mRNA_P-wetherbeei_contig15455.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig15455.1.1 vs. uniprot
Match: D7FIM3_ECTSI (Reelin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIM3_ECTSI) HSP 1 Score: 360 bits (924), Expect = 4.090e-112 Identity = 188/396 (47.47%), Postives = 254/396 (64.14%), Query Frame = 1
Query: 1 QVYVYSSNRWGYDFCDGSF---EGAVRVLEDDFERWQNSSDPASNAMASGRLWSAIVNGRPGDGCGASSGAAALFFSGADHRSAETLDLDVRWGGRLEFWLRMGPAAVVMADAAATAVAADAATCRPAYGGSVHLSYSADGGGNWTELTTLQTFLYRGNDFSAVEVELPGGAATPATRFRFVQKDFRNADEYWALDDVRVVASLRPDWKANDTFVSRVATEQEIAREVACCMNSDQCDLSRARQEEIDCSSYADGYSNERAVMGAELFVILAGLVSLFRGGYRVAQMAVVSGWEAVLPERLRRRRAKLFAADEPPPGAMDGSFALRVSRRWRLGFAAAAAAPLAAAWLWCASLLRNFFLAADVPLGRGLGGPDVT---LHFRVHVSGLFLLATVLD 1170
+VYVYS +WG+DFC+ F V ED FE W ++ + +SN MAS R W + NGR D CG +GA + FSGA+ R ETLD+D+R+GG++ F ++MGP T A A C+PAYGG+V+L YS DGGG W L+ L+TF YR F+ VEV++P + RFR+ Q++F NA EYWALDDVRV++ W+ F S V E E RE+ CC+NS+QCDLS+ RQE +DC++Y NERA++GAELFV+LAGLV+L R YR + V+ GWE +P LR++RAK+F AD+P PG+M+ F L V+ RW+ F A PL WL+CA+LLRNF+L ++ L PDV+ + +VHVSGLF+LAT +D
Sbjct: 367 EVYVYSDEKWGFDFCEEEFMSGSAGAYVFEDTFEMW-DAENLSSNTMASAR-WDHVTNGRLSDVCGLGNGAGTMMFSGANFREVETLDVDMRYGGKVLFLMKMGP----------TVPDASAVLCKPAYGGNVYLYYSLDGGGVWETLSILETFAYRKEAFTEVEVDVPSTLNAASVRFRWKQENFENALEYWALDDVRVLSYFAEGWRETAAFESTVDVEHETLREIRCCLNSEQCDLSKNRQEAVDCAAYITETLNERALLGAELFVLLAGLVTLARSLYRTGEGMVLEGWEYAIPVFLRKKRAKIFMADDPVPGSMNKVFRLEVNLRWQTRFVALVGVPLGICWLYCATLLRNFYLVEELTLL-----PDVSPQSVRVKVHVSGLFILATFID 745
BLAST of mRNA_P-wetherbeei_contig15455.1.1 vs. uniprot
Match: A0A836CJ23_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ23_9STRA) HSP 1 Score: 240 bits (613), Expect = 7.620e-68 Identity = 138/341 (40.47%), Postives = 191/341 (56.01%), Query Frame = 1
Query: 190 ASSGAAALFFSGA-DH-RSAETLDLDVRWGGRLEFWLRMGPAAVVMADAAATAVAADAATCRPAYGGSVHLSYSADGGGNWTELTTLQTFLYRGNDFSAVEVELPGGAATPATRFRFVQKDFRNADEYWALDDVRVVASLRPDWKANDTFVSRVATEQEIAREVACCMNSDQCDLSRARQEEIDCSSYADGYSNERAVMGAELFVILAGLVSLFRGGYRVAQMAVVSGWEAVLPERLRRRRAKLFAADEPPPGAMDGSFALRVSRRWRLGFAAAAAAPLAAAWLWCASLLRNFFLAADVPLGRGLGGPDVTLHFRVHVSGLFLLATVLDALTAAAVGRCVV 1206
A+ A SGA DH + T +VR+ L+FW +MGP AA C+PAYGG+V++ +S +G ++F++ E+WALDDVRVV++ P W F ++ A + ++ CCMNS+QC LS+A QE +DC+ +A NERA++GAE FV++A + +L R Y AQ V+ GW +LPE+LR ++AKLF AD+PPPG MD FAL+VS+ WR+ F A APL WLWCASLLRNF+L ++ +G GL P + L FRVHVSG+FL+AT+LD L + R VV
Sbjct: 384 ATDAATNAMLSGAWDHVTNGPTTKFEVRFVPPLQFWFKMGPPTDDPL----------AAACKPAYGGNVYIYFSTEG------------------------------------------ENFQDLLEHWALDDVRVVSAFAPQWHDGAAFRAQAAGDDATLAQIKCCMNSEQCSLSKAEQEAVDCAKFASESGNERAILGAERFVLIAAVAALIRWIYATAQAVVLRGWTQLLPEKLRPKQAKLFMADDPPPGIMDSQFALQVSQVWRITFMVANGAPLVLLWLWCASLLRNFYLVEEITVGAGLPHPWL-LVFRVHVSGVFLIATLLDGLAVYTLAREVV 671
BLAST of mRNA_P-wetherbeei_contig15455.1.1 vs. uniprot
Match: A0A482SZW4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZW4_9ARCH) HSP 1 Score: 153 bits (387), Expect = 5.080e-37 Identity = 101/284 (35.56%), Postives = 145/284 (51.06%), Query Frame = 1
Query: 4 VYVYSSNRWGYDFCDGSFEGAVRVLEDDFERWQNSSDPASNAMASGRLWSAIVNGRPGDGCGASS---GAAALFFSGADHRSAETLDLDVRWGGRLEFWLRMGPAAVVMADAAATAVAADAAT--CRPAYGGSVHLSYSADGGGNWTELTTLQTFLYRGNDFSAVEVELPGGAATPATRFRFVQKDFRNADEYWALDDVRVVASLRPDWKANDTFVSRVATEQEIAREVACCMNSDQCDLSRARQEEIDCSSYADGYSNERAVMG-AELFVILAGLVSLFRGGY 837
+Y S + GYD C SF + V ED FE WQ ++P+SN M S W + N + CGA G +L F G R+AET DLDV GG+LEF L + P + DA C+ Y G+V + +S D G NW L LYR + FS ++LP A++P TRFRF Q F + WALD+VRV+ L +W+ N + V +E ++ CC ++D C+ A ++ CS +A YS R + +E+ ++LA L+ + R Y
Sbjct: 139 LYHQSGRKLGYDICKDSFNEGIYVFEDTFEHWQVLTNPSSNLMVSAH-WLNVTNAQSDSYCGAGEVFGGKKSLRFGGEFMRAAETEDLDVERGGKLEFELFLPP------------IGFDAFNPFCKTGYIGTVLVDFSVDSGQNWITLARYDPALYRRDQFSLFSLQLPPEASSPHTRFRFYQPVFEALRDNWALDNVRVLRVLPLNWQTNGGYRENVRAGREEVQKGQCCADTDWCNKRLAEDDKEGCSDFA-WYSQGRYLFRLSEVLLMLAVLIVVLRFFY 408
BLAST of mRNA_P-wetherbeei_contig15455.1.1 vs. uniprot
Match: B8LBY0_THAPS (Reelin n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBY0_THAPS) HSP 1 Score: 130 bits (327), Expect = 3.720e-29 Identity = 87/274 (31.75%), Postives = 128/274 (46.72%), Query Frame = 1
Query: 1 QVYVYSSNRWGYDFCDGSFE----------------------GAVRVLEDDFERWQNSSDPASNAMASGRLWSAIVNGRPGDGCG----------------ASSGAAALFFSGADHRSAETLDLDVRWGGRLEFWLRMGPAAVVMADAAATAVAADAATCRPAYGGSVHLSYSADGGGNWTELTTLQTFLYRGNDFSAVEVELPGGAATPATRFRFVQKDFRNADEYWALDDVRVVASLRPDWKANDTFVSRVATEQEIAREVACCMNSDQCDL 708
++YV+S++ GYD C S V V +DDFE P A A W IVNG D CG A+ AL F+G R A T+ L+V GGR+EF ++MG + D + +TC+ AYGG V L YS G W + T++ + YRG+ F + ++P GA + +T FRF Q+ F ++WA+DDVR+ A+ +P W+ + F R + E + + CC N+DQC +
Sbjct: 314 ELYVFSNHTLGYDTCISSPRDEATRTKIITAPHPLLLLSDNLAGVYVFDDDFEL------PPRLASAP---WHEIVNGHYSDACGVNLKEPPERGNHAGYKAAKNENALVFTGVYKRQAATVGLNVEHGGRVEFHIKMG---AITND--------EFSTCKTAYGGDVTLEYSVSSG-EWIVMATMEVWKYRGHIFQFISHDIPIGARSNSTSFRFRQESFNALRDHWAIDDVRIRANFKPQWQHSIDFAQRQTIQDEDVKRMQCCYNTDQCSV 566
BLAST of mRNA_P-wetherbeei_contig15455.1.1 vs. uniprot
Match: A0A7S1G2W0_9STRA (Reelin (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G2W0_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.080e-21 Identity = 83/322 (25.78%), Postives = 135/322 (41.93%), Query Frame = 1
Query: 4 VYVYSSNRWGYDFCDGSFEGAVRVLEDDFERWQNSSDPASNAMASGRLWSAIVNGRPGDGCGASSGAAALFFSGADHRSAETLDLDVRWGGRLEFWLRMGPAAVVMADAAATAVAADAATCRPAYGGSVHLSYSADGGGNWTELTTLQTFLYRGNDFSAVEVELPGGAATPATRFRFVQKDFRNADEYWALDDVRVVASLRPDWKANDTFVSRVATEQEIAREVACCMNSDQCDLSRARQEEIDCSSYADGYSN--ERAVMGAELFVILAGLVSLFRGG---YRVAQMAVVSGWEAVLPERLRRRRAKLFAADEPPPGAMDG 954
Y Y+ G D+ F A ++ + F +N+ + + W CG G A+ F G + R AET+D DVR+GG +EF L G V C G V L+YS DGG W + T YR +++ V LP A+TPATRF++ QK+F + +A+D++++ A+L W ++D F ++ A E R CC+ + C + C + G+ + M E+ + ++S + V+Q ++G L R++A + PP G
Sbjct: 217 TYDYAGGLLGVDWELDGFYPAEILMHEHF----------ANSTPNAKYWGNQSGNVMSTTCGTVRGPVAMRFRGPNPRFAETVDFDVRYGGEIEFHLAYGRGQV---------------GCASLEQGPVTLAYSTDGGEYWEDFVTYDRNTYRVENYTHVRHVLPANASTPATRFKWYQKEFWELFDVFAIDEIKIFANLPKTWNSSDYFHTKAAALHERNRLDECCLGCNLCPAPHEIDDPEACDA-TPGFMGLPDHTAMEHEMILFFTCILSTVFACLECWSVSQRLALAGMMGALQPLFNRKKA-----ESAPPSVASG 507
BLAST of mRNA_P-wetherbeei_contig15455.1.1 vs. uniprot
Match: A0A6H5KNS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNS6_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 3.670e-15 Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 1
Query: 1 QVYVYSSNRWGYDFCDGSF---EGAVRVLEDDFERWQNSSDPASNAMASGRLWSAIVNGRPGDGCGASSGAAALFFSGADHRSAETLDLDVRWGGR 279
+VYVYS +WG+DFC+ F V ED FE W ++ + +SN MAS R W + NGR D CG +GA + FSGA+ R ETLD+D+R G R
Sbjct: 248 EVYVYSDEKWGFDFCEEEFMSGSAGAYVFEDTFEMW-DTENVSSNTMASAR-WDHVTNGRLSDVCGLGNGAGTMMFSGANFREVETLDVDMRSGIR 341
BLAST of mRNA_P-wetherbeei_contig15455.1.1 vs. uniprot
Match: A0A7K7WEL0_9AVES (Reelin (Fragment) n=5 Tax=Aves TaxID=8782 RepID=A0A7K7WEL0_9AVES) HSP 1 Score: 66.2 bits (160), Expect = 6.630e-8 Identity = 55/194 (28.35%), Postives = 86/194 (44.33%), Query Frame = 1
Query: 43 CDGSFEGAVRVLEDDFERWQNSSDPASNAMASGRLWSAIVNG---RPGDGCGASSGAAALFFSGADHRSAETLDLDVRWGGRLEFWLRMGPAAVVMADAAATAVAADAATCRP--AYGGSVHLSYSADGGGNWTELTTLQTFLYRGNDFSA---VEVELPGGAATPATRFRFVQKDFRNAD-EYWALDDVRVVA 597
CD F G E+ S + + W ++ G +P +GCG S ++L+F+ A R + DLD W ++F++++G D+ +C + V L YS +GG W L + +DFS V +ELP GA TP TRFR+ Q F + WALDD+ +++
Sbjct: 799 CDSGFRGTECQPENPLPSTVMSDFETPGGLKT--EWQEVIGGEIVKPEEGCGVISSGSSLYFNKAGKRQLVSWDLDTTWVDFVQFYIQIG---------------GDSPSCNAPDSREEGVLLQYSNNGGITWQLLAEMYF-----SDFSKPRFVYLELPAGAKTPCTRFRWWQPVFSGEGYDQWALDDIIILS 970
BLAST of mRNA_P-wetherbeei_contig15455.1.1 vs. uniprot
Match: UPI001BB1A7E6 (reelin-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1A7E6) HSP 1 Score: 58.9 bits (141), Expect = 1.420e-5 Identity = 64/197 (32.49%), Postives = 87/197 (44.16%), Query Frame = 1
Query: 43 CDGSFEGAVRVLEDDFERWQNSSDPASNAMASGRLWSAIVNGRP----GDGCGASSGAAALFFSGADHRSAETLDLDVRWGGRLEFWLRMGPAAVVMADAAATAVAADAATCRPAYGGS--VHLSYSADGGGNWTELTTLQTFLYRGNDFSAVEVELPGGAATPATRFRFVQKDFRNADEY---WALDDVRVVASLR 606
CD + GA L DD R +A A W+ I+ G G GCG S +L+F G R + D+ ++F++ +G +D +A CR A S V L YS DGG +W +L L Y F V ELP GA +PATRFR+ Q R+A Y WA+DD+ + R
Sbjct: 1042 CDRGYSGA-NCLPDD-PRLNAIQSNFEDASAINADWT-IIQGASIKCTGHGCGTVSSGCSLYFHGPGVRQLVSHDMSTVEPSYIQFYIEIG------SDEGRSA-------CRRATERSEGVLLQYSIDGGVSWVDLLELYYQDYTMPRF--VRKELPPGAQSPATRFRWRQP--RHAGAYTSQWAIDDIFIGNDFR 1218
BLAST of mRNA_P-wetherbeei_contig15455.1.1 vs. uniprot
Match: A0A7M7PR13_STRPU (Reelin n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PR13_STRPU) HSP 1 Score: 58.9 bits (141), Expect = 1.420e-5 Identity = 60/194 (30.93%), Postives = 82/194 (42.27%), Query Frame = 1
Query: 43 CDGSFEGAVRVLEDD--FERWQNSSDPASNAMASGRLWSAIVNGR---PGDGCGASSGAAALFFSGADHRSAETLDLDVRWGGRLEFWLRMGPAAVVMADAAATAVAADAATCRPAYGGSVHLSYSADGGGNWTELTTLQTFLYRGNDFSAVEVELPGGAATPATRFRFVQKDFRNA-DEYWALDDVRVVASLR 606
CD + G V L D+ Q++ + A+ A WS I G GCG S +L+F G R + D+ ++F++R+G A + AT A V L YS DGG W L L Y F V ELP GA +PATRFR+ Q A + WA+DD+ + R
Sbjct: 1054 CDRGYSG-VSCLPDNPRLNAIQSNFEEAATINAD---WSTIQGATIKCTGHGCGTISSGCSLYFHGPGVRQLVSHDMSTVEPSYIQFYIRIGSDEERSACSRATERAEG-----------VLLQYSTDGGITWLHLLELYYQDYTMPRF--VRKELPAGAQSPATRFRWRQPHHAGAFNSQWAVDDIFIGNDFR 1230 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15455.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig15455.1.1 >prot_P-wetherbeei_contig15455.1.1 ID=prot_P-wetherbeei_contig15455.1.1|Name=mRNA_P-wetherbeei_contig15455.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=402bp QVYVYSSNRWGYDFCDGSFEGAVRVLEDDFERWQNSSDPASNAMASGRLWback to top mRNA from alignment at P-wetherbeei_contig15455:399..1604+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig15455.1.1 ID=mRNA_P-wetherbeei_contig15455.1.1|Name=mRNA_P-wetherbeei_contig15455.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1206bp|location=Sequence derived from alignment at P-wetherbeei_contig15455:399..1604+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig15455:399..1604+ >mRNA_P-wetherbeei_contig15455.1.1 ID=mRNA_P-wetherbeei_contig15455.1.1|Name=mRNA_P-wetherbeei_contig15455.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1206bp|location=Sequence derived from alignment at P-wetherbeei_contig15455:399..1604+ (Phaeothamnion wetherbeei SAG_119_79)back to top |