GCTTCTTGCCCGCGGAGCCTACACGGAGCATAAGGTGAGCGCTGCGAAAA
TGCCGGATACAAGTCCTCGCTTGCTTTTGCGCAGCTATAAAAAAATTGAG
GCCATCGCACCTTCGTGGCTTCTTAGGCTTTAAGCGGTTGCTGCTGCTTG
GTGTGAGGGCAGAGCGACCCCCCTGTCTCCTTTATTCCTGCTCTGGCGCA
ACTTGGCATGCGGAAAATGCCTTGGAAATCGCAGCTTTCAAATTATATGT
GCGCCGCGTGACAGCCCTATTCATATTCGCTGCCCATGCACCTTCTCCTT
CAATGTTTCCCACCAGAACCTCCACTGTCAACACCGTTTCCACCGTTACC
GTTTACCGCCACCTCCGCCCGGGCAGATCGAACACGACTACACGCCGCTC
CTGCTGGCCGCCCAGAACGGCCACGGCGCCGTCATGGAGGCGCTCCTCAA
GGCCGGCGCCGATGTCGAAGCGCGCACCGACCGCGCCTTCACACCCTTGC
TCATCGCCGCCAAGAACGGTCACGGTGGCGCTGTCCGCCGGCTCCTGGCC
CGCGGCGCCGACGCCGCCGCCGCCAACGACCGCGGCTACACGGCGCTCCA
TTTGGCGGTGCAGAACGACCGCGCGGATGTCTGTCAGGCGCTCCTGGACG
CGTTGGTGGACGAAGAGGCGGACAACGGCGAGGAGAGCAGAGGCGGCGGC
GGCGACGGCGGCGGCGGGGGCAGCGGCGGTAATGGGAAGGGCAGCGACGG
GGTTTCGGTCGCCGCCGCCATTGCCGCCATCGAGGGCAGCAAGGGCGGCG
AGGTGGGCAGCAGTGGCGGCCCCGGCGGCGTCGCTGGCGGCGCCATTGCT
ACGGACGGCACGGCCACTGCCACCAGCGACACCCGCAAGAGCCGCAAGCT
GGGCAGGTTCGACCTGGAGGCGGCGACGGACCAGGGCTTCACGGCGCTGC
TGGTGGCGGCGCAGGCCGGCCACGAGCGGCTCTGCCAGATGCTGCTGGAC
GCCGGCGCCTCCCCCGCCGCCGCCAACGACGAGGGTTGCACCGCCCTCCA
TCTCGCCGCCGAGCGTCCCGGTGGCGCCGCGCTGCTTGAGCTGCTCCTCG
ACCACGGTGGCGCCGACATTGACGCCCGCTCTGCCACGCAGGACACGTCG
CTGGCGCTCGCATCTTATTTCGGACGCGCTGACGCCGTGGCGGCGTTATT
GGCGCGCGGCGCCGGCGTGGCGATTCCGGACGAGGACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15537:3..1592+

>mRNA_P-wetherbeei_contig15537.1.1 ID=mRNA_P-wetherbeei_contig15537.1.1|Name=mRNA_P-wetherbeei_contig15537.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1248bp|location=Sequence derived from alignment at P-wetherbeei_contig15537:3..1592+ (Phaeothamnion wetherbeei SAG_119_79)
CCGTTCGGGAGCCAGAGCATCCGGGGCGGGAGCGGCAACGCTGTCGGCGG
AGGCAGCGGCGGCAGCGGTGGCAGCGTGGCGAGCGGTCGCAGCATCGATG
GCTTCCGCGACCCTCTTCGACCGTCTTCTGGTGCTGCTGCAGGAACCGCC
GCCGCCGCCGCCGCTGCTCTCTGTGGCAGTAGCGGTGGCGGTGGCGGTAG
CAGGAGCGGCGGGGTCAATGGCAGTTGCCAGCCTGTTGCGGCTGCGCGAT
ACCGGCGGTCGAGCGCCCACCAGGTGGTACTTATGGACCTGTCGACGTGG
ACGCAGCTGCACATGGCGTGCTTCCAGGGAGACGCCGACCGGACCGCCAA
GCTTCTTGCCCGCGGAGCCTACACGGAGCATAAGATCGAACACGACTACA
CGCCGCTCCTGCTGGCCGCCCAGAACGGCCACGGCGCCGTCATGGAGGCG
CTCCTCAAGGCCGGCGCCGATGTCGAAGCGCGCACCGACCGCGCCTTCAC
ACCCTTGCTCATCGCCGCCAAGAACGGTCACGGTGGCGCTGTCCGCCGGC
TCCTGGCCCGCGGCGCCGACGCCGCCGCCGCCAACGACCGCGGCTACACG
GCGCTCCATTTGGCGGTGCAGAACGACCGCGCGGATGTCTGTCAGGCGCT
CCTGGACGCGTTGGTGGACGAAGAGGCGGACAACGGCGAGGAGAGCAGAG
GCGGCGGCGGCGACGGCGGCGGCGGGGGCAGCGGCGGTAATGGGAAGGGC
AGCGACGGGGTTTCGGTCGCCGCCGCCATTGCCGCCATCGAGGGCAGCAA
GGGCGGCGAGGTGGGCAGCAGTGGCGGCCCCGGCGGCGTCGCTGGCGGCG
CCATTGCTACGGACGGCACGGCCACTGCCACCAGCGACACCCGCAAGAGC
CGCAAGCTGGGCAGGTTCGACCTGGAGGCGGCGACGGACCAGGGCTTCAC
GGCGCTGCTGGTGGCGGCGCAGGCCGGCCACGAGCGGCTCTGCCAGATGC
TGCTGGACGCCGGCGCCTCCCCCGCCGCCGCCAACGACGAGGGTTGCACC
GCCCTCCATCTCGCCGCCGAGCGTCCCGGTGGCGCCGCGCTGCTTGAGCT
GCTCCTCGACCACGGTGGCGCCGACATTGACGCCCGCTCTGCCACGCAGG
ACACGTCGCTGGCGCTCGCATCTTATTTCGGACGCGCTGACGCCGTGGCG
GCGTTATTGGCGCGCGGCGCCGGCGTGGCGATTCCGGACGAGGACGGC
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