mRNA_P-wetherbeei_contig1542.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1542.5.1
Unique NamemRNA_P-wetherbeei_contig1542.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1542.5.1 vs. uniprot
Match: D8LF26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF26_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.310e-19
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 2 
Query:  548 KEHNPFKDPIPSGSRWAWADEVKPVRYDEERLPIYTAASLRIGRGGGTDLCPFDCDCCF 724
            ++ NPF        RWAWADEVKPVR+D+E LPIYT  SLRIG+GGGT  CPFDCDCCF
Sbjct:  124 RQANPFTGEGGPDKRWAWADEVKPVRFDDEGLPIYTWESLRIGQGGGTAACPFDCDCCF 182
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BLAST of mRNA_P-wetherbeei_contig1542.5.1 vs. uniprot
Match: A0A3F2RN39_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RN39_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.120e-10
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:  608 EVKPVRYDEERLPIYTAASLRIGRGGGTDLCPFDCDCCF 724
            + +PVRYDE+ LPIYT ASL IG+GGGT  CPFDC CCF
Sbjct:  166 DARPVRYDEDGLPIYTEASLHIGKGGGTKDCPFDCWCCF 204
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BLAST of mRNA_P-wetherbeei_contig1542.5.1 vs. uniprot
Match: A0A3R7H044_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7H044_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.170e-10
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:  608 EVKPVRYDEERLPIYTAASLRIGRGGGTDLCPFDCDCCF 724
            + +PVRYDE+ LPIYT ASL IG+GGGT  CPFDC CCF
Sbjct:  167 DARPVRYDEDGLPIYTEASLHIGKGGGTKDCPFDCWCCF 205
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BLAST of mRNA_P-wetherbeei_contig1542.5.1 vs. uniprot
Match: G4ZRM9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZRM9_PHYSP)

HSP 1 Score: 66.2 bits (160), Expect = 8.460e-10
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 2 
Query:  608 EVKPVRYDEERLPIYTAASLRIGRGGGTDLCPFDCDCCF 724
            + +PVRYDE+ LPIYT ASL+IG GG T  CPFDC CCF
Sbjct:   81 DPRPVRYDEDGLPIYTEASLQIGNGGNTKDCPFDCWCCF 119
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BLAST of mRNA_P-wetherbeei_contig1542.5.1 vs. uniprot
Match: A0A0G4F5Z7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F5Z7_VITBC)

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-9
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:  614 KPVRYDEERLPIYTAASLRIGRGGGTDLCPFDCDCCF 724
            +P RY EE  PIYT   LRIG+GGGT LCPFDCDCCF
Sbjct:  133 RPRRYTEEGWPIYTEEELRIGQGGGTPLCPFDCDCCF 169
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BLAST of mRNA_P-wetherbeei_contig1542.5.1 vs. uniprot
Match: D0P317_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P317_PHYIT)

HSP 1 Score: 65.5 bits (158), Expect = 1.620e-9
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:  608 EVKPVRYDEERLPIYTAASLRIGRGGGTDLCPFDCDCCF 724
            + +PVRYDE+ LPIY+ ASL+IG+GG T  CPFDC CCF
Sbjct:   82 DPRPVRYDEDGLPIYSEASLQIGKGGNTKDCPFDCWCCF 120
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BLAST of mRNA_P-wetherbeei_contig1542.5.1 vs. uniprot
Match: W2R8Y5_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2R8Y5_PHYPN)

HSP 1 Score: 67.0 bits (162), Expect = 2.680e-9
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:  608 EVKPVRYDEERLPIYTAASLRIGRGGGTDLCPFDCDCCF 724
            + +PVRYDE+ LPIYT ASL+IG+GG T  CPFDC CCF
Sbjct:  166 DPRPVRYDEDGLPIYTEASLQIGKGGNTKDCPFDCWCCF 204
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BLAST of mRNA_P-wetherbeei_contig1542.5.1 vs. uniprot
Match: A0A0P1B5W0_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B5W0_PLAHL)

HSP 1 Score: 66.2 bits (160), Expect = 4.550e-9
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:  608 EVKPVRYDEERLPIYTAASLRIGRGGGTDLCPFDCDCCF 724
            + +PVRYDE+ LPIYT A+L+IG+GG T  CPFDC CCF
Sbjct:  161 DPRPVRYDEDGLPIYTEAALQIGKGGNTQDCPFDCWCCF 199
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BLAST of mRNA_P-wetherbeei_contig1542.5.1 vs. uniprot
Match: A0A2D4C8L2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8L2_PYTIN)

HSP 1 Score: 66.2 bits (160), Expect = 5.290e-9
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 2 
Query:  608 EVKPVRYDEERLPIYTAASLRIGRGGGTDLCPFDCDCCF 724
            + +PVRYDE+ LPIYT ASL+IG+GG T  CPFDC CCF
Sbjct:  170 DPRPVRYDEDGLPIYTEASLQIGKGGDTADCPFDCWCCF 208
[Close]
BLAST of mRNA_P-wetherbeei_contig1542.5.1 vs. uniprot
Match: A0A3M6VH65_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VH65_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 7.900e-9
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 2 
Query:  608 EVKPVRYDEERLPIYTAASLRIGRGGGTDLCPFDCDCCF 724
            + +PVRYDE+ LPIYT ASL+I RGG T  CPFDC CCF
Sbjct:  176 DPRPVRYDEDGLPIYTEASLQINRGGNTKDCPFDCWCCF 214
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1542.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF26_ECTSI2.310e-1967.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3F2RN39_9STRA3.120e-1071.79Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A3R7H044_9STRA3.170e-1071.79Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
G4ZRM9_PHYSP8.460e-1069.23Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A0G4F5Z7_VITBC1.400e-972.97Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
D0P317_PHYIT1.620e-966.67Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
W2R8Y5_PHYPN2.680e-969.23Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A0P1B5W0_PLAHL4.550e-966.67Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A2D4C8L2_PYTIN5.290e-969.23Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A3M6VH65_9STRA7.900e-969.23Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1542contigP-wetherbeei_contig1542:4271..5803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.7028
PFAMsDUF1764
Model size1157
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.85e-11
EggNOG OGs2E28N@1|root,2REF7@2759|Eukaryota,3QFHP@4776|Peronosporales
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_006470.1
DescriptionEukaryotic protein of unknown function (DUF1764)
Cds size702
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186055.2850642-UTR-P-wetherbeei_contig1542:4270..42951683186055.2850642-UTR-P-wetherbeei_contig1542:4270..4295Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1542 4271..4295 +
1683186055.3141725-UTR-P-wetherbeei_contig1542:5373..58031683186055.3141725-UTR-P-wetherbeei_contig1542:5373..5803Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1542 5374..5803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186055.2947905-CDS-P-wetherbeei_contig1542:4295..48901683186055.2947905-CDS-P-wetherbeei_contig1542:4295..4890Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1542 4296..4890 +
1683186055.304104-CDS-P-wetherbeei_contig1542:5266..53731683186055.304104-CDS-P-wetherbeei_contig1542:5266..5373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1542 5267..5373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1542.5.1prot_P-wetherbeei_contig1542.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1542 4296..5373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1542.5.1

>prot_P-wetherbeei_contig1542.5.1 ID=prot_P-wetherbeei_contig1542.5.1|Name=mRNA_P-wetherbeei_contig1542.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=234bp
MTGASGSSGNGDGGKGMGKAQVARASTQPRSFEARDGGERSKDGAARSSS
LGLRLDLLLVEPQRDDNPKKKRKRCNDGGASRSVNLGRREVTAGTKGAAA
AAAAPSRTPDNDVEAGAAMVAIKSSKLAMDNIFGAINEAKQAKKLTKAAT
SGSSGGNGGSTGGAAFSGPISRPPKEHNPFKDPIPSGSRWAWADEVKPVR
YDEERLPIYTAASLRIGRGGGTDLCPFDCDCCF*
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mRNA from alignment at P-wetherbeei_contig1542:4271..5803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1542.5.1 ID=mRNA_P-wetherbeei_contig1542.5.1|Name=mRNA_P-wetherbeei_contig1542.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1533bp|location=Sequence derived from alignment at P-wetherbeei_contig1542:4271..5803+ (Phaeothamnion wetherbeei SAG_119_79)
AGAAAGAGAAAAAGTAGAGAACGCAATGACAGGCGCCAGTGGCAGCTCAG
GCAACGGCGACGGTGGCAAGGGCATGGGCAAGGCACAAGTCGCTCGTGCC
TCGACGCAACCTCGCTCCTTTGAGGCCAGAGATGGAGGAGAGAGGTCGAA
AGATGGTGCTGCTCGATCCTCTTCGTTGGGCCTAAGACTAGATCTGCTGC
TGGTTGAACCCCAGAGGGACGATAACCCCAAAAAGAAGCGAAAACGTTGT
AATGATGGTGGCGCAAGCAGAAGCGTCAACTTGGGAAGGAGAGAAGTGAC
GGCGGGAACGAAGGGCGCTGCCGCCGCCGCCGCCGCGCCGTCTCGTACGC
CCGACAATGACGTCGAGGCCGGGGCGGCTATGGTGGCTATCAAATCGAGC
AAATTGGCAATGGACAACATTTTTGGGGCGATTAACGAAGCAAAGCAGGC
GAAAAAGCTAACAAAGGCTGCTACCAGCGGCAGCAGCGGCGGCAACGGCG
GCAGTACAGGCGGCGCTGCCTTTTCGGGGCCAATATCACGTCCTCCAAAA
GAACACAACCCATTCAAGGATCCGATTCCGTCTGGCAGCCGCTGGGCGTG
GGCAGACGAGGTGAAGCCAGGTAGGAACAGAGGCATTTTTGGTTGTTTTC
CGATGCTTTCGGCCGCCGTAACGTAGATAAGGGGACCGCGCCGCGCTGTA
GACAGTTTGTTTTGCAGGGGTGCCCAGCCGCTGTGGAGGCGCATTTTATT
GCTTTTGTGTGCCTGGCCAATGAGAAGTCCCGCGAAGCATTCTGGCACCG
CTTGCAGCGCTGCGCACTCTCCTCTTCTTTTTCTTCATTTACCGTCTCCT
CTTTCCGAGAGACAGCCATATGAATGATCTGATATCCACTGCCTTTCGTC
CTCCCAAATGCATCGCCGCCGCCGCCGCCGCCGCTGCCACCTGCCGGTGC
CATGATCCCTCTTGCCCGTCCGTCCGCTGTACTCCTCCGCCGGTAGTGCG
CTACGACGAGGAAAGGCTGCCCATCTACACAGCGGCGTCGCTCCGCATCG
GGCGCGGCGGCGGGACCGACCTGTGCCCCTTCGACTGCGACTGCTGCTTT
TGAGTTGTGGAACAGTCGGCGGGGACAACGTACCCTCGGGAACCACCAGC
AGACAGATAAGACCTGCTGCGCCGAACCTGACCGGACCAGGTCGGCGGCT
TGTTGGCGGCTCGGCGCTGGAACGAACGGCGCGACAGTGTCTTTTGGAGG
TATGTCGAAGCTCCCAGAACCATATGGTGTGTGGGGGTAAAGTGGTGGCG
AGGATGGCCCTCTCTCTCCCCGTTTGCGCGATGGGGTTGCCGAACCGTGT
GTAATACAGAAAGGGTGAGATGCTGACGTGCTACAAGTCTCTTACCTCTC
TGCTCGGGATGTTTGACATGGTCCTCCTTTGGAGGCTATGCCCCAAGACA
ATGCTCTCTCACTCCATGAGCGGGGAATGCCCACCATGTTGGGCTGGGTG
GGCAATAATGTGTCGCGAGATGCGCCTTTGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1542:4271..5803+

>mRNA_P-wetherbeei_contig1542.5.1 ID=mRNA_P-wetherbeei_contig1542.5.1|Name=mRNA_P-wetherbeei_contig1542.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig1542:4271..5803+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGGCGCCAGTGGCAGCTCAGGCAACGGCGACGGTGGCAAGGGCAT
GGGCAAGGCACAAGTCGCTCGTGCCTCGACGCAACCTCGCTCCTTTGAGG
CCAGAGATGGAGGAGAGAGGTCGAAAGATGGTGCTGCTCGATCCTCTTCG
TTGGGCCTAAGACTAGATCTGCTGCTGGTTGAACCCCAGAGGGACGATAA
CCCCAAAAAGAAGCGAAAACGTTGTAATGATGGTGGCGCAAGCAGAAGCG
TCAACTTGGGAAGGAGAGAAGTGACGGCGGGAACGAAGGGCGCTGCCGCC
GCCGCCGCCGCGCCGTCTCGTACGCCCGACAATGACGTCGAGGCCGGGGC
GGCTATGGTGGCTATCAAATCGAGCAAATTGGCAATGGACAACATTTTTG
GGGCGATTAACGAAGCAAAGCAGGCGAAAAAGCTAACAAAGGCTGCTACC
AGCGGCAGCAGCGGCGGCAACGGCGGCAGTACAGGCGGCGCTGCCTTTTC
GGGGCCAATATCACGTCCTCCAAAAGAACACAACCCATTCAAGGATCCGA
TTCCGTCTGGCAGCCGCTGGGCGTGGGCAGACGAGGTGAAGCCAGTGCGC
TACGACGAGGAAAGGCTGCCCATCTACACAGCGGCGTCGCTCCGCATCGG
GCGCGGCGGCGGGACCGACCTGTGCCCCTTCGACTGCGACTGCTGCTTTT
GA
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