mRNA_P-wetherbeei_contig15524.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15524.1.1
Unique NamemRNA_P-wetherbeei_contig15524.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15524.1.1 vs. uniprot
Match: A0A6H5K2S2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2S2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.280e-16
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 3 
Query:  543 VADRVISEYERLLAAVPTLAQHINRTQVDTDAMATALAGRVTHLVEGYRQLNELAAQAPVGILSAASDYARQL 761
            VAD V++EYE+LLAA+PT+A+H+ + Q+DT+ MA  L  RV  LV+GYR+LNEL  QAP  +  AAS+YA+ L
Sbjct:   45 VADAVVTEYEKLLAAIPTMARHMGKLQLDTEVMAEGLERRVRSLVDGYRELNELVDQAPARVSDAASEYAQAL 117
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BLAST of mRNA_P-wetherbeei_contig15524.1.1 vs. uniprot
Match: D8LDL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL5_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.330e-16
Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 3 
Query:  543 VADRVISEYERLLAAVPTLAQHINRTQVDTDAMATALAGRVTHLVEGYRQLNELAAQAPVGILSAASDYA-----RQLREHPLLAEAGRHGLGGSGXXXXXXXXXXXXXXXXXXXXXXXESGSSNVAETLHQQLFEMREARLALD 962
            VAD V++EYE+LLAAVPT+A+H+ + Q+DT+ MA  L  RV  LV+GYR+LNEL  QAPV +  AAS+YA     R+ +  PLL +    G G  G                        S  +   E +H++LF ++EA++ALD
Sbjct:   95 VADAVVTEYEKLLAAVPTMARHMGKLQLDTEVMAEGLERRVRSLVDGYRELNELVDQAPVRVSDAASEYAQALGLRRTQGSPLLGD----GAGMDG------------------------SDEALDVEGIHRELFALKEAKIALD 211
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15524.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2S2_9PHAE2.280e-1656.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDL5_ECTSI3.330e-1640.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15524contigP-wetherbeei_contig15524:216..1522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1308
Hectar predicted targeting categoryother localisation
Exons1
Cds size1194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186058.8465536-CDS-P-wetherbeei_contig15524:215..14091683186058.8465536-CDS-P-wetherbeei_contig15524:215..1409Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15524 216..1409 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186058.8541212-UTR-P-wetherbeei_contig15524:1409..15221683186058.8541212-UTR-P-wetherbeei_contig15524:1409..1522Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15524 1410..1522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15524.1.1prot_P-wetherbeei_contig15524.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15524 216..1409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15524.1.1

>prot_P-wetherbeei_contig15524.1.1 ID=prot_P-wetherbeei_contig15524.1.1|Name=mRNA_P-wetherbeei_contig15524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=398bp
MPPRKATTATPAVHGSVIGSPPIRARGRPVALPNRRWPAADTVKRNEIMG
QVKATSATPAAPINAQKEKAFAATAAGAPRAREGEAPLPWGQLSTATAPA
SSPAAPEALVAAALAAPAAHAGSSPAFSGISGSPSAGTAVVFGVADRVIS
EYERLLAAVPTLAQHINRTQVDTDAMATALAGRVTHLVEGYRQLNELAAQ
APVGILSAASDYARQLREHPLLAEAGRHGLGGSGGGGSSGSGGGGRRGGG
GGSGGGAESGSSNVAETLHQQLFEMREARLALDREAGGNGGGGSGSSSGV
SKPETARASTGKRRAAARAESDYDGAGRRGAAGVGSIPAATHATLPPANP
KAPLFVPRFPGYTNCQAFGGAPAGPGGGGFFDGFEGAGSRSAGTAATA
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mRNA from alignment at P-wetherbeei_contig15524:216..1522-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15524.1.1 ID=mRNA_P-wetherbeei_contig15524.1.1|Name=mRNA_P-wetherbeei_contig15524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1307bp|location=Sequence derived from alignment at P-wetherbeei_contig15524:216..1522- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTTTCTTGGATGTCGGCACCCTTTATCTCTTTTCTTATGATATCCGC
CCCAAGAACATCGTCTTTCCGACGCTGGAGAGAGCCTGAAATTTGAAATC
ACAAATCTCAAAGATGCCGCCGCGAAAGGCGACGACCGCGACTCCAGCGG
TCCACGGCAGCGTCATCGGGAGCCCGCCGATCAGGGCGCGAGGCCGGCCC
GTGGCGCTGCCGAATCGGAGGTGGCCTGCTGCGGACACCGTGAAGCGAAA
CGAGATAATGGGCCAAGTCAAAGCAACGTCTGCGACGCCTGCTGCACCGA
TCAACGCGCAGAAGGAGAAGGCCTTTGCAGCTACTGCAGCTGGAGCGCCG
AGAGCCCGCGAAGGTGAAGCGCCGTTGCCTTGGGGCCAACTGAGCACGGC
AACTGCTCCTGCGTCTAGCCCTGCTGCTCCCGAGGCCCTTGTTGCCGCTG
CCCTAGCTGCTCCCGCTGCTCACGCTGGGAGCAGCCCAGCCTTCTCCGGA
ATCAGCGGCAGCCCCTCCGCGGGCACCGCCGTTGTCTTTGGCGTAGCTGA
CCGCGTCATATCCGAGTATGAACGGCTGCTGGCGGCCGTGCCTACGCTGG
CGCAGCACATCAACCGCACGCAGGTCGATACCGACGCCATGGCGACAGCG
CTCGCCGGCCGCGTCACGCACCTGGTGGAAGGCTACCGCCAGCTGAACGA
GCTGGCGGCGCAGGCGCCCGTCGGCATCCTGAGCGCCGCTTCCGACTACG
CGCGCCAGCTGCGGGAGCACCCCCTACTCGCAGAGGCTGGCCGCCACGGA
TTGGGCGGCAGCGGTGGCGGGGGGAGCAGTGGCAGTGGCGGCGGCGGAAG
AAGGGGCGGCGGCGGCGGCAGCGGTGGCGGCGCTGAAAGCGGCAGCAGCA
ACGTGGCCGAAACCTTGCACCAGCAGCTTTTTGAGATGCGAGAGGCGCGC
CTTGCGTTGGATCGCGAGGCCGGCGGCAACGGCGGCGGTGGCAGCGGCAG
CAGCAGCGGCGTCAGCAAACCAGAAACGGCTCGCGCTTCGACCGGGAAAA
GGCGCGCCGCGGCGCGTGCAGAATCGGACTACGACGGAGCCGGACGGCGC
GGGGCGGCGGGCGTGGGAAGTATCCCAGCTGCGACACACGCGACGCTGCC
GCCAGCCAACCCAAAGGCGCCGCTCTTCGTTCCTCGCTTTCCGGGCTACA
CCAACTGCCAGGCGTTCGGCGGCGCGCCGGCAGGCCCAGGAGGAGGTGGA
TTCTTTGACGGCTTCGAAGGAGCCGGCAGCCGTTCAGCGGGGACAGCAGC
AACAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15524:216..1522-

>mRNA_P-wetherbeei_contig15524.1.1 ID=mRNA_P-wetherbeei_contig15524.1.1|Name=mRNA_P-wetherbeei_contig15524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1194bp|location=Sequence derived from alignment at P-wetherbeei_contig15524:216..1522- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGCGAAAGGCGACGACCGCGACTCCAGCGGTCCACGGCAGCGT
CATCGGGAGCCCGCCGATCAGGGCGCGAGGCCGGCCCGTGGCGCTGCCGA
ATCGGAGGTGGCCTGCTGCGGACACCGTGAAGCGAAACGAGATAATGGGC
CAAGTCAAAGCAACGTCTGCGACGCCTGCTGCACCGATCAACGCGCAGAA
GGAGAAGGCCTTTGCAGCTACTGCAGCTGGAGCGCCGAGAGCCCGCGAAG
GTGAAGCGCCGTTGCCTTGGGGCCAACTGAGCACGGCAACTGCTCCTGCG
TCTAGCCCTGCTGCTCCCGAGGCCCTTGTTGCCGCTGCCCTAGCTGCTCC
CGCTGCTCACGCTGGGAGCAGCCCAGCCTTCTCCGGAATCAGCGGCAGCC
CCTCCGCGGGCACCGCCGTTGTCTTTGGCGTAGCTGACCGCGTCATATCC
GAGTATGAACGGCTGCTGGCGGCCGTGCCTACGCTGGCGCAGCACATCAA
CCGCACGCAGGTCGATACCGACGCCATGGCGACAGCGCTCGCCGGCCGCG
TCACGCACCTGGTGGAAGGCTACCGCCAGCTGAACGAGCTGGCGGCGCAG
GCGCCCGTCGGCATCCTGAGCGCCGCTTCCGACTACGCGCGCCAGCTGCG
GGAGCACCCCCTACTCGCAGAGGCTGGCCGCCACGGATTGGGCGGCAGCG
GTGGCGGGGGGAGCAGTGGCAGTGGCGGCGGCGGAAGAAGGGGCGGCGGC
GGCGGCAGCGGTGGCGGCGCTGAAAGCGGCAGCAGCAACGTGGCCGAAAC
CTTGCACCAGCAGCTTTTTGAGATGCGAGAGGCGCGCCTTGCGTTGGATC
GCGAGGCCGGCGGCAACGGCGGCGGTGGCAGCGGCAGCAGCAGCGGCGTC
AGCAAACCAGAAACGGCTCGCGCTTCGACCGGGAAAAGGCGCGCCGCGGC
GCGTGCAGAATCGGACTACGACGGAGCCGGACGGCGCGGGGCGGCGGGCG
TGGGAAGTATCCCAGCTGCGACACACGCGACGCTGCCGCCAGCCAACCCA
AAGGCGCCGCTCTTCGTTCCTCGCTTTCCGGGCTACACCAACTGCCAGGC
GTTCGGCGGCGCGCCGGCAGGCCCAGGAGGAGGTGGATTCTTTGACGGCT
TCGAAGGAGCCGGCAGCCGTTCAGCGGGGACAGCAGCAACAGCG
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