mRNA_P-wetherbeei_contig15487.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig15487.1.1 vs. uniprot
Match: A0A835ZBY1_9STRA (60S ribosomal protein L10A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY1_9STRA) HSP 1 Score: 202 bits (514), Expect = 3.020e-62 Identity = 99/117 (84.62%), Postives = 111/117 (94.87%), Query Frame = 1
Query: 1 MQVCVLGNAVHCEAAEAIGIDKMSVEDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPALVAGNDDLQEKIDTVRATIKFQMKKVMCLSVAVANVNQSQEEV 351
+++C+LGNAVHCE AEA+G+DKMSVEDLKKFNKNKK+IKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFP LVA DD+QEK DTVRATIKFQMKKVMCLSVAVANV Q+++E+
Sbjct: 74 LKICMLGNAVHCEKAEALGMDKMSVEDLKKFNKNKKIIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPTLVAATDDIQEKADTVRATIKFQMKKVMCLSVAVANVEQTKDEI 190
BLAST of mRNA_P-wetherbeei_contig15487.1.1 vs. uniprot
Match: A0A6V1MVV2_HETAK (Ribosomal protein n=3 Tax=Sar TaxID=2698737 RepID=A0A6V1MVV2_HETAK) HSP 1 Score: 192 bits (487), Expect = 3.680e-58 Identity = 98/118 (83.05%), Postives = 104/118 (88.14%), Query Frame = 1
Query: 1 MQVCVLGNAVHCEAAEAIGIDKMSVEDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPALVAGNDDLQEKIDTVRATIKFQMKKVMCLSVAVANVNQSQEEVS 354
M VCVLGNAVHCE A IGID MSVEDLKK NKNKK+IKK AKKY AFLASDTLIKQIPRLLGPGL KAGKFP LVA +DLQEK+DTVRATIKFQMKKVMC+SVAV N NQ+QEE+S
Sbjct: 74 MTVCVLGNAVHCEQAAQIGIDAMSVEDLKKLNKNKKLIKKLAKKYMAFLASDTLIKQIPRLLGPGLNKAGKFPTLVASGEDLQEKVDTVRATIKFQMKKVMCMSVAVGNCNQAQEEIS 191
BLAST of mRNA_P-wetherbeei_contig15487.1.1 vs. uniprot
Match: D8LNU8_ECTSI (60S ribosomal protein L10A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNU8_ECTSI) HSP 1 Score: 191 bits (485), Expect = 7.620e-58 Identity = 95/117 (81.20%), Postives = 106/117 (90.60%), Query Frame = 1
Query: 1 MQVCVLGNAVHCEAAEAIGIDKMSVEDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPALVAGNDDLQEKIDTVRATIKFQMKKVMCLSVAVANVNQSQEEV 351
M++C+LGNAVHCE AE IG+D+MSVEDLKKFNKNK +IKKFAKKYDAFLASD+LIKQIPRLLGPGLTKAGKFP LV D+LQ K+DTVRATIKFQMKKVMCLSVAVANV Q + E+
Sbjct: 75 MKLCMLGNAVHCEQAEQIGLDRMSVEDLKKFNKNKNLIKKFAKKYDAFLASDSLIKQIPRLLGPGLTKAGKFPTLVNAGDNLQSKVDTVRATIKFQMKKVMCLSVAVANVEQPKNEI 191
BLAST of mRNA_P-wetherbeei_contig15487.1.1 vs. uniprot
Match: A0A7S4E450_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E450_9STRA) HSP 1 Score: 186 bits (471), Expect = 9.670e-56 Identity = 91/117 (77.78%), Postives = 104/117 (88.89%), Query Frame = 1
Query: 1 MQVCVLGNAVHCEAAEAIGIDKMSVEDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPALVAGNDDLQEKIDTVRATIKFQMKKVMCLSVAVANVNQSQEEV 351
++ C++GNAVHCE AE IG+DKMSV+DLKKFNKNKKVIKKFAKK+DAFLASDTLIKQIPRLLGPGLTKAGKFP L+ G DL EKID VRATIKFQMKKVMCL+VAV NV+ + ++
Sbjct: 74 LKCCIIGNAVHCEEAERIGVDKMSVDDLKKFNKNKKVIKKFAKKFDAFLASDTLIKQIPRLLGPGLTKAGKFPTLIEGGADLTEKIDGVRATIKFQMKKVMCLNVAVGNVSMEKAQI 190
BLAST of mRNA_P-wetherbeei_contig15487.1.1 vs. uniprot
Match: A0A7S2SBK4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBK4_9STRA) HSP 1 Score: 185 bits (470), Expect = 2.220e-55 Identity = 91/117 (77.78%), Postives = 105/117 (89.74%), Query Frame = 1
Query: 1 MQVCVLGNAVHCEAAEAIGIDKMSVEDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPALVAGNDDLQEKIDTVRATIKFQMKKVMCLSVAVANVNQSQEEV 351
M+VCVLGNAVHCE AE IG++ SVEDLKKFNKNKK+IKKFAKKYDAF+ASDTLIKQIPRLLGPGLTKAGKFP L+A +LQE IDT++ATIKFQMKKVMCL+VAV N+ Q+ +E+
Sbjct: 90 MKVCVLGNAVHCEEAERIGVEHKSVEDLKKFNKNKKIIKKFAKKYDAFVASDTLIKQIPRLLGPGLTKAGKFPTLIAPGQELQECIDTLKATIKFQMKKVMCLNVAVGNLGQTHDEI 206
BLAST of mRNA_P-wetherbeei_contig15487.1.1 vs. uniprot
Match: A0A485KRP2_9STRA (Ribosomal protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A485KRP2_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.020e-52 Identity = 86/117 (73.50%), Postives = 104/117 (88.89%), Query Frame = 1
Query: 1 MQVCVLGNAVHCEAAEAIGIDKMSVEDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPALVAGNDDLQEKIDTVRATIKFQMKKVMCLSVAVANVNQSQEEV 351
+++CV+GNAVHCE AE G + +V+DLKKFNKNKKVIKK+AKKYDAFLASDTLIKQIPRLLGP L KAGKFP L++GN+D+ EK +TVRATIKFQMKKVMCL++AVA+V Q +EE+
Sbjct: 74 LKICVIGNAVHCELAEKNGFEFSTVDDLKKFNKNKKVIKKYAKKYDAFLASDTLIKQIPRLLGPALNKAGKFPTLISGNEDINEKANTVRATIKFQMKKVMCLNLAVAHVGQPKEEI 190
BLAST of mRNA_P-wetherbeei_contig15487.1.1 vs. uniprot
Match: H3GAM0_PHYRM (Ribosomal protein n=4 Tax=Phytophthora TaxID=4783 RepID=H3GAM0_PHYRM) HSP 1 Score: 177 bits (449), Expect = 1.650e-52 Identity = 87/117 (74.36%), Postives = 100/117 (85.47%), Query Frame = 1
Query: 1 MQVCVLGNAVHCEAAEAIGIDKMSVEDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPALVAGNDDLQEKIDTVRATIKFQMKKVMCLSVAVANVNQSQEEV 351
M++CVLGNA+HCE AE G + M+V+DLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGL KAGKFP LV ND L EK D VRATIKFQMKKVMCL+VA+ +V ++++
Sbjct: 67 MKICVLGNAIHCEMAEKEGFEYMTVDDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLNKAGKFPTLVTANDSLTEKADQVRATIKFQMKKVMCLNVAIGHVGLDKQQI 183
BLAST of mRNA_P-wetherbeei_contig15487.1.1 vs. uniprot
Match: A0A0P5JKX7_9CRUS (Ribosomal protein (Fragment) n=9 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5JKX7_9CRUS) HSP 1 Score: 177 bits (449), Expect = 1.920e-52 Identity = 88/117 (75.21%), Postives = 101/117 (86.32%), Query Frame = 1
Query: 1 MQVCVLGNAVHCEAAEAIGIDKMSVEDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPALVAGNDDLQEKIDTVRATIKFQMKKVMCLSVAVANVNQSQEEV 351
M++CVLGNAVHCE AE G + M+V+DLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGL KAGKFP LV+ N+ L EK D VRATIKFQMKKVMCL+VA+ +V ++E+
Sbjct: 72 MKICVLGNAVHCELAEKEGFEFMTVDDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLNKAGKFPTLVSSNEGLTEKADAVRATIKFQMKKVMCLNVAIGHVGLDKQEI 188
BLAST of mRNA_P-wetherbeei_contig15487.1.1 vs. uniprot
Match: K3WQN7_GLOUD (Ribosomal protein n=4 Tax=Pythiaceae TaxID=4782 RepID=K3WQN7_GLOUD) HSP 1 Score: 177 bits (448), Expect = 2.880e-52 Identity = 89/117 (76.07%), Postives = 99/117 (84.62%), Query Frame = 1
Query: 1 MQVCVLGNAVHCEAAEAIGIDKMSVEDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPALVAGNDDLQEKIDTVRATIKFQMKKVMCLSVAVANVNQSQEEV 351
M++CVLGNAVHCE AE G + M+V+DLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGL KAGKFP LV N+ L EK D VRATIKFQMKKVMCL+VA+ +V EE+
Sbjct: 74 MKICVLGNAVHCEMAEKAGYEFMTVDDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLNKAGKFPTLVGSNEGLGEKADQVRATIKFQMKKVMCLNVAIGHVGLKPEEI 190
BLAST of mRNA_P-wetherbeei_contig15487.1.1 vs. uniprot
Match: A0A7S4I0A1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I0A1_9STRA) HSP 1 Score: 175 bits (443), Expect = 3.030e-52 Identity = 83/117 (70.94%), Postives = 103/117 (88.03%), Query Frame = 1
Query: 1 MQVCVLGNAVHCEAAEAIGIDKMSVEDLKKFNKNKKVIKKFAKKYDAFLASDTLIKQIPRLLGPGLTKAGKFPALVAGNDDLQEKIDTVRATIKFQMKKVMCLSVAVANVNQSQEEV 351
++ C+LGNA HCE A+ IG+D MSVEDLKK NKNKK++KK AK+YD FLASD +IKQIPRLLGPGLTKAGKFP L++ +DD+QEKID V++TIKFQMKKVMCL+VAVANV+ +++V
Sbjct: 19 LKCCMLGNAAHCEQADRIGVDHMSVEDLKKLNKNKKLVKKLAKRYDFFLASDNMIKQIPRLLGPGLTKAGKFPTLLSSSDDMQEKIDEVKSTIKFQMKKVMCLNVAVANVDMDKQQV 135 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15487.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig15487.1.1 >prot_P-wetherbeei_contig15487.1.1 ID=prot_P-wetherbeei_contig15487.1.1|Name=mRNA_P-wetherbeei_contig15487.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp MQVCVLGNAVHCEAAEAIGIDKMSVEDLKKFNKNKKVIKKFAKKYDAFLAback to top mRNA from alignment at P-wetherbeei_contig15487:213..1481+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig15487.1.1 ID=mRNA_P-wetherbeei_contig15487.1.1|Name=mRNA_P-wetherbeei_contig15487.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1269bp|location=Sequence derived from alignment at P-wetherbeei_contig15487:213..1481+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig15487:213..1481+ >mRNA_P-wetherbeei_contig15487.1.1 ID=mRNA_P-wetherbeei_contig15487.1.1|Name=mRNA_P-wetherbeei_contig15487.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig15487:213..1481+ (Phaeothamnion wetherbeei SAG_119_79)back to top |