mRNA_P-wetherbeei_contig1550.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1550.3.1
Unique NamemRNA_P-wetherbeei_contig1550.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1550.3.1 vs. uniprot
Match: A0A836C8N5_9STRA (Ribosomal RNA-processing protein 43 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8N5_9STRA)

HSP 1 Score: 229 bits (584), Expect = 7.920e-71
Identity = 131/280 (46.79%), Postives = 175/280 (62.50%), Query Frame = 1
Query:    1 MDVNAFDRLDPAGFYGKFIWNRIRPDGRTFHATRAVSVDLGVLSPRHAAASALARVGGTKVIAGITLLVGQPPDYAPSAGEIDVQVHLTPLSSNKFASGK-SEQAAAIDVLVKDIIVGSRAVRLADLCIESGRSAWKVCIDLVCVAHEGNVADTAALAAVAALGALRLPDTMLGDDGAVMIKEGERWFEWHCTPLWLRHIPIPLTVCVFGAAVIADPTAAEEELVDAVLTVATMAPSGEV------PGTICGLWKPGGAVVSAAQLQECLALAAAHAVRV 819
            M+V AF +LDP  FY KF+   +RPDGR     R V+V  GVL+  H AASAL  +G TKV+ GITL VGQP    P  G+++V VHLTPL S+ F+ G+ SEQA A++ L++D++  SR  R  DL IE+ R AW++CID+ C+++EGN AD A L+  A L  LRLP T++  DG V++ EGE       TPL + H+P+PLT  VF  A++ADP+  EE+LV A LTV      G+          +C + K GGA V+ A L   LAL  +HA RV
Sbjct:    1 MEVEAFQKLDPQTFYRKFLSEGVRPDGRGLQEVRDVAVSCGVLTAPHVAASALVTLGDTKVVTGITLQVGQPSQAEPGCGDVEVSVHLTPLCSSMFSVGRPSEQAQALEALIRDVLTASRPFRREDLLIEARRFAWRLCIDMYCLSYEGNAADAALLSVAACLLRLRLPPTVITPDGEVLVAEGEG------TPLPVSHVPLPLTFGVFEGALVADPSLLEEDLVAAALTVVQSLDEGKGGSGGGGAARVCAVHKAGGACVAPALLARALALGRSHAQRV 274          
BLAST of mRNA_P-wetherbeei_contig1550.3.1 vs. uniprot
Match: D7FJJ9_ECTSI (Ribosomal RNA-processing protein 43 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJJ9_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 2.950e-68
Identity = 127/271 (46.86%), Postives = 171/271 (63.10%), Query Frame = 1
Query:    1 MDVNAFDRLDPAGFYGKFIWNRIRPDGRTFHATRAVSVDLGVLSPRHAAASALARVGGTKVIAGITLLVGQPPDYAPSAGEIDVQVHLTPLSSNKFASGK-SEQAAAIDVLVKDIIVGSRAVRLADLCIESGRSAWKVCIDLVCVAHEGNVADTAALAAVAALGALRLPDTMLGDDGAVMIKEGERWFEWHCTPLWLRHIPIPLTVCVFGAAVIADPTAAEEELVDAVLTVATMAPSGEVPGTICGLWKPGGAVVSAAQLQECLALAAAHA 810
            M+V AF RLDP  FY +F+ N +RPDGR   A R +SVD+GVLS     ASAL  +G TKV+AGI+L VG P +  P  G +DV+V LTPLSS+KF+SG+ SEQA  +   VK+ IV S A+ L DL I+ G  AWK+C+D+VC++ +GN+AD   +AA+ AL  L+LP T   DD   + ++         T L +R +P+PLT  VF   +IADP+  EEEL+   +TV + +      G +CG+ KPGG+  S  QL ECL L   HA
Sbjct:    1 MEVEAFQRLDPENFYRRFVKNGVRPDGRELRAVRPISVDVGVLSEERVQASALVGLGSTKVLAGISLQVGHPSENTPMCGMLDVEVKLTPLSSSKFSSGRPSEQAHVLSTFVKNSIVESGALVLTDLAIDDGAFAWKLCMDIVCLSFDGNLADATLIAAMGALMRLQLPGTRRIDDEIFVTEDTP-------TQLVVREVPVPLTCGVFDGIIIADPSLLEEELLTTHVTVVSTS-----EGKVCGVHKPGGSCASGKQLNECLQLCQQHA 259          
BLAST of mRNA_P-wetherbeei_contig1550.3.1 vs. uniprot
Match: H3GX87_PHYRM (Ribosomal RNA-processing protein 43 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GX87_PHYRM)

HSP 1 Score: 171 bits (433), Expect = 2.500e-48
Identity = 105/268 (39.18%), Postives = 156/268 (58.21%), Query Frame = 1
Query:    1 MDVNAFDRLDPAGFYGKFIWNRIRPDGRTFHATRAVSVDLGVLSPRHAAASALARVGGTKVIAGITLLVGQPPDYAPSAGEIDVQVHLTPLSSNKFASGK-SEQAAAIDVLVKDIIVGSRAVRLADLCIESGRSAWKVCIDLVCVAHEGNVADTAALAAVAALGALRLPDTMLGD-DGAVMIKEGERWFEWHCTPLWLRHIPIPLTVCVFGAAVIADPTAAEEELVDAVLTVATMAPSGEVPGTICGLWKPGGAVVSAAQLQECLALA 798
               + + +L PA +  K + N +RPD RT  A RAV +   V+    AA+S+L ++G T V+  I L VG P    P  GEI VQVHL+PL SN+F  G+ SE++ +I   +  IIVGSR V + +L I SG++AWK+ +D+ CV H+GNV D A  + +AAL  L+LP T + + D  V I E     +   TPL + H     T  V    V+ DPT+ EE+L  AV ++     S    G +CG++K GG++V+ + +Q+C+ +A
Sbjct:   12 FSADMYRKLFPAEYMRKCLTNEVRPDSRTIEAARAVQLQTNVVHT--AASSSLVKLGKTSVLTAIKLAVGTPAVATPDQGEIAVQVHLSPLCSNRFTVGRPSEESQSIGSQLTRIIVGSRVVEMENLGIVSGQAAWKLMVDVYCVDHDGNVLDAALTSVMAALKTLKLPATSINEADNVVSIVE-----DGDATPLRVEHSAYATTFAVVDGTVLIDPTSDEEDLASAVFSL-----SYSTNGQLCGVYKAGGSIVAPSVMQQCMQIA 267          
BLAST of mRNA_P-wetherbeei_contig1550.3.1 vs. uniprot
Match: G5AAV8_PHYSP (Ribosomal RNA-processing protein 43 n=3 Tax=Phytophthora TaxID=4783 RepID=G5AAV8_PHYSP)

HSP 1 Score: 163 bits (413), Expect = 2.480e-45
Identity = 103/266 (38.72%), Postives = 153/266 (57.52%), Query Frame = 1
Query:    7 VNAFDRLDPAGFYGKFIWNRIRPDGRTFHATRAVSVDLGVLSPRHAAASALARVGGTKVIAGITLLVGQPPDYAPSAGEIDVQVHLTPLSSNKFASGK-SEQAAAIDVLVKDIIVGSRAVRLADLCIESGRSAWKVCIDLVCVAHEGNVADTAALAAVAALGALRLPDTMLGD-DGAVMIKEGERWFEWHCTPLWLRHIPIPLTVCVFGAAVIADPTAAEEELVDAVLTVATMAPSGEVPGTICGLWKPGGAVVSAAQLQECLALA 798
             + + +L PA +  K + +++RPD RT  A RAV +   V+    AA+S+L ++G T V+  I L VG P    P  GEI VQVHL+PL SN+F+ G+ SE++ +I   +  IIVGSR V +  L I  G+SAWK+ +D+ CV H+GNV D A  + +AAL  L+LP T + + D  V I   E       TPL + H     +  V   +V+ DPT+ EE+L  AV ++     S    G +CG+ K GG +V+   +Q+C+ +A
Sbjct:   15 ADMYKKLFPAEYVRKCLASKVRPDSRTIEAARAVQLQTDVVQT--AASSSLVKLGKTSVLTAIKLAVGTPAVATPDQGEIAVQVHLSPLCSNRFSVGRPSEESQSISSQLTRIIVGSRVVEMESLSIVKGQSAWKLMVDVYCVDHDGNVLDAALTSIMAALKTLKLPATSVNEADNVVSIVPDE-----DATPLRVEHCAYATSFAVVEDSVLIDPTSDEEDLASAVFSL-----SYSTNGQLCGVHKAGGTIVAPHVMQQCMQVA 268          
BLAST of mRNA_P-wetherbeei_contig1550.3.1 vs. uniprot
Match: M4BB92_HYAAE (Ribosomal RNA-processing protein 43 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BB92_HYAAE)

HSP 1 Score: 162 bits (410), Expect = 6.570e-45
Identity = 101/269 (37.55%), Postives = 151/269 (56.13%), Query Frame = 1
Query:    1 MDVNAFDRLDPAGFYGKFIWNRIRPDGRTFHATRAVSVDLGVLSPRHAAASALARVGGTKVIAGITLLVGQPPDYAPSAGEIDVQVHLTPLSSNKFASGK-SEQAAAIDVLVKDIIVGSRAVRLADLCIESGRSAWKVCIDLVCVAHEGNVADTAALAAVAALGALRLPDTMLG--DDGAVMIKEGERWFEWHCTPLWLRHIPIPLTVCVFGAAVIADPTAAEEELVDAVLTVATMAPSGEVPGTICGLWKPGGAVVSAAQLQECLALA 798
                 F RL PA +  K + + +R DGR+  ATR   +   V+    AA+S+L ++G T V+  I L VG P    P  GEI +QVHLTPL SN+F+ G+ SE+A +I   +  I++GSR V + DL I  G+S WK+ +D+ CV H+GNV D A  + +AAL  L+LP T +   D+   ++ +G+        PL +R      +  V  + V+ DPT+ EE+L  AVL++A         G ICG+ K GG +V+   +Q C+ +A
Sbjct:   11 FSAQTFKRLFPAEYARKCLQSNVRVDGRSIEATRTAQLQTNVVHT--AASSSLVKLGKTSVLTAIKLAVGTPAVATPDQGEIAIQVHLTPLCSNRFSVGRPSEEAQSIGSQLTRIVLGSRVVEMEDLSIAKGQSTWKLMVDVFCVNHDGNVLDAALASVMAALQTLKLPATSINEADNVVSIVPDGDTM------PLCVRFGAYATSFAVVDSTVLIDPTSEEEDLASAVLSIAFT-----TEGQICGVHKAGGTIVAPDVMQHCMQIA 266          
BLAST of mRNA_P-wetherbeei_contig1550.3.1 vs. uniprot
Match: A0A2P4XYR1_9STRA (Ribosomal RNA-processing protein 43 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XYR1_9STRA)

HSP 1 Score: 162 bits (409), Expect = 9.010e-45
Identity = 101/268 (37.69%), Postives = 152/268 (56.72%), Query Frame = 1
Query:    1 MDVNAFDRLDPAGFYGKFIWNRIRPDGRTFHATRAVSVDLGVLSPRHAAASALARVGGTKVIAGITLLVGQPPDYAPSAGEIDVQVHLTPLSSNKFASGK-SEQAAAIDVLVKDIIVGSRAVRLADLCIESGRSAWKVCIDLVCVAHEGNVADTAALAAVAALGALRLPDTMLGD-DGAVMIKEGERWFEWHCTPLWLRHIPIPLTVCVFGAAVIADPTAAEEELVDAVLTVATMAPSGEVPGTICGLWKPGGAVVSAAQLQECLALA 798
                 + ++ PA +  K + N++RPD RT  A+RAV +   V+    AA+S+L ++G T V+  I L VG P    P  GEI +QVHL+PL SN+F  G+ SE+A +I   +  IIVGSR V +  L I  G+SAWK+ +D+ CV H+GNV D A  + +AAL  L+LP T + + D  V I  G        TPL + H     +  +    V+ DPT+ EE+   AV ++     S    G +CG+ K GG++V+ + +Q+C+ +A
Sbjct:   10 FSAEMYRKVFPAEYMRKCLANKVRPDSRTIEASRAVQLQTNVVQT--AASSSLVKLGKTSVLTAIKLAVGTPAVATPDQGEIAIQVHLSPLCSNRFTVGRPSEEAQSIGSQLTRIIVGSRVVEMESLSIVKGQSAWKLMVDVYCVDHDGNVLDAALTSIMAALRTLKLPATSVNEADNVVSIVPGG-----DATPLRVEHGAYATSFAIVDDVVLIDPTSDEEDQATAVFSL-----SYSTNGQLCGVHKAGGSIVAPSVMQQCMHIA 265          
BLAST of mRNA_P-wetherbeei_contig1550.3.1 vs. uniprot
Match: D0N9X4_PHYIT (Ribosomal RNA-processing protein 43 n=14 Tax=Phytophthora TaxID=4783 RepID=D0N9X4_PHYIT)

HSP 1 Score: 160 bits (406), Expect = 2.730e-44
Identity = 99/269 (36.80%), Postives = 155/269 (57.62%), Query Frame = 1
Query:    1 MDVNAFDRLDPAGFYGKFIWNRIRPDGRTFHATRAVSVDLGVLSPRHAAASALARVGGTKVIAGITLLVGQPPDYAPSAGEIDVQVHLTPLSSNKFASGK-SEQAAAIDVLVKDIIVGSRAVRLADLCIESGRSAWKVCIDLVCVAHEGNVADTAALAAVAALGALRLPDTMLG--DDGAVMIKEGERWFEWHCTPLWLRHIPIPLTVCVFGAAVIADPTAAEEELVDAVLTVATMAPSGEVPGTICGLWKPGGAVVSAAQLQECLALA 798
             + + + +L PA +  K + N++RPD RT  ATRAV +   V+    AA+S+L ++G T V+  I L VG P    P  GE+ +QVHL+PL SN+F  G+ SE+A +I   +  +I GSR V +  L I  G+SAWK+ +D+  V H+GNV D A  + +AAL  L+LP T +   D+   ++ +G+       TPL + H     +  +    V+ DPT+AEE L  AV ++     S    G +CG+ K GG++V+ + +Q+C+ +A
Sbjct:   13 FNTDMYKKLFPAEYMRKCLANKVRPDTRTIEATRAVQLQTDVIQT--AASSSLVKLGKTSVLTAIKLAVGTPAVATPDQGELAIQVHLSPLCSNRFTVGRPSEEAQSIGSQLTRVIAGSRVVEMESLSIVKGQSAWKLMVDVYGVDHDGNVLDAALTSIIAALKTLKLPATSVNEVDNVVSIVPDGD------ATPLRVEHGAYATSFAMVDDVVLIDPTSAEEGLSSAVFSL-----SYSTDGQLCGVHKAGGSIVAPSVMQQCMTIA 268          
BLAST of mRNA_P-wetherbeei_contig1550.3.1 vs. uniprot
Match: A0A662XD26_9STRA (Ribosomal RNA-processing protein 43 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XD26_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.360e-44
Identity = 102/283 (36.04%), Postives = 156/283 (55.12%), Query Frame = 1
Query:    1 MDVNAFDRLDPAGFYGKFIWNRIRPDGRTFHATRAVSVDLGVLSPRHAAASALARVGGTKVIAGITLLVGQPPDYAPSAGEID---------------VQVHLTPLSSNKFASGK-SEQAAAIDVLVKDIIVGSRAVRLADLCIESGRSAWKVCIDLVCVAHEGNVADTAALAAVAALGALRLPDTMLGD-DGAVMIKEGERWFEWHCTPLWLRHIPIPLTVCVFGAAVIADPTAAEEELVDAVLTVATMAPSGEVPGTICGLWKPGGAVVSAAQLQECLALA 798
                 + +L PA +  K + +++RPD RT  A+R V +   V+    AA+S+L ++G T V+A I L VG P    P  GEI                +QVHL+PL SN+F  G+ SE+A +I   +  I+VGSR V + DL IE G+SAWK+ +D+ C+ H+GNV D A  + +AA  +LRLP   + D D  V +       +   TPL ++H     +  V    ++ DPT+ EE+L  AV ++     S    G +CG+ KPGG +V+A+ +Q+C+ +A
Sbjct:   16 FSAEMYRKLFPAEYMRKCLASKVRPDSRTIEASRPVQLQTNVIQT--AASSSLVKLGNTSVLAAIKLAVGAPAVSTPDQGEIAFVCFTCGVDSRATAAIQVHLSPLCSNRFTVGRPSEEAQSIGSQLTRIVVGSRVVEMEDLSIEKGQSAWKLMVDVYCIDHDGNVLDAALTSIMAAFKSLRLPAVSINDADHVVSVLP-----DADSTPLRMQHCAYVTSFAVIDDTLLIDPTSDEEQLASAVFSL-----SYSTNGQLCGVHKPGGVIVAASVMQQCMRVA 286          
BLAST of mRNA_P-wetherbeei_contig1550.3.1 vs. uniprot
Match: A0A3M6VDK4_9STRA (Ribosomal RNA-processing protein 43 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VDK4_9STRA)

HSP 1 Score: 157 bits (398), Expect = 3.430e-43
Identity = 98/262 (37.40%), Postives = 147/262 (56.11%), Query Frame = 1
Query:   10 NAFDRLDPAGFYGKFIWNRIRPDGRTFHATRAVSVDLGVLSPRHAAASALARVGGTKVIAGITLLVGQPPDYAPSAGEIDVQVHLTPLSSNKFASGK-SEQAAAIDVLVKDIIVGSRAVRLADLCIESGRSAWKVCIDLVCVAHEGNVADTAALAAVAALGALRLPDTMLGD-DGAVMIKEGERWFEWHCTPLWLRHIPIPLTVCVFGAAVIADPTAAEEELVDAVLTVATMAPSGEVPGTICGLWKPGGAVVSAAQLQECL 789
            + F +L P  +  K + N++R D RT  A RAV +   V+    AA+S+L ++G T V+  I L VG P    P  GEI +QVHL+PL SN+F  G+ SE+A ++   +  I +GSR V + +L I +G+SAWK+ +D+ CV H+GNV D A  + +AAL  L+LP T + + D  V I   E       TPL + H     +  V    V+ DPT+ EE+L  AV +      S    G +CG+ K GG++V+   + +C+
Sbjct:    8 DVFQKLFPVEYTHKCLMNKVRTDARTMDALRAVQLQTNVVET--AASSSLVKLGKTSVLTAIKLAVGTPAVTTPDQGEIAIQVHLSPLCSNRFTVGRPSEEAQSVSSQLTRIFMGSRVVEMENLSIVNGQSAWKLMVDVYCVDHDGNVLDAALTSIMAALKTLKLPVTSVNEADNVVSIVPNE-----DATPLRVEHCAYATSFAVVDDTVLIDPTSDEEDLASAVFSF-----SYSTNGQLCGVHKAGGSIVAPNVMHQCM 257          
BLAST of mRNA_P-wetherbeei_contig1550.3.1 vs. uniprot
Match: K3X2K7_GLOUD (Ribosomal RNA-processing protein 43 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2K7_GLOUD)

HSP 1 Score: 153 bits (386), Expect = 3.500e-41
Identity = 97/274 (35.40%), Postives = 153/274 (55.84%), Query Frame = 1
Query:    7 VNAFDRLDPAGFYGKFIWNRIRPDGRTFHATRAVSVDLGVLSPRHAAASALARVGGTKVIAGITLLVGQPPDYAPSAGEI--------DVQVHLTPLSSNKFASGK-SEQAAAIDVLVKDIIVGSRAVRLADLCIESGRSAWKVCIDLVCVAHEGNVADTAALAAVAALGALRLPDTMLGD-DGAVMIKEGERWFEWHCTPLWLRHIPIPLTVCVFGAAVIADPTAAEEELVDAVLTVATMAPSGEVPGTICGLWKPGGAVVSAAQLQECLALA 798
               + +L PA +    + + +RPD RT  A R+V +   V+    AA+S+L ++G T VIA I L VG P    P  G++         VQVHLTPL S +F  G+ SE+A +I   + +II+GSR V +++L IE G+SAW++ +D+ C+ H+GNV D + +A +AAL +L+LP  ++ + D  V I+  E       + L ++H     T  +    V+ DPT+ EEEL  A  ++     +      +CG+ KPGGA++S   L  C+ +A
Sbjct:   16 AEMYKKLFPAEYMKNCMESNVRPDSRTLEAARSVHLQTNVVHT--AASSSLVKIGNTSVIAAIKLAVGMPAVSTPDQGDLGAQLILLTSVQVHLTPLCSTRFNLGRPSEEAQSIGSQLTNIIIGSRVVEMSNLSIEKGKSAWRLMVDVYCIDHDGNVLDASLIAIMAALKSLKLPAVLISETDHIVSIQPDEE-----ASLLLMQHSAYSTTFALVNDKVLIDPTSQEEELSSASFSI-----TYNTKEQLCGVQKPGGAIISPQTLHACMQVA 277          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1550.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8N5_9STRA7.920e-7146.79Ribosomal RNA-processing protein 43 n=1 Tax=Tribon... [more]
D7FJJ9_ECTSI2.950e-6846.86Ribosomal RNA-processing protein 43 n=2 Tax=Ectoca... [more]
H3GX87_PHYRM2.500e-4839.18Ribosomal RNA-processing protein 43 n=1 Tax=Phytop... [more]
G5AAV8_PHYSP2.480e-4538.72Ribosomal RNA-processing protein 43 n=3 Tax=Phytop... [more]
M4BB92_HYAAE6.570e-4537.55Ribosomal RNA-processing protein 43 n=1 Tax=Hyalop... [more]
A0A2P4XYR1_9STRA9.010e-4537.69Ribosomal RNA-processing protein 43 n=1 Tax=Phytop... [more]
D0N9X4_PHYIT2.730e-4436.80Ribosomal RNA-processing protein 43 n=14 Tax=Phyto... [more]
A0A662XD26_9STRA3.360e-4436.04Ribosomal RNA-processing protein 43 n=2 Tax=Nothop... [more]
A0A3M6VDK4_9STRA3.430e-4337.40Ribosomal RNA-processing protein 43 n=2 Tax=Perono... [more]
K3X2K7_GLOUD3.500e-4135.40Ribosomal RNA-processing protein 43 n=1 Tax=Globis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1550contigP-wetherbeei_contig1550:4078..5504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJJ9
PFAMsRNase_PH,RNase_PH_C
Model size852
Max annot lvl2759|Eukaryota
KEGG koko:K12586
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.84e-69
EggNOG OGsCOG2123@1|root,KOG1613@2759|Eukaryota
Ec32 ortholog descriptionRrp43 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-04_006390.1
DescriptionU1 snRNA 3'-end processing
Cds size852
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186058.264358-CDS-P-wetherbeei_contig1550:4077..43581683186058.264358-CDS-P-wetherbeei_contig1550:4077..4358Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1550 4078..4358 -
1683186058.2740502-CDS-P-wetherbeei_contig1550:4580..48011683186058.2740502-CDS-P-wetherbeei_contig1550:4580..4801Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1550 4581..4801 -
1683186058.281601-CDS-P-wetherbeei_contig1550:5057..51601683186058.281601-CDS-P-wetherbeei_contig1550:5057..5160Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1550 5058..5160 -
1683186058.289336-CDS-P-wetherbeei_contig1550:5257..55041683186058.289336-CDS-P-wetherbeei_contig1550:5257..5504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1550 5258..5504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1550.3.1prot_P-wetherbeei_contig1550.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1550 4078..5504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1550.3.1

>prot_P-wetherbeei_contig1550.3.1 ID=prot_P-wetherbeei_contig1550.3.1|Name=mRNA_P-wetherbeei_contig1550.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=284bp
MDVNAFDRLDPAGFYGKFIWNRIRPDGRTFHATRAVSVDLGVLSPRHAAA
SALARVGGTKVIAGITLLVGQPPDYAPSAGEIDVQVHLTPLSSNKFASGK
SEQAAAIDVLVKDIIVGSRAVRLADLCIESGRSAWKVCIDLVCVAHEGNV
ADTAALAAVAALGALRLPDTMLGDDGAVMIKEGERWFEWHCTPLWLRHIP
IPLTVCVFGAAVIADPTAAEEELVDAVLTVATMAPSGEVPGTICGLWKPG
GAVVSAAQLQECLALAAAHAVRVSAMPAFAAAAA
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mRNA from alignment at P-wetherbeei_contig1550:4078..5504-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1550.3.1 ID=mRNA_P-wetherbeei_contig1550.3.1|Name=mRNA_P-wetherbeei_contig1550.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1427bp|location=Sequence derived from alignment at P-wetherbeei_contig1550:4078..5504- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGTGAACGCATTCGACCGGCTAGACCCGGCTGGGTTCTATGGAAA ATTCATATGGAATAGAATCAGACCAGACGGCCGCACCTTCCACGCCACGA GAGCGGTCAGCGTGGACCTCGGCGTCCTCTCGCCACGGCACGCTGCCGCC TCTGCCTTGGCCCGCGTCGGTGGCACAAAGGTGATAGCCGGGATCACGCT GCTGGTGGGGCAGCCGCCAGATTACGCGCCGTCTGCTGGCGAGATCGGTG CGTTCTTTGCTGTAAAAATGGGCGGTTTCTAATCTGCGTAATCGACGCGC CGTGACTTACTATAGAACTTCATCTTCCACCTTCGTCTTCGCAGACGTCC AGGTGCACTTGACTCCTTTGAGTTCCAACAAGTTTGCGTCGGGAAAGTCC GAGCAGGCTGCTGCCATTGACGTATTGGTCAAGGACATCATTGTAGGGTG AGCGAGACTTGGCGACGAAAGCATTGCTGGAGCGTATTTTTGCATTCCAG GTATTTTCAGATGAATATGCGGCGAAGAAAACAGGATTTGTGGTCCAGCT TTTCCATTTCTCATAACAGCAGAATTCCTGATGTCCAGGAGCCGCTGTTT TTATTTCTTGAACGTCCAACAAGAAAAAAAACCGCAGCCTCCAAACAAGA GCGGCCTGCAACCTTTCGCCAAATCAAATCTCACGTCCACCACCGCCGAA CAGGTCCCGCGCGGTCCGGCTGGCGGACCTATGCATCGAGTCCGGGCGGT CAGCCTGGAAGGTGTGCATAGACCTCGTCTGCGTGGCGCACGAGGGCAAC GTGGCGGACACGGCAGCGCTGGCAGCCGTCGCCGCCCTTGGGGCGCTGCG GCTGCCCGACACGATGCTTGGGGACGACGGCGCCGTCATGATCAAGGAAG GCGAGCGATGGTTCGAGTGGCATTGTCATTCTTCCCCGTTATTCCTCGTG CCTGTTCTTAGAAAGCTGGTTCCCGGGCTCGGTGTTGTTTATGCCGCTGA GCTTCTCTGATCAACAACTATCCTTGCTCAGTATGTTTCGTCATTTCCGA TGGTAGATGCCTAAGCGACGGCCTGCATTCTGGCTGCTTTTGCCTTCACA AACTTGCGGCTTCTTTGCATTTCCTCCGTTTCTAATACAGGCCCAGGCAC GCCGCTGTGGTTACGGCACATCCCAATCCCCCTCACCGTCTGCGTCTTCG GCGCCGCCGTCATCGCCGACCCGACCGCCGCGGAGGAGGAACTGGTGGAC GCGGTGCTCACCGTCGCCACCATGGCGCCTTCTGGGGAAGTTCCTGGCAC GATCTGTGGGCTCTGGAAACCAGGCGGCGCCGTCGTTTCGGCGGCGCAGC TGCAGGAGTGCTTGGCACTTGCGGCGGCACACGCGGTGCGGGTGTCAGCG ATGCCGGCGTTTGCGGCGGCAGCAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1550:4078..5504-

>mRNA_P-wetherbeei_contig1550.3.1 ID=mRNA_P-wetherbeei_contig1550.3.1|Name=mRNA_P-wetherbeei_contig1550.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=852bp|location=Sequence derived from alignment at P-wetherbeei_contig1550:4078..5504- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGTGAACGCATTCGACCGGCTAGACCCGGCTGGGTTCTATGGAAA
ATTCATATGGAATAGAATCAGACCAGACGGCCGCACCTTCCACGCCACGA
GAGCGGTCAGCGTGGACCTCGGCGTCCTCTCGCCACGGCACGCTGCCGCC
TCTGCCTTGGCCCGCGTCGGTGGCACAAAGGTGATAGCCGGGATCACGCT
GCTGGTGGGGCAGCCGCCAGATTACGCGCCGTCTGCTGGCGAGATCGACG
TCCAGGTGCACTTGACTCCTTTGAGTTCCAACAAGTTTGCGTCGGGAAAG
TCCGAGCAGGCTGCTGCCATTGACGTATTGGTCAAGGACATCATTGTAGG
GTCCCGCGCGGTCCGGCTGGCGGACCTATGCATCGAGTCCGGGCGGTCAG
CCTGGAAGGTGTGCATAGACCTCGTCTGCGTGGCGCACGAGGGCAACGTG
GCGGACACGGCAGCGCTGGCAGCCGTCGCCGCCCTTGGGGCGCTGCGGCT
GCCCGACACGATGCTTGGGGACGACGGCGCCGTCATGATCAAGGAAGGCG
AGCGATGGTTCGAGTGGCATTGCACGCCGCTGTGGTTACGGCACATCCCA
ATCCCCCTCACCGTCTGCGTCTTCGGCGCCGCCGTCATCGCCGACCCGAC
CGCCGCGGAGGAGGAACTGGTGGACGCGGTGCTCACCGTCGCCACCATGG
CGCCTTCTGGGGAAGTTCCTGGCACGATCTGTGGGCTCTGGAAACCAGGC
GGCGCCGTCGTTTCGGCGGCGCAGCTGCAGGAGTGCTTGGCACTTGCGGC
GGCACACGCGGTGCGGGTGTCAGCGATGCCGGCGTTTGCGGCGGCAGCAG
CC
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