mRNA_P-wetherbeei_contig15468.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A537FSC9_9PROT (LPS-assembly protein LptD n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537FSC9_9PROT) HSP 1 Score: 314 bits (805), Expect = 8.590e-104 Identity = 154/270 (57.04%), Postives = 196/270 (72.59%), Query Frame = 1
Query: 1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPTTGR-SDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDS---INQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGS-DPFDMLKRTISGYTPTNTRTDQAFPTSLQR-KLPFEQVY 792
+Y+R + NQD +P+FDT LADFN++Q+F+ENRFAGGDRFGDANQ TLA+T+R L GQE R T+GQRY F ++RVG++PT+ SD+LASVG RL +YW DA TQYN + RS R ++ RYAPE AK +N+ YR+ RD + QVD+SGQWPV GW+A+GRYNYS LD RLLEG+AG EYN GCWV R V QR+Q A Q++ST F+ QLE N + QIG+ D +L+R++ GY+ TN R DQA R +LPFEQVY
Sbjct: 83 FYVRVPFRNQDQMPLFDTALADFNYAQLFSENRFAGGDRFGDANQATLALTTRFLQSGGQEAFRATVGQRYYFEDERVGLSPTSELRNYHTSDVLASVGGRLFRYWTFDATTQYNPRDQRSQRYTVATRYAPELAKVVNLSYRFNRDPASPLKQVDVSGQWPVAAGWYAVGRYNYSILDQRLLEGLAGFEYNAGCWVFRAVVQRIQAAAQVSSTGFYFQLEFNGVGQIGTEDAVTLLRRSVPGYSVTNPR-DQALGLPASRPRLPFEQVY 351
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A1F4D021_9PROT (LPS-assembly protein LptD n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4D021_9PROT) HSP 1 Score: 324 bits (830), Expect = 3.370e-103 Identity = 152/266 (57.14%), Postives = 195/266 (73.31%), Query Frame = 1
Query: 1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTP-PTTGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGSDP-FDMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
YY+ Y NQD++PVFDT LADF++ Q+F ENRF+GGDRFGDANQ+TL +TSR L GQE R TIGQRY F +RVG+TP +P T+ SD+LA++G RL ++W+ DA TQYN+ Q R R ++ RY+PE AK IN YRY R++I Q+D+S QWPV GW+ +GRYNYS LDGRLLEG+AG EYN GCWV R V QR+Q ATQ+AST+ QLE N + QIG+D ++LKR + GY+ TN + P SL+ +LPFEQV+
Sbjct: 438 YYVYVPYRNQDHMPVFDTALADFSYPQLFTENRFSGGDRFGDANQVTLTLTSRFLHADGQEVFRATIGQRYYFENERVGLTPASPLRTSTESDVLAAIGGRLFRHWSFDAGTQYNRIQQRMERYTVGARYSPEIAKVINASYRYNRETIRQIDVSAQWPVAAGWYGVGRYNYSLLDGRLLEGLAGFEYNAGCWVFRTVVQRVQAATQVASTALVFQLEFNGVGQIGTDEAVELLKRNVPGYSVTNPSDARLAPPSLRPRLPFEQVF 703
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A521VL90_9PROT (LPS-assembly protein LptD n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521VL90_9PROT) HSP 1 Score: 321 bits (822), Expect = 2.780e-101 Identity = 154/266 (57.89%), Postives = 194/266 (72.93%), Query Frame = 1
Query: 1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPT-TGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGS-DPFDMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
+Y A Y QD VPVFDTGLADFN +Q+F+ENRFAGGDRFGDANQ+TLAVTSRLL +G+E LR TIGQRY F ++RVG+TP T G+SD+LA+VG R+AQ W+ D A QY+ QQSR+ R S ++RY PE AK ++ YR+ RD++ Q+D++ QWP+ PGW+A+GRYNYS L+ RLLEG+AG+EYN GCWV R V QRLQ A Q ST+ QLE N I S D + LKR + GY TN + P L+++LPFEQVY
Sbjct: 510 FYAYAPYRAQDAVPVFDTGLADFNSAQLFSENRFAGGDRFGDANQVTLAVTSRLLDANGEEHLRATIGQRYYFRDERVGLTPATSLNGRGQSDILAAVGGRVAQQWSFDGALQYDPQQSRTERYSASVRYTPEIAKMVSASYRFNRDALRQIDVAAQWPIAPGWYAVGRYNYSLLERRLLEGIAGVEYNAGCWVFRTVFQRLQAAAQTTSTALMFQLEFNGFGGIRSGDVVEFLKRQVPGYAVTNPASGDLVPPGLRQRLPFEQVY 775
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: UPI0019ADAC40 (LPS-assembly protein LptD n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI0019ADAC40) HSP 1 Score: 316 bits (810), Expect = 8.950e-100 Identity = 157/270 (58.15%), Postives = 195/270 (72.22%), Query Frame = 1
Query: 1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPTTGR--SDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSI---NQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGSDP-FDMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
+Y+ A Y QD +P+FDT LADFN++Q+F ENRFAGGDRFGDANQ+T+AVTSRL+ GQE R T+GQRY F +RVG+TPT+P GR SDLLAS+G R AQ W D QY+ Q +R R+ ++RYAPE AK I+ YRY RD + QVD+S QWPV+PGW+A+GR NYSFLD RLLEG+AGLEYN GCWV+R V QR+Q ATQ +ST + Q+E N L QIGSD D L+R I GY TN + P S++ +LPFEQV+
Sbjct: 479 FYVYAPYRAQDQIPLFDTTLADFNYAQLFTENRFAGGDRFGDANQVTVAVTSRLVGNGGQELFRATLGQRYHFKNERVGLTPTSP-LRGRHQSDLLASIGGRFAQSWTFDNTIQYDPQNARVERAGASVRYAPEIAKVISASYRYNRDPVVPVRQVDLSAQWPVQPGWYAIGRVNYSFLDKRLLEGLAGLEYNAGCWVVRGVFQRVQAATQTSSTGVYFQIEFNGLGQIGSDDTVDFLRRNIPGYARTNPIDAKLVPQSMRPRLPFEQVF 747
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A1F4ETF5_9PROT (LPS-assembly protein LptD n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4ETF5_9PROT) HSP 1 Score: 313 bits (803), Expect = 7.980e-99 Identity = 147/266 (55.26%), Postives = 194/266 (72.93%), Query Frame = 1
Query: 1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPT-TPPTTGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGS-DPFDMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
+Y+ Y NQD +P+FDTGLADFN++Q+F+ENRFAGGDRFGDANQLT A+TSRLL G E LR T+G+RY F +RVG+TPT T SDLL SVG R+ + W D TQ+N ++ R+ R ++RYAPE AK ++ YR+ R+ + Q+D+SGQWPV PGW+A+GRYNYS LD RLLEG+ G+EYN GCWV R V QR+Q ATQ++ST+F++QLEL + QIG+ D + LKR + GY+ TN R P S++ +LPF V+
Sbjct: 473 FYVYVPYRNQDQIPLFDTGLADFNYAQLFSENRFAGGDRFGDANQLTAALTSRLLGADGLEELRATLGRRYYFRSERVGLTPTSTLRGYSGSDLLGSVGGRITRSWTFDLTTQFNPREGRAERYGASVRYAPEIAKVLSASYRFNRNILRQIDVSGQWPVGPGWYAVGRYNYSVLDKRLLEGLGGIEYNAGCWVFRAVVQRIQTATQVSSTAFYLQLELTGIGQIGTGDATEFLKRNVPGYSVTNPRDRTLVPPSMRERLPFGMVF 738
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A1F4ENS7_9PROT (LPS-assembly protein LptD n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4ENS7_9PROT) HSP 1 Score: 311 bits (797), Expect = 8.480e-98 Identity = 152/266 (57.14%), Postives = 186/266 (69.92%), Query Frame = 1
Query: 1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPT-TGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGS-DPFDMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
YY+ A Y QD VP+FDTGLADFN++Q+F+ENRF GGDRFGDA+ LTLA TSRLL P G+E LR TIGQR +RVG+TP P G+SDLLASVG RLAQ W+ D A QYN Q+SR+ R S +RY PE AK ++ YR+ RD++ Q+DI+ QWP+ GW+A+GRYNYS L+ +LLEG+AG+EYN GCWV R V QRLQ A Q ST QLE N I S D D LKR + GY TN P S++ +LPFEQV+
Sbjct: 487 YYVYAPYRAQDTVPLFDTGLADFNYAQLFSENRFVGGDRFGDADHLTLAATSRLLGPGGEEVLRATIGQRLYLKSERVGLTPAAPLRGRGQSDLLASVGGRLAQGWSFDGAAQYNLQRSRTERYSAAVRYTPEIAKLVSASYRFNRDALRQIDIAAQWPLSAGWYAIGRYNYSLLERQLLEGIAGIEYNAGCWVFRTVFQRLQAAAQTTSTVLMFQLEFNGFGGIQSGDVTDFLKRHVPGYASTNPGAGDLVPPSMRPRLPFEQVF 752
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A537ED09_9PROT (LPS-assembly protein LptD n=4 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537ED09_9PROT) HSP 1 Score: 311 bits (796), Expect = 9.550e-98 Identity = 152/270 (56.30%), Postives = 196/270 (72.59%), Query Frame = 1
Query: 1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPTTGR-SDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDS---INQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGS-DPFDMLKRTISGYTPTNTRTDQAFPTSLQR-KLPFEQVY 792
+Y+R + +QD +P+FDT LADFN++Q+F+ENRFAGGDRFGDANQ TLA+T+R L GQE R T+GQRY F ++RVG+TP + SD+LASVG RL +YW DA TQYN + RS R ++ RYAPE AK +N+ YR+ RD + QVD+SGQWPV GW+A+GRYNYS LD RLLEG+AG EYN GCWV R V QR+Q A Q++ST F+ QLE N + QIG+ + +L+R++ GY+ TN R DQA + R +LPFEQVY
Sbjct: 474 FYVRVPFRSQDQMPLFDTALADFNYAQLFSENRFAGGDRFGDANQATLALTTRFLQSGGQEAFRATVGQRYYFEDERVGLTPISDLRNYHTSDVLASVGGRLFRYWTFDATTQYNPRDQRSQRYTVATRYAPELAKVVNLSYRFNRDPATPLKQVDVSGQWPVAAGWYAVGRYNYSILDQRLLEGLAGFEYNAGCWVFRAVVQRIQAAAQVSSTGFYFQLEFNGVGQIGTQEAVTLLRRSVPGYSVTNPR-DQALGSPASRPRLPFEQVY 742
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A1F4F5L4_9PROT (LPS-assembly protein LptD n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F5L4_9PROT) HSP 1 Score: 309 bits (792), Expect = 3.270e-97 Identity = 149/265 (56.23%), Postives = 189/265 (71.32%), Query Frame = 1
Query: 1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPTTGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGSDP-FDMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
+Y+ Y NQD +P+FDT LADFNF Q+F ENRF GGDRFGDANQ TLA+TSR L +GQE R TIGQRY F ++RVG+ T+ SD+L SVG RL ++W DA TQY++ Q + R + LRY PE AK +N YR++R SI Q+D+S QWP+ GW+A+GRYNYSFLD RLLEG+AG+EYN GCWV R V QR+Q ATQ++ST FF QLE N + Q+G+D +L R++ GY TN R P SL+ +LPFEQV+
Sbjct: 473 FYVYVPYRNQDQIPLFDTALADFNFPQLFTENRFGGGDRFGDANQATLALTSRFL-QAGQEAFRATIGQRYYFRDERVGLPGAPLRTSLESDVLGSVGGRLFRHWTFDATTQYSRHQQSAERYTAALRYNPEVAKVLNASYRFSRASIRQIDLSAQWPLAAGWYAVGRYNYSFLDKRLLEGLAGVEYNAGCWVFRAVVQRVQAATQVSSTGFFFQLEFNGVGQVGTDDAVALLSRSVPGYAVTNPRDPGLAPPSLRPRLPFEQVF 736
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A521YZK0_9PROT (LPS-assembly protein LptD n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YZK0_9PROT) HSP 1 Score: 307 bits (787), Expect = 1.760e-96 Identity = 146/265 (55.09%), Postives = 189/265 (71.32%), Query Frame = 1
Query: 1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTPPTTGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDSINQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGSDPF-DMLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
+Y+ Y NQD +P+FDT LADFNF Q+F ENRF GGDRFGDA+Q+TLA+TSR L +GQE R T+GQRY F ++RVG+ T+ SD+L SVG RL ++W DA TQYN+ + R+ R + LRY PE AK +N YR++R +I Q+D+S QWPV GW+A+GRYNYSFLD RLLEG+AG EYN GCW R V QR+Q ATQ++ST FF QLE N + Q+G+D +L R++ GY+ +N R P S + KLPFEQV+
Sbjct: 472 FYVYVPYRNQDQLPLFDTSLADFNFPQLFTENRFGGGDRFGDADQVTLALTSRFL-RTGQEAFRATVGQRYYFKDERVGLPGAPLRTSLESDVLGSVGGRLFRHWTFDATTQYNRHEQRAERYTTALRYNPEVAKVLNASYRFSRGTIRQIDLSAQWPVAAGWYAVGRYNYSFLDKRLLEGLAGFEYNAGCWAFRAVMQRVQAATQVSSTGFFFQLEFNGVGQVGTDDVVKLLSRSVPGYSVSNPRDPALAPPSARAKLPFEQVF 735
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Match: A0A1F3YU71_9PROT (LPS-assembly protein LptD n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YU71_9PROT) HSP 1 Score: 307 bits (786), Expect = 3.700e-96 Identity = 151/267 (56.55%), Postives = 194/267 (72.66%), Query Frame = 1
Query: 1 YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVTSRLLFPSGQEFLRGTIGQRYSFSEQRVGITPTTP-PTTGRSDLLASVGARLAQYWNLDAATQYNQQQSRSTRSSLNLRYAPEFAKFINMGYRYTRDS-INQVDISGQWPVRPGWFALGRYNYSFLDGRLLEGVAGLEYNGGCWVLRLVAQRLQVATQLASTSFFVQLELNDLAQIGSDPFD-MLKRTISGYTPTNTRTDQAFPTSLQRKLPFEQVY 792
+Y+ A + +Q +P+FDTG+ DFN++Q+F ENRFAGGDRFGDANQ+TLA +SR+L P+G+E LR T+GQRY FS++RVGITP+ T +SDLLAS+G RL + + D+A QYN Q SR+ R S++ R+APE AK ++ YR+ RD+ + Q+DI+GQWPV PGW+ALGR+NYS D RLLEG+AGLEYN GCWV R QR+Q A Q +ST F QLE N +GSD MLKR+I GY TN P SL R LPFEQV+
Sbjct: 488 FYVYAPFRDQSRIPLFDTGVTDFNYAQIFTENRFAGGDRFGDANQITLAASSRILTPAGEELLRATVGQRYYFSDERVGITPSAALRTRDQSDLLASLGGRLGRNLSFDSAVQYNPQLSRAERYSVSARFAPEIAKVVSASYRFNRDTRLKQIDIAGQWPVAPGWYALGRWNYSVSDSRLLEGIAGLEYNAGCWVFRGAFQRIQAAAQTSSTGVFFQLEFNGFGGVGSDAITTMLKRSIPGYAVTNPAEGALVPPSL-RPLPFEQVF 753 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15468.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig15468.2.1 >prot_P-wetherbeei_contig15468.2.1 ID=prot_P-wetherbeei_contig15468.2.1|Name=mRNA_P-wetherbeei_contig15468.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=265bp YYLRAGYHNQDNVPVFDTGLADFNFSQMFNENRFAGGDRFGDANQLTLAVback to top mRNA from alignment at P-wetherbeei_contig15468:812..1606- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig15468.2.1 ID=mRNA_P-wetherbeei_contig15468.2.1|Name=mRNA_P-wetherbeei_contig15468.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig15468:812..1606- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig15468:812..1606- >mRNA_P-wetherbeei_contig15468.2.1 ID=mRNA_P-wetherbeei_contig15468.2.1|Name=mRNA_P-wetherbeei_contig15468.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=795bp|location=Sequence derived from alignment at P-wetherbeei_contig15468:812..1606- (Phaeothamnion wetherbeei SAG_119_79)back to top |