mRNA_P-wetherbeei_contig15528.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15528.1.1
Unique NamemRNA_P-wetherbeei_contig15528.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: A0A537P9J1_9PROT (30S ribosomal protein S12 n=7 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A537P9J1_9PROT)

HSP 1 Score: 232 bits (592), Expect = 4.290e-77
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 
Query:   16 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 375
            MPTINQLIRKPRS PSYR+KVPAMQ+CPQKRGVCTRVYTTTPKKPNSALRKVA+VRLTNGFEV SYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG+LDTQGVVKRRQRRSKYGAK
Sbjct:    1 MPTINQLIRKPRSAPSYRSKVPAMQACPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGVLDTQGVVKRRQRRSKYGAK 120
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BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: E2CNX8_9HYPH (30S ribosomal protein S12 n=2 Tax=Stappiaceae TaxID=2821832 RepID=E2CNX8_9HYPH)

HSP 1 Score: 224 bits (571), Expect = 2.750e-73
Identity = 109/125 (87.20%), Postives = 117/125 (93.60%), Query Frame = 1 
Query:    1 GRSGPMPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 375
            G+   MPTINQLIRKPR VP+ RNKVPAM++CPQKRGVCTRVYTTTPKKPNSALRKVAK+RLTNGFEV+ YIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG+LDTQGV  R+QRRSKYGAK
Sbjct:   38 GKGHNMPTINQLIRKPRKVPAKRNKVPAMEACPQKRGVCTRVYTTTPKKPNSALRKVAKIRLTNGFEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGVLDTQGVKDRKQRRSKYGAK 162
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BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: F2J5S8_POLGS (30S ribosomal protein S12 n=27 Tax=Alphaproteobacteria TaxID=28211 RepID=F2J5S8_POLGS)

HSP 1 Score: 220 bits (560), Expect = 3.260e-72
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:   16 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 375
            MPTINQLIRKPR  P  RNKVPAM++CPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEV+ YIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG+LDTQGV  R+QRRSKYGAK
Sbjct:    1 MPTINQLIRKPRKDPPKRNKVPAMEACPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGVLDTQGVKDRKQRRSKYGAK 120
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BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: A0A1Y6CR00_9HYPH (30S ribosomal protein S12 n=5 Tax=root TaxID=1 RepID=A0A1Y6CR00_9HYPH)

HSP 1 Score: 220 bits (560), Expect = 3.260e-72
Identity = 108/120 (90.00%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:   16 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 375
            MPTINQLIRKPR     RNKVPAMQ+CPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNG+EVV+YIPGEGHNLQEHSVV+IRGGRVKDLPGVRYHIIRG LDTQG+ KRRQRRSKYGAK
Sbjct:    1 MPTINQLIRKPRQAQPTRNKVPAMQACPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGYEVVTYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGALDTQGIAKRRQRRSKYGAK 120
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BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: A0A2E6GJL9_9PROT (30S ribosomal protein S12 n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GJL9_9PROT)

HSP 1 Score: 220 bits (560), Expect = 3.260e-72
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:   16 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 375
            MPT+NQLIRKPR  P  RNKVPAMQ CPQKRGVCTRVYTTTPKKPNSALRKVA+VRLTNG EV+SYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGV  RRQRRSKYGAK
Sbjct:    1 MPTVNQLIRKPRKRPIVRNKVPAMQGCPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGAEVISYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVTDRRQRRSKYGAK 120
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BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: RS12_RHORT (30S ribosomal protein S12 n=67 Tax=Bacteria TaxID=2 RepID=RS12_RHORT)

HSP 1 Score: 219 bits (557), Expect = 9.340e-72
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:   16 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 375
            MPTINQLIRKPR     RNKVPAMQ+CPQKRGVCTRVYTTTPKKPNSALRKVA+VRLTNGFEV SYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG+LDTQGV  RRQRRSKYGAK
Sbjct:    1 MPTINQLIRKPRKAVVKRNKVPAMQACPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGVLDTQGVKDRRQRRSKYGAK 120
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BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: A0A2N5B4M4_RHILI (30S ribosomal protein S12 n=4 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2N5B4M4_RHILI)

HSP 1 Score: 219 bits (557), Expect = 9.340e-72
Identity = 106/120 (88.33%), Postives = 113/120 (94.17%), Query Frame = 1 
Query:   16 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 375
            MPT+NQLIRKPR VP+ RNKVPAMQ  PQKRGVCTRVYTTTPKKPNSALRKVAK+RLTNGFEV+ YIPGEGHNLQEHSVVMIRGGRVKDLPGVRYH+IRG+LDTQGV  R+QRRSKYGAK
Sbjct:    1 MPTVNQLIRKPRQVPATRNKVPAMQQNPQKRGVCTRVYTTTPKKPNSALRKVAKIRLTNGFEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHVIRGVLDTQGVKNRKQRRSKYGAK 120
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BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: E3HZR9_RHOVT (30S ribosomal protein S12 n=4 Tax=Bacteria TaxID=2 RepID=E3HZR9_RHOVT)

HSP 1 Score: 218 bits (556), Expect = 1.330e-71
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 1 
Query:   16 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 375
            MPTI QLIRKPR  P  RNKVPAM  CPQKRGVCTRVYTTTPKKPNSALRKVA+VRLTNGFEV SYIPGEGHNLQEHSVV+IRGGRVKDLPGVRYHIIRG+LDTQGV KRRQRRSKYGAK
Sbjct:    1 MPTIQQLIRKPRVAPVKRNKVPAMTECPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTSYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGVLDTQGVAKRRQRRSKYGAK 120
[Close]
BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: A0A1E4C938_9HYPH (30S ribosomal protein S12 n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A1E4C938_9HYPH)

HSP 1 Score: 218 bits (555), Expect = 1.890e-71
Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:   16 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 375
            MPTI QLIRKPR  P  RNKVPAM++CPQKRGVCTRVYTTTPKKPNSALRKVAK+RLTNGFEV+ YIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG+LDTQGV  R+QRRSKYGAK
Sbjct:    1 MPTIQQLIRKPRVKPRERNKVPAMEACPQKRGVCTRVYTTTPKKPNSALRKVAKIRLTNGFEVIGYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGVLDTQGVANRKQRRSKYGAK 120
[Close]
BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Match: RS12_MAGSA (30S ribosomal protein S12 n=12 Tax=Rhodospirillales TaxID=204441 RepID=RS12_MAGSA)

HSP 1 Score: 216 bits (551), Expect = 7.680e-71
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 1 
Query:   16 MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGILDTQGVVKRRQRRSKYGAK 375
            MPTINQLIRKPR   + RNKVPAM++CPQKRGVCTRVYTTTPKKPNSALRKVA+VRLTNGFEV SYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG LDTQGV  RRQRRSKYGAK
Sbjct:    1 MPTINQLIRKPRQPVAARNKVPAMEACPQKRGVCTRVYTTTPKKPNSALRKVARVRLTNGFEVTSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTQGVKDRRQRRSKYGAK 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15528.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537P9J1_9PROT4.290e-7795.0030S ribosomal protein S12 n=7 Tax=Alphaproteobacte... [more]
E2CNX8_9HYPH2.750e-7387.2030S ribosomal protein S12 n=2 Tax=Stappiaceae TaxI... [more]
F2J5S8_POLGS3.260e-7290.0030S ribosomal protein S12 n=27 Tax=Alphaproteobact... [more]
A0A1Y6CR00_9HYPH3.260e-7290.0030S ribosomal protein S12 n=5 Tax=root TaxID=1 Rep... [more]
A0A2E6GJL9_9PROT3.260e-7290.8330S ribosomal protein S12 n=2 Tax=Rhodospirillacea... [more]
RS12_RHORT9.340e-7290.8330S ribosomal protein S12 n=67 Tax=Bacteria TaxID=... [more]
A0A2N5B4M4_RHILI9.340e-7288.3330S ribosomal protein S12 n=4 Tax=Hyphomicrobiales... [more]
E3HZR9_RHOVT1.330e-7190.0030S ribosomal protein S12 n=4 Tax=Bacteria TaxID=2... [more]
A0A1E4C938_9HYPH1.890e-7188.3330S ribosomal protein S12 n=3 Tax=Proteobacteria T... [more]
RS12_MAGSA7.680e-7190.0030S ribosomal protein S12 n=12 Tax=Rhodospirillale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15528contigP-wetherbeei_contig15528:3..377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog744980.TRICHSKD4_4991
Preferred namerpsL
PFAMsRibosom_S12_S23
Model size375
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02950
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue6.08e-73
EggNOG OGsCOG0048@1|root,COG0048@2|Bacteria,1RCWY@1224|Proteobacteria,2U70K@28211|Alphaproteobacteria
DescriptionInteracts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
Cds size360
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186058.9505675-CDS-P-wetherbeei_contig15528:2..3621683186058.9505675-CDS-P-wetherbeei_contig15528:2..362Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15528 3..362 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186058.9593902-UTR-P-wetherbeei_contig15528:362..3771683186058.9593902-UTR-P-wetherbeei_contig15528:362..377Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15528 363..377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15528.1.1prot_P-wetherbeei_contig15528.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15528 3..362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15528.1.1

>prot_P-wetherbeei_contig15528.1.1 ID=prot_P-wetherbeei_contig15528.1.1|Name=mRNA_P-wetherbeei_contig15528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
MPTINQLIRKPRSVPSYRNKVPAMQSCPQKRGVCTRVYTTTPKKPNSALR
KVAKVRLTNGFEVVSYIPGEGHNLQEHSVVMIRGGRVKDLPGVRYHIIRG
ILDTQGVVKRRQRRSKYGAK
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mRNA from alignment at P-wetherbeei_contig15528:3..377-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15528.1.1 ID=mRNA_P-wetherbeei_contig15528.1.1|Name=mRNA_P-wetherbeei_contig15528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig15528:3..377- (Phaeothamnion wetherbeei SAG_119_79)
GGTAGATCAGGCCCGATGCCGACAATCAACCAGCTCATTCGTAAGCCACG
CAGCGTTCCGAGTTATCGCAACAAGGTCCCCGCGATGCAGTCTTGCCCGC
AAAAACGCGGCGTTTGCACGCGCGTTTACACCACAACGCCGAAGAAGCCG
AACTCGGCTTTGCGGAAAGTCGCCAAGGTGCGCCTTACCAATGGCTTCGA
AGTTGTGAGCTATATCCCGGGCGAAGGCCATAACCTGCAGGAACACTCTG
TGGTGATGATCCGTGGCGGCCGCGTCAAGGATCTGCCAGGTGTCCGCTAT
CACATCATCCGCGGTATTCTCGATACGCAAGGCGTCGTCAAGCGCCGCCA
GCGCCGGTCGAAATACGGCGCGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15528:3..377-

>mRNA_P-wetherbeei_contig15528.1.1 ID=mRNA_P-wetherbeei_contig15528.1.1|Name=mRNA_P-wetherbeei_contig15528.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig15528:3..377- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGACAATCAACCAGCTCATTCGTAAGCCACGCAGCGTTCCGAGTTA
TCGCAACAAGGTCCCCGCGATGCAGTCTTGCCCGCAAAAACGCGGCGTTT
GCACGCGCGTTTACACCACAACGCCGAAGAAGCCGAACTCGGCTTTGCGG
AAAGTCGCCAAGGTGCGCCTTACCAATGGCTTCGAAGTTGTGAGCTATAT
CCCGGGCGAAGGCCATAACCTGCAGGAACACTCTGTGGTGATGATCCGTG
GCGGCCGCGTCAAGGATCTGCCAGGTGTCCGCTATCACATCATCCGCGGT
ATTCTCGATACGCAAGGCGTCGTCAAGCGCCGCCAGCGCCGGTCGAAATA
CGGCGCGAAG
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