mRNA_P-wetherbeei_contig15519.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig15519.1.1 vs. uniprot
Match: A0A140GUT3_9HYPH (Nucleic-acid-binding protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A140GUT3_9HYPH) HSP 1 Score: 272 bits (696), Expect = 6.200e-90 Identity = 138/210 (65.71%), Postives = 162/210 (77.14%), Query Frame = 1
Query: 1 GPRRNGPRAERFCVATRTVKPVEELIRFVVSPDGVVPDLKCKLPGRGIWVTATKAAVSDAIAHKAFARGFKRDVRVPPDLADLTERLMTRAVLDALAIAGKSGRVVAGFTKVEAALGRDRVAALLHATDAGHDGVAKLKGPLLLRPDADRIGVVREFTSAQLDLALSRSNVVHAALLAGPASDTFLGRFERLERFRTGKSGESGNESGNG 630
GPR+ GP ER C TRTVKPVE+LIRFVV PDGVVPDLK KLPGRG+W+TA + + DA+ FARGFKRD+R +L D TE ++ RAVLDALAIAGK+G V+ GF KVEAA+ R+ + L+HA+DAGHDGVAKL G L RPD DRI ++ FT+AQLDLAL RSNVVHAALLAGPA+DT L R RLERFR+G G+SG GNG
Sbjct: 13 GPRKGGPGTERLCAVTRTVKPVEDLIRFVVGPDGVVPDLKRKLPGRGLWITADRLTLKDAVTRNVFARGFKRDIRATAELIDQTELMLQRAVLDALAIAGKAGSVLTGFAKVEAAIAREPIVGLIHASDAGHDGVAKLAGALRHRPDCDRILAIKTFTTAQLDLALGRSNVVHAALLAGPANDTVLARLARLERFRSGVPGDSG---GNG 219
BLAST of mRNA_P-wetherbeei_contig15519.1.1 vs. uniprot
Match: A0A6N7GTM7_9HYPH (RNA-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GTM7_9HYPH) HSP 1 Score: 232 bits (591), Expect = 4.850e-74 Identity = 127/200 (63.50%), Postives = 146/200 (73.00%), Query Frame = 1
Query: 1 GPRRNGPRAERFCVATRTVKPVEELIRFVVSPDGV-VPDLKCKLPGRGIWVTATKAAVSDAIAHKAFARGFKRDVRVPPDLADLTERLMTRAVLDALAIAGKSGRVVAGFTKVEAALGRDRVAALLHATDAGHDGVAKLKGPLLL-RPDADRIGVVREFTSAQLDLALSRSNVVHAALLAGPASDTFLGRFERLERFRTG 594
GPR+ ER C AT TV+PV++++RFVVSP+G VPDLK +LPGRG+WVTAT++A+ AIA KAFAR FKRDVR PDL TER++ RA LDALAIA K+GRVV GF KVEAAL D AAL+HA+DA DGV KL R D + VV F SAQLDLA+ RSNVVHAALL GP S TFL R RLERFRTG
Sbjct: 13 GPRKAAHGTERLCAATGTVRPVDDMLRFVVSPEGTAVPDLKRRLPGRGVWVTATRSALGQAIARKAFARSFKRDVRTTPDLVQTTERMLERAALDALAIAYKAGRVVVGFAKVEAALLHDNAAALVHASDAAPDGVRKLDSAARRNREDHRPVAVVDAFASAQLDLAMGRSNVVHAALLGGPESRTFLARAARLERFRTG 212
BLAST of mRNA_P-wetherbeei_contig15519.1.1 vs. uniprot
Match: A0A1Q7BPA1_9PROT (YlxR domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7BPA1_9PROT) HSP 1 Score: 233 bits (594), Expect = 4.950e-74 Identity = 123/199 (61.81%), Postives = 145/199 (72.86%), Query Frame = 1
Query: 1 GPRRNGPRAERFCVATRTVKPVEELIRFVVSPDGV-VPDLKCKLPGRGIWVTATKAAVSDAIAHKAFARGFKRDVRVPPDLADLTERLMTRAVLDALAIAGKSGRVVAGFTKVEAALGRDRVAALLHATDAGHDGVAKLKGPLLLRPDADRIGVVREFTSAQLDLALSRSNVVHAALLAGPASDTFLGRFERLERFRTG 594
GP + P +RFC A+ VKPV+E+IRFVV PDG VPDLK +LPGRGIW+TAT+ A+ AIA KAFAR FKRDVR+ PDL + TERL+ RA LDALAI K+G++ GF +AAL R RV ALL+A +A DG KL L R DA I V+ FTSAQLDLAL RSNV+HAALLAGP S+TFL R RL+ FRTG
Sbjct: 13 GPHKRAPGTQRFCAASGAVKPVDEMIRFVVGPDGAAVPDLKRRLPGRGIWITATRQALRSAIARKAFARAFKRDVRLAPDLVETTERLIERAALDALAICHKAGKLAIGFANADAALARARVVALLNAAEAAPDGTRKLTAALQRRADAAGIAVIDAFTSAQLDLALGRSNVIHAALLAGPESETFLARTARLDYFRTG 211
BLAST of mRNA_P-wetherbeei_contig15519.1.1 vs. uniprot
Match: A0A537SVY0_9PROT (RNA-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SVY0_9PROT) HSP 1 Score: 229 bits (583), Expect = 1.060e-72 Identity = 126/202 (62.38%), Postives = 142/202 (70.30%), Query Frame = 1
Query: 1 GPRRNGPRAERFCVATRTVKPVEELIRFVVSPDG-VVPDLKCKLPGRGIWVTATKAAVSDAIAHKAFARGFKRDVRVPPDLADLTERLMTRAVLDALAIAGKSGRVVAGFTKVEAALGRDRVAALLHATDAGHDGVAKLKGPLLLRPDADRIGVVREFTSAQLDLALSRSNVVHAALLAGPASDTFLGRFERLERFRTGKSG 603
G R++ P +R C T V+P+EEL RFVV+PDG VVPDLK +LPGRGIW+TAT+ A+ A+A FARGFKRDVRV DL TE L+ RA LDALAI K+G+V GF VEA L R RV ALL+A A DGV KL L R D I VV FTSAQLDLAL RSNVVHAALLAGP S+TFL R RLERFRTG G
Sbjct: 13 GTRKSAPGTQRLCAVTGEVRPIEELTRFVVAPDGSVVPDLKRRLPGRGIWITATRHALRAAMARNTFARGFKRDVRVASDLVATTEGLIERAALDALAICHKAGKVAIGFANVEAVLARARVVALLNAAQAAPDGVRKLAAALHHRADVAEIAVVDAFTSAQLDLALGRSNVVHAALLAGPESETFLARHARLERFRTGSEG 214
BLAST of mRNA_P-wetherbeei_contig15519.1.1 vs. uniprot
Match: A0A1Q7B6Y0_9PROT (YlxR domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 13_2_20CM_2_64_7 TaxID=1803507 RepID=A0A1Q7B6Y0_9PROT) HSP 1 Score: 227 bits (579), Expect = 4.590e-72 Identity = 120/199 (60.30%), Postives = 141/199 (70.85%), Query Frame = 1
Query: 1 GPRRNGPRAERFCVATRTVKPVEELIRFVVSPDGV-VPDLKCKLPGRGIWVTATKAAVSDAIAHKAFARGFKRDVRVPPDLADLTERLMTRAVLDALAIAGKSGRVVAGFTKVEAALGRDRVAALLHATDAGHDGVAKLKGPLLLRPDADRIGVVREFTSAQLDLALSRSNVVHAALLAGPASDTFLGRFERLERFRTG 594
GPR+ +RFC AT ++P++E+IRFV+ PDG VPDLK +LPGRGIW+TAT+ A+ AI KAFAR FKRDVR+ PD + TERL+ R LDALAI K+G V GF VEA L R V ALL A +A DGV KL L R DA I VV FTSAQLDLAL R+NV+HAALLAGP S+TFL R RL+RFRTG
Sbjct: 13 GPRKRAAGTQRFCAATGAIRPIDEMIRFVIGPDGTPVPDLKRRLPGRGIWITATREALRAAITRKAFARAFKRDVRLAPDFVEATERLIERTALDALAICHKAGNVAIGFANVEAVLARAHVVALLDAVEAAPDGVKKLAAVLRRRADAAEIVVVDTFTSAQLDLALGRANVIHAALLAGPESETFLARAARLQRFRTG 211
BLAST of mRNA_P-wetherbeei_contig15519.1.1 vs. uniprot
Match: A0A6L5FLB4_9HYPH (RNA-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FLB4_9HYPH) HSP 1 Score: 224 bits (572), Expect = 5.470e-71 Identity = 125/202 (61.88%), Postives = 146/202 (72.28%), Query Frame = 1
Query: 1 GPRRNGPRAERFCVATRTVKPVEELIRFVVSPDG-VVPDLKCKLPGRGIWVTATKAAVSDAIAHKAFARGFKRDVRVPPDLADLTERLMTRAVLDALAIAGKSGRVVAGFTKVEAALGRDRVAALLHATDAGHDGVAKLKGPLLLR-PDADRIGVVREFTSAQLDLALSRSNVVHAALLAGPASDTFLGRFERLERFRTGKS 600
GPR + ER C+ATRTVKP+ E+IRFVV+PDG VVPDLK KLPGRGIWVTAT+ A++ A+ KA GFKRDVR L LT+ L+ RAVLDALAI GK+ V GF KV+AAL R+ V ALLHA+ A DGV KL L R DA+R+ +V + +S QLDLAL+R NVVHAALLAG SDTFL R RL RFRTG S
Sbjct: 15 GPRSDQSVTERMCIATRTVKPIGEMIRFVVAPDGTVVPDLKRKLPGRGIWVTATRDALAQAVKRKAIGTGFKRDVRADAGLVVLTDGLLERAVLDALAICGKASLAVMGFAKVDAALAREPVVALLHASGAAADGVRKLDAALQRRFDDANRVRIVTDLSSDQLDLALARPNVVHAALLAGSVSDTFLARHARLTRFRTGSS 216
BLAST of mRNA_P-wetherbeei_contig15519.1.1 vs. uniprot
Match: A0A537Q1Y3_9PROT (RNA-binding protein n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537Q1Y3_9PROT) HSP 1 Score: 224 bits (570), Expect = 7.960e-71 Identity = 123/201 (61.19%), Postives = 145/201 (72.14%), Query Frame = 1
Query: 1 GPRRNGPRAERFCVATRTVKPVEELIRFVVSPDG-VVPDLKCKLPGRGIWVTATKAAVSDAIAHKAFARGFKRDVRVPPDLADLTERLMTRAVLDALAIAGKSGRVVAGFTKVEAALGRDRVAALLHATDAGHDGVAKLKGPLLLRP--DADRIGVVREFTSAQLDLALSRSNVVHAALLAGPASDTFLGRFERLERFRTG 594
GPR+ ER CVATR VKP ++IRFVV PDG VV DLK KLPGRG+WVTAT+ A+++AI K AR FKR+VRV PDLAD E L+ R+ LDALAIA K+G + AGF KVEAAL R V AL+HA DAG DG+AK+ R A+RI V+ F+SAQLDLAL R+NV+HAALLA A D+FL R LERFRTG
Sbjct: 11 GPRKKAAATERLCVATRRVKPTTDMIRFVVGPDGQVVADLKRKLPGRGVWVTATRQALAEAIRRKTLARAFKREVRVEPDLADRVEALLERSALDALAIARKAGALAAGFAKVEAALQRAGVVALIHAADAGPDGLAKIAAAARRRTGSQAERIPVIELFSSAQLDLALGRANVIHAALLADRAGDSFLARCRSLERFRTG 211
BLAST of mRNA_P-wetherbeei_contig15519.1.1 vs. uniprot
Match: A0A1W6ZR39_9HYPH (YlxR domain-containing protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZR39_9HYPH) HSP 1 Score: 218 bits (555), Expect = 2.270e-68 Identity = 117/197 (59.39%), Postives = 140/197 (71.07%), Query Frame = 1
Query: 16 GPRAERFCVATRTVKPVEELIRFVVSPDG-VVPDLKCKLPGRGIWVTATKAAVSDAIAHKAFARGFKRDVRVPPDLADLTERLMTRAVLDALAIAGKSGRVVAGFTKVEAALGRDRVAALLHATDAGHDGVAKLKGPLLLRPDAD--RIGVVREFTSAQLDLALSRSNVVHAALLAGPASDTFLGRFERLERFRTGK 597
G ER CV TR ++P+ +LIRFVV PDG VPD+K LPGRG+WVTAT+ AV AI K FA+GFKRDVR P+L DLT+RL+ RA LDALAIAGK+G VV GF+KVEAA+ R + LLHA+D +G K L P+ D I V+R F+ QLDLAL RSNV+HAALLAGPAS FL R R+ RFRTG+
Sbjct: 17 GAATERMCVVTREIRPIADLIRFVVGPDGNAVPDVKRNLPGRGLWVTATREAVDQAIRRKLFAKGFKRDVRSGPELTDLTDRLLERAALDALAIAGKAGEVVTGFSKVEAAIQRGGLLGLLHASDGSPEGARKATALLNRNPEDDSPEIPVIRAFSGTQLDLALGRSNVIHAALLAGPASQGFLTRCLRMMRFRTGE 213
BLAST of mRNA_P-wetherbeei_contig15519.1.1 vs. uniprot
Match: A0A363TU83_9BRAD (DNA-binding protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TU83_9BRAD) HSP 1 Score: 217 bits (552), Expect = 5.180e-68 Identity = 120/199 (60.30%), Postives = 139/199 (69.85%), Query Frame = 1
Query: 1 GPRRNGPRAERFCVATRTVKPVEELIRFVVSPDG-VVPDLKCKLPGRGIWVTATKAAVSDAIAHKAFARGFKRDVRVPPDLADLTERLMTRAVLDALAIAGKSGRVVAGFTKVEAALGRDRVAALLHATDAGHDGVAKLKGPLLLR--PDADRIGVVREFTSAQLDLALSRSNVVHAALLAGPASDTFLGRFERLERFR 588
GPR AER CVATRTV+PV ++IRFVV PDG VVPD++ +LPGRG+WVTAT+ AV +AI KAFAR FKR+VR DL + E L+ RA LDAL++A K+G V GF KVEAAL +A LLHA DAG DGV K+ R +A I VV FTS QLDLAL R NV+HAALLAGPAS FL R LERFR
Sbjct: 13 GPRSTAAGAERLCVATRTVRPVADMIRFVVGPDGAVVPDIRRRLPGRGVWVTATRQAVDEAIRRKAFARSFKREVRCAADLGAMVEGLLERAALDALSLANKAGLVAPGFGKVEAALAAAELAGLLHAADAGSDGVRKIAAAARRRFGAEAGNIPVVAAFTSVQLDLALGRPNVIHAALLAGPASKAFLARTMSLERFR 211
BLAST of mRNA_P-wetherbeei_contig15519.1.1 vs. uniprot
Match: UPI0009EBA915 (RNA-binding protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=UPI0009EBA915) HSP 1 Score: 213 bits (542), Expect = 4.940e-66 Identity = 116/198 (58.59%), Postives = 141/198 (71.21%), Query Frame = 1
Query: 25 AERFCVATRTVKPVEELIRFVVSPDG-VVPDLKCKLPGRGIWVTATKAAVSDAIAHKAFARGFKRDVRVPPDLADLTERLMTRAVLDALAIAGKSGRVVAGFTKVEAALGRDRVAALLHATDAGHDGVAKLKGPLL--LRPDADRIGVVREFTSAQLDLALSRSNVVHAALLAGPASDTFLGRFERLERFRTGKSGES 609
AERFC TR +KPV E+IRFVV P G VPD+K KLPGRGIW+TAT+ A++DA+ F RGFKRD++V +L E+L+ +A LDALAIAGK+G VVAG KVEAALG D V AL+HA DA DG KL L + P I ++ F LDLAL+RSNVVHAA+LAGPAS+TFL R RL R+R+GKS +S
Sbjct: 26 AERFCALTRELKPVAEMIRFVVGPAGDAVPDVKRKLPGRGIWITATRDALTDAVKRNVFPRGFKRDLKVSRELPAEVEQLLAKAALDALAIAGKAGNVVAGSAKVEAALGGDGVRALIHAADAAPDGKRKLNAALQRNISPGQREITLIEAFNGPDLDLALNRSNVVHAAVLAGPASETFLTRVARLTRYRSGKSPDS 223 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15519.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig15519.1.1 >prot_P-wetherbeei_contig15519.1.1 ID=prot_P-wetherbeei_contig15519.1.1|Name=mRNA_P-wetherbeei_contig15519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=215bp GPRRNGPRAERFCVATRTVKPVEELIRFVVSPDGVVPDLKCKLPGRGIWVback to top mRNA from alignment at P-wetherbeei_contig15519:3..647+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig15519.1.1 ID=mRNA_P-wetherbeei_contig15519.1.1|Name=mRNA_P-wetherbeei_contig15519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig15519:3..647+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig15519:3..647+ >mRNA_P-wetherbeei_contig15519.1.1 ID=mRNA_P-wetherbeei_contig15519.1.1|Name=mRNA_P-wetherbeei_contig15519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=645bp|location=Sequence derived from alignment at P-wetherbeei_contig15519:3..647+ (Phaeothamnion wetherbeei SAG_119_79)back to top |