mRNA_P-wetherbeei_contig15479.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15479.1.1
Unique NamemRNA_P-wetherbeei_contig15479.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15479.1.1 vs. uniprot
Match: A0A7C4NCK0_9CHLR (MFS transporter (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C4NCK0_9CHLR)

HSP 1 Score: 228 bits (581), Expect = 2.140e-72
Identity = 109/156 (69.87%), Postives = 128/156 (82.05%), Query Frame = 1 
Query:    1 ILVAVGCCIALLSFGPRSALGQFLTPLSFERGWGRDVFSFALAIQNLLWGLGQPLAGGIADRFGPVRVLSAGALLYAAGLVCMVYSTTPLTLDITAGVLIGFGLSGCSFPMVVGALGKLVPESWRTFAFGAGTAAGSFGQFLFSPVARALIDTYDW 468
            +L+A GC IA+LSFGPRS+LG FLTP++   GWGRDVF  ALAIQNLLWG GQP AG IAD++G  RVLSAGA+LYAAG+  M  STTP  L I+AGVLIGFGLSGC+ P ++GALGKLVPE+WR  AFGA TAAGSFGQFL+SP+A  L+D+Y W
Sbjct:   18 VLIAFGCIIAVLSFGPRSSLGFFLTPVTGANGWGRDVFGLALAIQNLLWGAGQPFAGAIADKYGAPRVLSAGAILYAAGIYLMAQSTTPAMLHISAGVLIGFGLSGCAMPAIIGALGKLVPENWRLIAFGAATAAGSFGQFLYSPLAVVLMDSYGW 173
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BLAST of mRNA_P-wetherbeei_contig15479.1.1 vs. uniprot
Match: A0A447D1A5_9HYPH (Hexuronate transporter n=2 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A447D1A5_9HYPH)

HSP 1 Score: 232 bits (591), Expect = 2.140e-72
Identity = 109/156 (69.87%), Postives = 130/156 (83.33%), Query Frame = 1 
Query:    1 ILVAVGCCIALLSFGPRSALGQFLTPLSFERGWGRDVFSFALAIQNLLWGLGQPLAGGIADRFGPVRVLSAGALLYAAGLVCMVYSTTPLTLDITAGVLIGFGLSGCSFPMVVGALGKLVPESWRTFAFGAGTAAGSFGQFLFSPVARALIDTYDW 468
            +++  GC +A+L+FGPRS+LG FLTP+S   GWGRDVF FALAIQNLLWG+GQP AG +ADRFG VRV+S GA+LYAAGL  M YSTTP  LDITAGV+IGFGLSGCSF +V+ A GKL+P  WR+F+FGAGTAAGSFGQFLFSP+A AL  ++ W
Sbjct:   19 VIILCGCGVAVLAFGPRSSLGFFLTPMSQANGWGRDVFGFALAIQNLLWGIGQPFAGAVADRFGIVRVMSLGAILYAAGLALMAYSTTPAALDITAGVMIGFGLSGCSFNIVISAFGKLLPPEWRSFSFGAGTAAGSFGQFLFSPLAVALNQSFGW 174
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BLAST of mRNA_P-wetherbeei_contig15479.1.1 vs. uniprot
Match: A0A127ERS2_9HYPH (Arabinose efflux permease family protein n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127ERS2_9HYPH)

HSP 1 Score: 231 bits (589), Expect = 3.540e-72
Identity = 109/156 (69.87%), Postives = 130/156 (83.33%), Query Frame = 1 
Query:    1 ILVAVGCCIALLSFGPRSALGQFLTPLSFERGWGRDVFSFALAIQNLLWGLGQPLAGGIADRFGPVRVLSAGALLYAAGLVCMVYSTTPLTLDITAGVLIGFGLSGCSFPMVVGALGKLVPESWRTFAFGAGTAAGSFGQFLFSPVARALIDTYDW 468
            +L+A+GC IAL++FGPRSA+GQFL PLS +RGWGR+ FS A+AIQNLLWG  QP AG  ADRFGPVRVLS GALLYAAGL  M  +T+   L+++AGVLIGFGL+GCSFPMV+GALGKLVP++WR  AFGAGTAAGSFGQFL+SP+A   I  + W
Sbjct:   20 VLIAIGCVIALIAFGPRSAVGQFLAPLSLDRGWGREAFSVAIAIQNLLWGAAQPFAGAFADRFGPVRVLSLGALLYAAGLAWMSQATSLTGLNMSAGVLIGFGLAGCSFPMVIGALGKLVPDNWRPLAFGAGTAAGSFGQFLYSPMAHLFIGLFSW 175
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BLAST of mRNA_P-wetherbeei_contig15479.1.1 vs. uniprot
Match: A0A537SCQ0_9PROT (MFS transporter (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SCQ0_9PROT)

HSP 1 Score: 223 bits (568), Expect = 3.950e-72
Identity = 109/156 (69.87%), Postives = 125/156 (80.13%), Query Frame = 1 
Query:    1 ILVAVGCCIALLSFGPRSALGQFLTPLSFERGWGRDVFSFALAIQNLLWGLGQPLAGGIADRFGPVRVLSAGALLYAAGLVCMVYSTTPLTLDITAGVLIGFGLSGCSFPMVVGALGKLVPESWRTFAFGAGTAAGSFGQFLFSPVARALIDTYDW 468
            ++V  GC IA+L+FGPRS LG FL P S   GWGRDVF+FALAIQNLLWG+GQP AG IADRFG VRV+SAGA+LYA GLV M  + TP  LD++AGVLIGFGLSGCSF +V+ A GKLVPESWR+ + GAGTAAGSFGQFLFSP+    ID Y W
Sbjct:   19 VIVICGCLIAILTFGPRSTLGFFLKPWSEANGWGRDVFAFALAIQNLLWGIGQPFAGAIADRFGTVRVISAGAILYALGLVLMANARTPGLLDLSAGVLIGFGLSGCSFNIVLAAFGKLVPESWRSLSLGAGTAAGSFGQFLFSPLGVLFIDLYGW 174
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BLAST of mRNA_P-wetherbeei_contig15479.1.1 vs. uniprot
Match: A0A833GAT4_9HYPH (MFS transporter n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GAT4_9HYPH)

HSP 1 Score: 231 bits (588), Expect = 4.870e-72
Identity = 112/156 (71.79%), Postives = 129/156 (82.69%), Query Frame = 1 
Query:    1 ILVAVGCCIALLSFGPRSALGQFLTPLSFERGWGRDVFSFALAIQNLLWGLGQPLAGGIADRFGPVRVLSAGALLYAAGLVCMVYSTTPLTLDITAGVLIGFGLSGCSFPMVVGALGKLVPESWRTFAFGAGTAAGSFGQFLFSPVARALIDTYDW 468
            +++  GC IA+L+FGPRSALGQFL+P+S   GWGR+VFS ALAIQNLLWGLGQP AG IADR+G +RVL  GALLYAAGL  M YS TP  L ++AGV+IGFGLSGCSF +V+GA GKLVP+  R  AFGAGTAAGSFGQFLFSP+ARALID  DW
Sbjct:   17 VIILCGCLIAMLAFGPRSALGQFLSPMSLAFGWGREVFSLALAIQNLLWGLGQPFAGAIADRYGTIRVLCGGALLYAAGLALMAYSDTPGALHLSAGVMIGFGLSGCSFNLVIGAFGKLVPDHMRGVAFGAGTAAGSFGQFLFSPLARALIDFSDW 172
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BLAST of mRNA_P-wetherbeei_contig15479.1.1 vs. uniprot
Match: A0A363TGK3_9BRAD (MFS transporter n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TGK3_9BRAD)

HSP 1 Score: 228 bits (580), Expect = 8.430e-71
Identity = 112/156 (71.79%), Postives = 127/156 (81.41%), Query Frame = 1 
Query:    1 ILVAVGCCIALLSFGPRSALGQFLTPLSFERGWGRDVFSFALAIQNLLWGLGQPLAGGIADRFGPVRVLSAGALLYAAGLVCMVYSTTPLTLDITAGVLIGFGLSGCSFPMVVGALGKLVPESWRTFAFGAGTAAGSFGQFLFSPVARALIDTYDW 468
            I+V  G  IALL+FGPRS+ G FLTP+S   GWGRDVF+ A AIQNLLWGLGQP+AG IADRFG +RV++ GALLYAAGLV M  STTP +L +TAGVLIGFGLSGCSF +V+ A GKLVPESWR+ A GAGTAAGSFGQFLF+P   ALID Y W
Sbjct:   18 IIVLCGSLIALLTFGPRSSFGFFLTPMSSAHGWGRDVFALAFAIQNLLWGLGQPVAGAIADRFGTLRVIAGGALLYAAGLVLMTVSTTPASLHLTAGVLIGFGLSGCSFNLVLAAFGKLVPESWRSLALGAGTAAGSFGQFLFAPFGVALIDAYGW 173
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BLAST of mRNA_P-wetherbeei_contig15479.1.1 vs. uniprot
Match: A0A0Q7TYR1_9HYPH (MFS transporter n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TYR1_9HYPH)

HSP 1 Score: 227 bits (578), Expect = 1.680e-70
Identity = 108/156 (69.23%), Postives = 128/156 (82.05%), Query Frame = 1 
Query:    1 ILVAVGCCIALLSFGPRSALGQFLTPLSFERGWGRDVFSFALAIQNLLWGLGQPLAGGIADRFGPVRVLSAGALLYAAGLVCMVYSTTPLTLDITAGVLIGFGLSGCSFPMVVGALGKLVPESWRTFAFGAGTAAGSFGQFLFSPVARALIDTYDW 468
            +++  GC IA+L FGPRS+LG FLTP+S    WGRDVF+ ALA+QNLLWG+GQP AG +ADR+GP RVL+ GALLYAAGL  M YSTTP TL ++AGVLIGFGLSGCSF +VVGA GKL+P+ WR+ AFG GTAAGSFGQFLFSP+A ALI +  W
Sbjct:   19 LIIICGCVIAMLGFGPRSSLGFFLTPMSQLHNWGRDVFALALAVQNLLWGVGQPFAGAVADRYGPTRVLAGGALLYAAGLFLMAYSTTPSTLTLSAGVLIGFGLSGCSFTIVVGAFGKLLPDEWRSTAFGLGTAAGSFGQFLFSPLAVALIGSVGW 174
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BLAST of mRNA_P-wetherbeei_contig15479.1.1 vs. uniprot
Match: A0A346A2L4_9HYPH (MFS transporter n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A2L4_9HYPH)

HSP 1 Score: 226 bits (576), Expect = 3.460e-70
Identity = 106/156 (67.95%), Postives = 127/156 (81.41%), Query Frame = 1 
Query:    1 ILVAVGCCIALLSFGPRSALGQFLTPLSFERGWGRDVFSFALAIQNLLWGLGQPLAGGIADRFGPVRVLSAGALLYAAGLVCMVYSTTPLTLDITAGVLIGFGLSGCSFPMVVGALGKLVPESWRTFAFGAGTAAGSFGQFLFSPVARALIDTYDW 468
            +++  GC I+LL+FGPRSALG FLTP+S   GWGRDVF+ ALAIQNLLWG+GQP AGGIADR+G VRVL+ GA+ YA GL  M  STTP  LD+TAGVLIGFGLSGCSF +V+GA GKL+P+ WR+  FG GTAAGSFGQFL+SP+  AL+D + W
Sbjct:   21 VIIVCGCIISLLAFGPRSALGFFLTPMSQANGWGRDVFALALAIQNLLWGVGQPFAGGIADRYGTVRVLAGGAIAYALGLALMAQSTTPGMLDLTAGVLIGFGLSGCSFTIVIGAFGKLLPDEWRSLGFGCGTAAGSFGQFLYSPLGVALMDKFGW 176
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BLAST of mRNA_P-wetherbeei_contig15479.1.1 vs. uniprot
Match: UPI0017D2FAB7 (MFS transporter n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI0017D2FAB7)

HSP 1 Score: 226 bits (576), Expect = 4.270e-70
Identity = 109/156 (69.87%), Postives = 126/156 (80.77%), Query Frame = 1 
Query:    1 ILVAVGCCIALLSFGPRSALGQFLTPLSFERGWGRDVFSFALAIQNLLWGLGQPLAGGIADRFGPVRVLSAGALLYAAGLVCMVYSTTPLTLDITAGVLIGFGLSGCSFPMVVGALGKLVPESWRTFAFGAGTAAGSFGQFLFSPVARALIDTYDW 468
            +++  GC +ALL+FGPRSALG FLTP+S + GWGRDVF  ALAIQNLLWGLGQP AG +ADRFG VRV+S GALLYAAGL  M  +TTP  LD+TAGV+IGFGLSGCSF +V+ A GKL+P  WR  +FGAGTAAGSFGQFLFSP+A AL  T  W
Sbjct:   22 VVIVCGCTVALLAFGPRSALGFFLTPMSQQNGWGRDVFGLALAIQNLLWGLGQPFAGAVADRFGTVRVMSLGALLYAAGLALMSQATTPGALDLTAGVVIGFGLSGCSFNIVISAFGKLLPPEWRALSFGAGTAAGSFGQFLFSPLAVALNQTIGW 177
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BLAST of mRNA_P-wetherbeei_contig15479.1.1 vs. uniprot
Match: A0A371B3Y0_9HYPH (MFS transporter n=2 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371B3Y0_9HYPH)

HSP 1 Score: 225 bits (573), Expect = 9.250e-70
Identity = 109/156 (69.87%), Postives = 126/156 (80.77%), Query Frame = 1 
Query:    1 ILVAVGCCIALLSFGPRSALGQFLTPLSFERGWGRDVFSFALAIQNLLWGLGQPLAGGIADRFGPVRVLSAGALLYAAGLVCMVYSTTPLTLDITAGVLIGFGLSGCSFPMVVGALGKLVPESWRTFAFGAGTAAGSFGQFLFSPVARALIDTYDW 468
            +++  GC IALL FGPRSALG FLTP+S    WGRDVF+FALA+QNLLWG+GQP AG IADR+G  RVL AG +LYAAGL  M YSTTP TL ++AGVLIGFGLSGCSF +VVGA GKL+P+ WR+ AFG GTAAGSFGQFLFSP+A  LI +  W
Sbjct:   19 VIIVCGCIIALLGFGPRSALGFFLTPMSQLHNWGRDVFAFALAVQNLLWGIGQPFAGAIADRYGAPRVLMAGTVLYAAGLFLMAYSTTPATLTLSAGVLIGFGLSGCSFTIVVGAFGKLLPDEWRSTAFGFGTAAGSFGQFLFSPLAVGLIGSAGW 174
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15479.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4NCK0_9CHLR2.140e-7269.87MFS transporter (Fragment) n=1 Tax=Chloroflexi bac... [more]
A0A447D1A5_9HYPH2.140e-7269.87Hexuronate transporter n=2 Tax=Rhodoplanes piscina... [more]
A0A127ERS2_9HYPH3.540e-7269.87Arabinose efflux permease family protein n=1 Tax=R... [more]
A0A537SCQ0_9PROT3.950e-7269.87MFS transporter (Fragment) n=1 Tax=Alphaproteobact... [more]
A0A833GAT4_9HYPH4.870e-7271.79MFS transporter n=1 Tax=Pseudorhodoplanes sp. TaxI... [more]
A0A363TGK3_9BRAD8.430e-7171.79MFS transporter n=1 Tax=Bradyrhizobiaceae bacteriu... [more]
A0A0Q7TYR1_9HYPH1.680e-7069.23MFS transporter n=1 Tax=Pseudolabrys sp. Root1462 ... [more]
A0A346A2L4_9HYPH3.460e-7067.95MFS transporter n=1 Tax=Pseudolabrys taiwanensis T... [more]
UPI0017D2FAB74.270e-7069.87MFS transporter n=1 Tax=Rhodoplanes sp. TaxID=1968... [more]
A0A371B3Y0_9HYPH9.250e-7069.87MFS transporter n=2 Tax=unclassified Pseudolabrys ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15479contigP-wetherbeei_contig15479:1137..1604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1187851.A33M_3760
Preferred nameMA20_42180
PFAMsMFS_1
Model size468
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.97e-69
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1MVHG@1224|Proteobacteria,2TRA4@28211|Alphaproteobacteria,3FCQG@34008|Rhodovulum
DescriptionMajor Facilitator Superfamily
Cds size468
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186057.4907587-CDS-P-wetherbeei_contig15479:1136..16041683186057.4907587-CDS-P-wetherbeei_contig15479:1136..1604Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15479 1137..1604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15479.1.1prot_P-wetherbeei_contig15479.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15479 1137..1604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15479.1.1

>prot_P-wetherbeei_contig15479.1.1 ID=prot_P-wetherbeei_contig15479.1.1|Name=mRNA_P-wetherbeei_contig15479.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
ILVAVGCCIALLSFGPRSALGQFLTPLSFERGWGRDVFSFALAIQNLLWG
LGQPLAGGIADRFGPVRVLSAGALLYAAGLVCMVYSTTPLTLDITAGVLI
GFGLSGCSFPMVVGALGKLVPESWRTFAFGAGTAAGSFGQFLFSPVARAL
IDTYDW
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mRNA from alignment at P-wetherbeei_contig15479:1137..1604+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15479.1.1 ID=mRNA_P-wetherbeei_contig15479.1.1|Name=mRNA_P-wetherbeei_contig15479.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig15479:1137..1604+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCTTGTCGCCGTAGGATGTTGTATCGCTCTGCTCAGCTTCGGGCCGCG
GTCGGCGCTTGGCCAGTTCCTGACTCCGCTGTCGTTCGAGCGCGGTTGGG
GACGAGACGTCTTCTCCTTCGCGCTGGCGATCCAGAACCTGCTGTGGGGT
TTGGGCCAGCCGCTTGCGGGCGGCATCGCCGATCGCTTCGGTCCGGTCCG
CGTGCTCAGCGCCGGCGCGCTCCTTTACGCGGCCGGTCTCGTTTGCATGG
TCTATTCGACCACGCCGCTGACGCTGGACATCACCGCTGGCGTGCTGATC
GGCTTCGGCCTGTCGGGCTGCTCGTTTCCGATGGTGGTCGGCGCACTCGG
CAAGCTGGTGCCGGAAAGCTGGCGCACTTTCGCGTTCGGAGCCGGCACCG
CCGCGGGATCGTTCGGCCAGTTCCTGTTCTCGCCGGTGGCGCGCGCGCTG
ATCGATACCTACGACTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15479:1137..1604+

>mRNA_P-wetherbeei_contig15479.1.1 ID=mRNA_P-wetherbeei_contig15479.1.1|Name=mRNA_P-wetherbeei_contig15479.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig15479:1137..1604+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCTTGTCGCCGTAGGATGTTGTATCGCTCTGCTCAGCTTCGGGCCGCG
GTCGGCGCTTGGCCAGTTCCTGACTCCGCTGTCGTTCGAGCGCGGTTGGG
GACGAGACGTCTTCTCCTTCGCGCTGGCGATCCAGAACCTGCTGTGGGGT
TTGGGCCAGCCGCTTGCGGGCGGCATCGCCGATCGCTTCGGTCCGGTCCG
CGTGCTCAGCGCCGGCGCGCTCCTTTACGCGGCCGGTCTCGTTTGCATGG
TCTATTCGACCACGCCGCTGACGCTGGACATCACCGCTGGCGTGCTGATC
GGCTTCGGCCTGTCGGGCTGCTCGTTTCCGATGGTGGTCGGCGCACTCGG
CAAGCTGGTGCCGGAAAGCTGGCGCACTTTCGCGTTCGGAGCCGGCACCG
CCGCGGGATCGTTCGGCCAGTTCCTGTTCTCGCCGGTGGCGCGCGCGCTG
ATCGATACCTACGACTGG
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