mRNA_P-wetherbeei_contig15467.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15467.5.1
Unique NamemRNA_P-wetherbeei_contig15467.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15467.5.1 vs. uniprot
Match: A0A2W5X0Q1_9BACT (30S ribosomal protein S3 n=1 Tax=Candidatus Eremiobacteraeota bacterium TaxID=2052317 RepID=A0A2W5X0Q1_9BACT)

HSP 1 Score: 158 bits (400), Expect = 3.880e-45
Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = 1 
Query:    1 ELDTELVAQNIAEGLEKRVAFRRAMKMAVMRSMKAGAKGVKVQISGRLGGAEIARSERTHQGKVPLHTLRADVDYALCEARTPAGRIGVKVWLYRGEILPQKAEAQ 318
            ELD  LVAQNI + LEKR+AFRRAMK A+MRSMKAGA+G+KVQ+SGRLGGAEIAR ER H GKVPLHTLRAD+DYA  EA T  GRIGVKVW+YRGE+LP +   +
Sbjct:  109 ELDARLVAQNIVDQLEKRIAFRRAMKQAIMRSMKAGARGIKVQVSGRLGGAEIARRERNHDGKVPLHTLRADIDYAHVEAFTTFGRIGVKVWIYRGEVLPDQPRTE 214
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BLAST of mRNA_P-wetherbeei_contig15467.5.1 vs. uniprot
Match: E6Q886_9ZZZZ (Ribosomal protein S3 (BS3) (Modular protein) n=3 Tax=root TaxID=1 RepID=E6Q886_9ZZZZ)

HSP 1 Score: 153 bits (386), Expect = 5.710e-44
Identity = 76/107 (71.03%), Postives = 89/107 (83.18%), Query Frame = 1 
Query:    1 ELDTELVAQNIAEGLEKRVAFRRAMKMAVMRSMKAGAKGVKVQISGRLGGAEIARSERTHQGKVPLHTLRADVDYALCEARTPAGRIGVKVWLYRGEILPQKAEAQP 321
            ELD  LV QNI + LEKR+AFRRA+K A+MR+MKAGA+GVKVQ+SGRLGGAEIAR+ER+  GKVPLHTLRAD+DYA  EA T  GRIGVKVW+YRGE+LP    + P
Sbjct:  110 ELDARLVGQNIVDQLEKRIAFRRAIKQAIMRTMKAGARGVKVQVSGRLGGAEIARTERSSDGKVPLHTLRADIDYANVEAFTTFGRIGVKVWIYRGEVLPDGTRSGP 216
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BLAST of mRNA_P-wetherbeei_contig15467.5.1 vs. uniprot
Match: A0A7X8XMQ7_9BURK (30S ribosomal protein S3 n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XMQ7_9BURK)

HSP 1 Score: 150 bits (378), Expect = 2.110e-43
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 1 
Query:    1 ELDTELVAQNIAEGLEKRVAFRRAMKMAVMRSMKAGAKGVKVQISGRLGGAEIARSERTHQGKVPLHTLRADVDYALCEARTPAGRIGVKVWLYRGEILPQK-AEAQP 321
            E +  LVA+NIAE L KRVAFRRAMK A  R MKAGAKGV++Q+SGRLGG EIARSERT QGKVPLHTLRADVDYA+  A T  G IGVKVW+YRG+ILP++ A+AQP
Sbjct:  108 EFEAGLVAENIAEALVKRVAFRRAMKQAAQRVMKAGAKGVRIQVSGRLGGHEIARSERTFQGKVPLHTLRADVDYAIRTAETTYGVIGVKVWVYRGDILPERVAQAQP 215
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BLAST of mRNA_P-wetherbeei_contig15467.5.1 vs. uniprot
Match: T0BPA8_ALIAG (30S ribosomal protein S3 n=6 Tax=Alicyclobacillus TaxID=29330 RepID=T0BPA8_ALIAG)

HSP 1 Score: 149 bits (376), Expect = 4.740e-43
Identity = 72/108 (66.67%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:    1 ELDTELVAQNIAEGLEKRVAFRRAMKMAVMRSMKAGAKGVKVQISGRLGGAEIARSERTHQGKVPLHTLRADVDYALCEARTPAGRIGVKVWLYRGEILPQKAEAQPE 324
            +L  +LV +NIA+ LE+RV+FRRA+K A+ RSM+AGAKG++VQ+SGRLGGAEIAR+E   +G VPLHTLRAD+DYAL EA T  GRIGVKVW+YRGE+LPQ+ +A  E
Sbjct:  110 DLSAKLVGENIAQQLERRVSFRRALKQAIQRSMRAGAKGIRVQVSGRLGGAEIARTEGYSEGTVPLHTLRADIDYALSEAHTTYGRIGVKVWIYRGEVLPQRTKAASE 217
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BLAST of mRNA_P-wetherbeei_contig15467.5.1 vs. uniprot
Match: A0A512CR87_9BACL (30S ribosomal protein S3 n=1 Tax=Alicyclobacillus acidoterrestris TaxID=1450 RepID=A0A512CR87_9BACL)

HSP 1 Score: 149 bits (376), Expect = 4.740e-43
Identity = 72/108 (66.67%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:    1 ELDTELVAQNIAEGLEKRVAFRRAMKMAVMRSMKAGAKGVKVQISGRLGGAEIARSERTHQGKVPLHTLRADVDYALCEARTPAGRIGVKVWLYRGEILPQKAEAQPE 324
            +L  +LV +NIA+ LE+RV+FRRA+K A+ RSM+AGAKG++VQ+SGRLGGAEIAR+E   +G VPLHTLRAD+DYAL EA T  GRIGVKVW+YRGE+LPQ+ +A  E
Sbjct:  110 DLSAKLVGENIAQQLERRVSFRRALKQAIQRSMRAGAKGIRVQVSGRLGGAEIARTEGYSEGTVPLHTLRADIDYALSEAHTTYGRIGVKVWIYRGEVLPQRTKAASE 217
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BLAST of mRNA_P-wetherbeei_contig15467.5.1 vs. uniprot
Match: A0A6N8B6Z6_9FIRM (30S ribosomal protein S3 n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A6N8B6Z6_9FIRM)

HSP 1 Score: 149 bits (375), Expect = 5.670e-43
Identity = 70/105 (66.67%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:    1 ELDTELVAQNIAEGLEKRVAFRRAMKMAVMRSMKAGAKGVKVQISGRLGGAEIARSERTHQGKVPLHTLRADVDYALCEARTPAGRIGVKVWLYRGEILPQKAEA 315
            E+D +LVA+N+A  LE+R+AFRRAMK  V R++K GAKG+KV +SGRLGGAEIAR+E T++GKVPLHTLRAD+DY   EA T  G+IGVKVW+Y+GE+LPQ+A+A
Sbjct:  110 EMDAQLVAENVASQLERRIAFRRAMKQVVGRAVKMGAKGIKVSVSGRLGGAEIARTEWTNEGKVPLHTLRADIDYGFAEANTTYGKIGVKVWIYKGEVLPQRAKA 214
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BLAST of mRNA_P-wetherbeei_contig15467.5.1 vs. uniprot
Match: UPI001A9C7731 (30S ribosomal protein S3 n=1 Tax=Desulforadius tongensis TaxID=1216062 RepID=UPI001A9C7731)

HSP 1 Score: 148 bits (374), Expect = 6.220e-43
Identity = 71/105 (67.62%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:    1 ELDTELVAQNIAEGLEKRVAFRRAMKMAVMRSMKAGAKGVKVQISGRLGGAEIARSERTHQGKVPLHTLRADVDYALCEARTPAGRIGVKVWLYRGEILPQKAEA 315
            E+D +LVA+N+A  LE+R+AFRRAMK  V R+MK GAKG+KV +SGRLGGAEIAR+E T +GKVPLHTLRAD+DY   EA T  G+IGVKVW+Y+GE+LPQ+A+A
Sbjct:  101 EIDAQLVAENVAAQLERRIAFRRAMKQVVNRAMKMGAKGIKVAVSGRLGGAEIARTEWTSEGKVPLHTLRADIDYGFAEADTTYGKIGVKVWIYKGEVLPQRAKA 205
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BLAST of mRNA_P-wetherbeei_contig15467.5.1 vs. uniprot
Match: D5WRS6_KYRT2 (30S ribosomal protein S3 n=2 Tax=Kyrpidia TaxID=1129704 RepID=D5WRS6_KYRT2)

HSP 1 Score: 149 bits (375), Expect = 6.530e-43
Identity = 74/108 (68.52%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:    1 ELDTELVAQNIAEGLEKRVAFRRAMKMAVMRSMKAGAKGVKVQISGRLGGAEIARSERTHQGKVPLHTLRADVDYALCEARTPAGRIGVKVWLYRGEILPQKAEAQPE 324
            EL  +LVA+N+A  LE+RVAFRRAMK A+ R+M+AGAKGVK+Q+SGRL GAEIAR+E   +G VPLHTLRAD+DYAL EA T  GRIGVKVW+YRGEILP K +   E
Sbjct:  110 ELSAKLVAENVASQLERRVAFRRAMKQAIQRTMRAGAKGVKIQVSGRLAGAEIARTEGYSEGTVPLHTLRADIDYALAEAHTTYGRIGVKVWIYRGEILPVKGDRNAE 217
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BLAST of mRNA_P-wetherbeei_contig15467.5.1 vs. uniprot
Match: A0A7X8WWH1_9FIRM (30S ribosomal protein S3 n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A7X8WWH1_9FIRM)

HSP 1 Score: 148 bits (373), Expect = 1.140e-42
Identity = 70/108 (64.81%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:    1 ELDTELVAQNIAEGLEKRVAFRRAMKMAVMRSMKAGAKGVKVQISGRLGGAEIARSERTHQGKVPLHTLRADVDYALCEARTPAGRIGVKVWLYRGEILPQKAEAQPE 324
            ELD +LVA+NIA  LE+R+AFRRAMK +V R+++ GA+G+KVQ+SGRLGGAEIARSE   +GKVPLHTLRAD+DY   EA T  G+IGVKVW+Y+GE+LP+  +A+P+
Sbjct:  110 ELDAQLVAENIASQLERRIAFRRAMKQSVSRTLRMGAEGIKVQVSGRLGGAEIARSEWYSEGKVPLHTLRADIDYGFAEANTTYGKIGVKVWIYKGEVLPEAKKAEPK 217
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BLAST of mRNA_P-wetherbeei_contig15467.5.1 vs. uniprot
Match: A0A7C6PJZ7_9FIRM (30S ribosomal protein S3 n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C6PJZ7_9FIRM)

HSP 1 Score: 147 bits (372), Expect = 1.610e-42
Identity = 69/105 (65.71%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    1 ELDTELVAQNIAEGLEKRVAFRRAMKMAVMRSMKAGAKGVKVQISGRLGGAEIARSERTHQGKVPLHTLRADVDYALCEARTPAGRIGVKVWLYRGEILPQKAEA 315
            +LD  LVA+N+A  LE+RV+FRRAMK A+ RSM+AGA+GVK+ ISGR+GGAEIAR+E T +GK+PLHTLRAD+DY   EA+T  GR+GVKVW+Y+GE+LP++A+A
Sbjct:  110 DLDAALVAENVAFQLERRVSFRRAMKQAIQRSMRAGAQGVKIAISGRIGGAEIARTEWTAEGKIPLHTLRADIDYGFAEAKTTYGRLGVKVWIYKGEVLPERAQA 214
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15467.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2W5X0Q1_9BACT3.880e-4573.5830S ribosomal protein S3 n=1 Tax=Candidatus Eremio... [more]
E6Q886_9ZZZZ5.710e-4471.03Ribosomal protein S3 (BS3) (Modular protein) n=3 T... [more]
A0A7X8XMQ7_9BURK2.110e-4373.1530S ribosomal protein S3 n=1 Tax=Burkholderiales b... [more]
T0BPA8_ALIAG4.740e-4366.6730S ribosomal protein S3 n=6 Tax=Alicyclobacillus ... [more]
A0A512CR87_9BACL4.740e-4366.6730S ribosomal protein S3 n=1 Tax=Alicyclobacillus ... [more]
A0A6N8B6Z6_9FIRM5.670e-4366.6730S ribosomal protein S3 n=1 Tax=Firmicutes bacter... [more]
UPI001A9C77316.220e-4367.6230S ribosomal protein S3 n=1 Tax=Desulforadius ton... [more]
D5WRS6_KYRT26.530e-4368.5230S ribosomal protein S3 n=2 Tax=Kyrpidia TaxID=11... [more]
A0A7X8WWH1_9FIRM1.140e-4264.8130S ribosomal protein S3 n=1 Tax=Clostridia bacter... [more]
A0A7C6PJZ7_9FIRM1.610e-4265.7130S ribosomal protein S3 n=1 Tax=Firmicutes bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15467contigP-wetherbeei_contig15467:1267..1602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1356854.N007_07790
Preferred namerpsC
PFAMsKH_2,Ribosomal_S3_C
Model size336
Max annot lvl91061|Bacilli
KEGG koko:K02982
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue7.77e-44
EggNOG OGsCOG0092@1|root,COG0092@2|Bacteria,1TPCP@1239|Firmicutes,4HAUR@91061|Bacilli,2788F@186823|Alicyclobacillaceae
DescriptionBinds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
Cds size336
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186057.2035866-CDS-P-wetherbeei_contig15467:1266..16021683186057.2035866-CDS-P-wetherbeei_contig15467:1266..1602Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15467 1267..1602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15467.5.1prot_P-wetherbeei_contig15467.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15467 1267..1602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15467.5.1

>prot_P-wetherbeei_contig15467.5.1 ID=prot_P-wetherbeei_contig15467.5.1|Name=mRNA_P-wetherbeei_contig15467.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
ELDTELVAQNIAEGLEKRVAFRRAMKMAVMRSMKAGAKGVKVQISGRLGG
AEIARSERTHQGKVPLHTLRADVDYALCEARTPAGRIGVKVWLYRGEILP
QKAEAQPESQH*
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mRNA from alignment at P-wetherbeei_contig15467:1267..1602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15467.5.1 ID=mRNA_P-wetherbeei_contig15467.5.1|Name=mRNA_P-wetherbeei_contig15467.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig15467:1267..1602- (Phaeothamnion wetherbeei SAG_119_79)
GAGCTCGATACCGAGCTCGTTGCCCAGAACATCGCTGAAGGCCTCGAAAA
GCGCGTGGCATTCCGCCGCGCGATGAAGATGGCTGTAATGCGTTCGATGA
AAGCTGGCGCAAAAGGCGTGAAGGTTCAGATTTCCGGCCGCCTGGGTGGT
GCCGAAATCGCTCGTTCCGAGCGCACGCATCAGGGCAAAGTGCCCCTTCA
TACGCTGCGCGCGGATGTCGACTATGCCTTGTGCGAAGCTCGCACCCCGG
CAGGTCGCATCGGCGTCAAGGTATGGCTCTATCGTGGCGAGATTCTCCCC
CAGAAGGCAGAAGCTCAGCCCGAGTCTCAGCACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15467:1267..1602-

>mRNA_P-wetherbeei_contig15467.5.1 ID=mRNA_P-wetherbeei_contig15467.5.1|Name=mRNA_P-wetherbeei_contig15467.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig15467:1267..1602- (Phaeothamnion wetherbeei SAG_119_79)
GAGCTCGATACCGAGCTCGTTGCCCAGAACATCGCTGAAGGCCTCGAAAA
GCGCGTGGCATTCCGCCGCGCGATGAAGATGGCTGTAATGCGTTCGATGA
AAGCTGGCGCAAAAGGCGTGAAGGTTCAGATTTCCGGCCGCCTGGGTGGT
GCCGAAATCGCTCGTTCCGAGCGCACGCATCAGGGCAAAGTGCCCCTTCA
TACGCTGCGCGCGGATGTCGACTATGCCTTGTGCGAAGCTCGCACCCCGG
CAGGTCGCATCGGCGTCAAGGTATGGCTCTATCGTGGCGAGATTCTCCCC
CAGAAGGCAGAAGCTCAGCCCGAGTCTCAGCACTAA
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