mRNA_P-wetherbeei_contig1542.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1542.4.1
Unique NamemRNA_P-wetherbeei_contig1542.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1542.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1542contigP-wetherbeei_contig1542:3029..3580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size552
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186055.3506203-UTR-P-wetherbeei_contig1542:3028..30681683186055.3506203-UTR-P-wetherbeei_contig1542:3028..3068Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1542 3029..3068 -
1683186055.3709168-UTR-P-wetherbeei_contig1542:3410..35801683186055.3709168-UTR-P-wetherbeei_contig1542:3410..3580Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1542 3411..3580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186055.3622725-CDS-P-wetherbeei_contig1542:3068..34101683186055.3622725-CDS-P-wetherbeei_contig1542:3068..3410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1542 3069..3410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1542.4.1prot_P-wetherbeei_contig1542.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1542 3069..3410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1542.4.1

>prot_P-wetherbeei_contig1542.4.1 ID=prot_P-wetherbeei_contig1542.4.1|Name=mRNA_P-wetherbeei_contig1542.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
MCGLTRCQSLDVTLSLSLLLPLHLPPLPPSCGGFRLQPAPPSIPLARAIG
CLPADFCTAAEFGAKNLGTSNDSWRRRAAKRLRRRQRWNVGGGGDDGNIT
TTMATSPWRWRWR*
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mRNA from alignment at P-wetherbeei_contig1542:3029..3580-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1542.4.1 ID=mRNA_P-wetherbeei_contig1542.4.1|Name=mRNA_P-wetherbeei_contig1542.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig1542:3029..3580- (Phaeothamnion wetherbeei SAG_119_79)
TGTCGGGGCACTCCGTGAGGTGCTGCGCGTGTACCTCGGCAGTCAGGGGT
GGTTGCCAGCTCTGCTTCTTTGCTCTGTGTTGAATTCGTGGCGCTTTCAA
CGTTGCTTTGCGAAAGCTGCTTTTGCGTATCCCGGTGGAAGAATAGATTT
GCTCGTTGAAGGCGGTTGGAATGTGCGGGCTAACCCGCTGCCAGAGTCTC
GACGTCACTCTCTCTCTCTCTCTCTTGCTTCCTCTCCATTTGCCTCCGTT
GCCTCCCTCATGCGGCGGCTTTCGATTGCAACCTGCCCCTCCCTCCATCC
CTCTCGCACGCGCTATCGGGTGTCTCCCCGCTGACTTTTGCACGGCGGCG
GAATTTGGTGCGAAAAATCTCGGCACGTCAAACGATTCGTGGCGGCGGCG
GGCGGCTAAACGTCTGCGGCGGCGACAACGATGGAACGTCGGCGGTGGCG
GCGACGATGGAAACATCACAACGACGATGGCAACATCACCATGGCGATGG
CGGTGGCGGTGATGGCAACGGTGGCGGCTTCTGCTGCGGCATGGGGCGAC
TG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1542:3029..3580-

>mRNA_P-wetherbeei_contig1542.4.1 ID=mRNA_P-wetherbeei_contig1542.4.1|Name=mRNA_P-wetherbeei_contig1542.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig1542:3029..3580- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCGGGCTAACCCGCTGCCAGAGTCTCGACGTCACTCTCTCTCTCTC
TCTCTTGCTTCCTCTCCATTTGCCTCCGTTGCCTCCCTCATGCGGCGGCT
TTCGATTGCAACCTGCCCCTCCCTCCATCCCTCTCGCACGCGCTATCGGG
TGTCTCCCCGCTGACTTTTGCACGGCGGCGGAATTTGGTGCGAAAAATCT
CGGCACGTCAAACGATTCGTGGCGGCGGCGGGCGGCTAAACGTCTGCGGC
GGCGACAACGATGGAACGTCGGCGGTGGCGGCGACGATGGAAACATCACA
ACGACGATGGCAACATCACCATGGCGATGGCGGTGGCGGTGA
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