mRNA_P-wetherbeei_contig15534.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15534.1.1
Unique NamemRNA_P-wetherbeei_contig15534.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15534.1.1 vs. uniprot
Match: A0A6G6WT70_9HYPH (Hemin uptake protein HemP n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6WT70_9HYPH)

HSP 1 Score: 59.7 bits (143), Expect = 2.150e-10
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   28 NLPPPKERPTLGIAPKTQPFSHYTSNDLFKGQSEILIEHQGAEYRLRITRSGGLILNK 201
            N P P++ P    +   +  + Y+S DLF+ ++EI IEHQG  YRLRITRSGGL+LNK
Sbjct:    8 NEPAPQKTPAAYESEAAKGETTYSSRDLFRDKTEIRIEHQGEMYRLRITRSGGLLLNK 65          
BLAST of mRNA_P-wetherbeei_contig15534.1.1 vs. uniprot
Match: UPI0010FA609E (hemin uptake protein HemP n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI0010FA609E)

HSP 1 Score: 58.2 bits (139), Expect = 8.730e-10
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   34 PPPKERPTLGIAPKTQPFSHYTSNDLFKGQSEILIEHQGAEYRLRITRSGGLILNK 201
            P P++ P           + Y+S DLF+ ++EI IEHQG  YRLRITRSGGL+LNK
Sbjct:   10 PAPQKAPAAYEGETANGAATYSSRDLFRDKTEIRIEHQGEMYRLRITRSGGLLLNK 65          
BLAST of mRNA_P-wetherbeei_contig15534.1.1 vs. uniprot
Match: UPI001580D707 (hemin uptake protein HemP n=1 Tax=Martelella limonii TaxID=1647649 RepID=UPI001580D707)

HSP 1 Score: 56.2 bits (134), Expect = 4.170e-9
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1
Query:  100 SNDLFKGQSEILIEHQGAEYRLRITRSGGLILNK 201
            S DLFKG+SEI+I HQGA+YR++ITR G LILNK
Sbjct:   24 SEDLFKGRSEIVIRHQGADYRMKITRQGKLILNK 57          
BLAST of mRNA_P-wetherbeei_contig15534.1.1 vs. uniprot
Match: A0A222IMZ0_RHIML (Hemin uptake protein HemP n=5 Tax=Rhizobium meliloti TaxID=382 RepID=A0A222IMZ0_RHIML)

HSP 1 Score: 54.7 bits (130), Expect = 1.330e-8
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   64 IAPKTQPFSHYTSNDLFKGQSEILIEHQGAEYRLRITRSGGLILNK 201
            +AP  +P     S+DLF+G +EILI H GA YR++ITR G LILNK
Sbjct:    1 MAPLNRPQPIVESHDLFRGHNEILISHDGAIYRMKITRQGKLILNK 46          
BLAST of mRNA_P-wetherbeei_contig15534.1.1 vs. uniprot
Match: UPI000464B0EF (hemin uptake protein HemP n=1 Tax=Aliihoeflea sp. 2WW TaxID=1381123 RepID=UPI000464B0EF)

HSP 1 Score: 55.1 bits (131), Expect = 1.370e-8
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1
Query:   91 HYTSNDLFKGQSEILIEHQGAEYRLRITRSGGLILNK 201
            H  S DLF+G++EI IEH+GA YRL+ITR G LILNK
Sbjct:   27 HVQSRDLFEGRTEICIEHEGAVYRLKITRQGKLILNK 63          
BLAST of mRNA_P-wetherbeei_contig15534.1.1 vs. uniprot
Match: UPI000462BF2F (Hemin uptake protein HemP n=1 Tax=Sinorhizobium medicae TaxID=110321 RepID=UPI000462BF2F)

HSP 1 Score: 54.7 bits (130), Expect = 1.820e-8
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   46 ERPTLGIAPKTQPFSHYTSNDLFKGQSEILIEHQGAEYRLRITRSGGLILNK 201
            ER     AP  +      S DLF+GQSEILI H GA YR++ITR G LILNK
Sbjct:    9 ERSPQAAAPVDRTQRIVESRDLFRGQSEILISHDGAIYRMKITRQGKLILNK 60          
BLAST of mRNA_P-wetherbeei_contig15534.1.1 vs. uniprot
Match: A0A370X2F3_9GAMM (Hemin uptake protein HemP n=2 Tax=Dyella psychrodurans TaxID=1927960 RepID=A0A370X2F3_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 2.090e-8
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 MTSKTITISNLPPPKERPTLGIAPKTQPFSHYTSNDLFKGQSEILIEHQGAEYRLRITRSGGLILNK 201
            M++ T+T+S   PP   PT    P T P    +S  L  G+ E++I+H G+EY LR+TR+G LIL K
Sbjct:    1 MSASTLTLSRPTPPPMLPTTDTVPVT-PVRRISSQRLLAGERELVIQHLGSEYHLRLTRNGKLILTK 66          
BLAST of mRNA_P-wetherbeei_contig15534.1.1 vs. uniprot
Match: A0A1M5PDP8_9GAMM (Hemin uptake protein hemP n=1 Tax=Hydrocarboniphaga daqingensis TaxID=490188 RepID=A0A1M5PDP8_9GAMM)

HSP 1 Score: 54.3 bits (129), Expect = 2.770e-8
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   55 TLGIAPKTQPFSHYT------SNDLFKGQSEILIEHQGAEYRLRITRSGGLILNK 201
            T+ +  + QP S  T      S DLF+G  E++IEHQG EYRLR+TR+  LILNK
Sbjct:    9 TMHLRSRPQPVSRSTHQPRLNSQDLFRGTHELIIEHQGQEYRLRLTRNDKLILNK 63          
BLAST of mRNA_P-wetherbeei_contig15534.1.1 vs. uniprot
Match: A0A6G1WED7_9HYPH (Hemin uptake protein HemP n=3 Tax=Sinorhizobium medicae TaxID=110321 RepID=A0A6G1WED7_9HYPH)

HSP 1 Score: 54.7 bits (130), Expect = 3.060e-8
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   46 ERPTLGIAPKTQPFSHYTSNDLFKGQSEILIEHQGAEYRLRITRSGGLILNK 201
            ER     AP  +      S DLF+GQSEILI H GA YR++ITR G LILNK
Sbjct:   31 ERSPQAAAPVDRTQRIVESRDLFRGQSEILISHDGAIYRMKITRQGKLILNK 82          
BLAST of mRNA_P-wetherbeei_contig15534.1.1 vs. uniprot
Match: G9A985_RHIFH (Uncharacterized protein n=5 Tax=Rhizobium fredii TaxID=380 RepID=G9A985_RHIFH)

HSP 1 Score: 54.7 bits (130), Expect = 3.060e-8
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    7 SKTITISNLPPPKERPTLGIAPKTQPFSHYTSNDLFKGQSEILIEHQGAEYRLRITRSGGLILNK 201
            ++T+T ++   P+  P      ++QP     S++LF+G SEILI H GA YR+RITR G LILNK
Sbjct:   20 AETVTPNDPDTPQSSPAPRATHRSQPI--VDSHELFRGASEILISHDGAIYRMRITRQGKLILNK 82          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15534.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G6WT70_9HYPH2.150e-1051.72Hemin uptake protein HemP n=1 Tax=Nordella sp. HKS... [more]
UPI0010FA609E8.730e-1051.79hemin uptake protein HemP n=1 Tax=Aestuariivirga s... [more]
UPI001580D7074.170e-973.53hemin uptake protein HemP n=1 Tax=Martelella limon... [more]
A0A222IMZ0_RHIML1.330e-856.52Hemin uptake protein HemP n=5 Tax=Rhizobium melilo... [more]
UPI000464B0EF1.370e-867.57hemin uptake protein HemP n=1 Tax=Aliihoeflea sp. ... [more]
UPI000462BF2F1.820e-855.77Hemin uptake protein HemP n=1 Tax=Sinorhizobium me... [more]
A0A370X2F3_9GAMM2.090e-843.28Hemin uptake protein HemP n=2 Tax=Dyella psychrodu... [more]
A0A1M5PDP8_9GAMM2.770e-850.91Hemin uptake protein hemP n=1 Tax=Hydrocarboniphag... [more]
A0A6G1WED7_9HYPH3.060e-855.77Hemin uptake protein HemP n=3 Tax=Sinorhizobium me... [more]
G9A985_RHIFH3.060e-846.15Uncharacterized protein n=5 Tax=Rhizobium fredii T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15534contigP-wetherbeei_contig15534:835..1038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1117943.SFHH103_02320
Preferred namehmuP
PFAMshemP
Model size204
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.01e-09
EggNOG OGsCOG4256@1|root,COG4256@2|Bacteria,1NGJH@1224|Proteobacteria,2UY9T@28211|Alphaproteobacteria,4BGVY@82115|Rhizobiaceae
DescriptionHemin uptake protein hemP
Cds size204
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186059.1030824-CDS-P-wetherbeei_contig15534:834..10381683186059.1030824-CDS-P-wetherbeei_contig15534:834..1038Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15534 835..1038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15534.1.1prot_P-wetherbeei_contig15534.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15534 835..1038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15534.1.1

>prot_P-wetherbeei_contig15534.1.1 ID=prot_P-wetherbeei_contig15534.1.1|Name=mRNA_P-wetherbeei_contig15534.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
MTSKTITISNLPPPKERPTLGIAPKTQPFSHYTSNDLFKGQSEILIEHQG
AEYRLRITRSGGLILNK*
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mRNA from alignment at P-wetherbeei_contig15534:835..1038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15534.1.1 ID=mRNA_P-wetherbeei_contig15534.1.1|Name=mRNA_P-wetherbeei_contig15534.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig15534:835..1038+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAGCAAAACAATTACCATTTCCAACCTCCCCCCGCCCAAGGAGCG CCCTACCCTTGGGATTGCGCCCAAGACCCAGCCCTTCTCACATTATACCA GCAACGACCTGTTCAAGGGCCAAAGTGAAATCCTGATCGAGCACCAAGGT GCCGAATACCGCCTGCGGATCACGCGTTCCGGCGGACTGATTCTCAACAA ATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15534:835..1038+

>mRNA_P-wetherbeei_contig15534.1.1 ID=mRNA_P-wetherbeei_contig15534.1.1|Name=mRNA_P-wetherbeei_contig15534.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig15534:835..1038+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAGCAAAACAATTACCATTTCCAACCTCCCCCCGCCCAAGGAGCG
CCCTACCCTTGGGATTGCGCCCAAGACCCAGCCCTTCTCACATTATACCA
GCAACGACCTGTTCAAGGGCCAAAGTGAAATCCTGATCGAGCACCAAGGT
GCCGAATACCGCCTGCGGATCACGCGTTCCGGCGGACTGATTCTCAACAA
ATAG
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