mRNA_P-wetherbeei_contig1542.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1542.1.1
Unique NamemRNA_P-wetherbeei_contig1542.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1542.1.1 vs. uniprot
Match: A0A4D9CTC2_9STRA (SAP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTC2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 9.040e-8
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 2 
Query:  692 RRRGCHHYRTKTMQGKTDEAKRDMERLAAVKARREAAAXXXXXXXXXXXXXXDKVKGAXXXXXXXXXXXGGESFEHFGPIEIKKMNPTKLKELLKQRSLSLQGSKKDL 1015
            R +    Y  +  +G+T+EAK+D+ RLA V+ARRE AA              ++++             GG++ E   P E+KKM+ TKLKE LK+R LS QG KK+L
Sbjct:  150 REKAREEYLRRYREGETEEAKKDLARLAEVRARREQAARKKEEEVKAREALNERLR-LGAEAAEAGAGEGGKTIEALDPREVKKMSGTKLKECLKERGLSTQGQKKEL 256
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BLAST of mRNA_P-wetherbeei_contig1542.1.1 vs. uniprot
Match: W7TPJ1_9STRA (DNA-binding SAP n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPJ1_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.740e-7
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 2 
Query:  692 RRRGCHHYRTKTMQGKTDEAKRDMERLAAVKARREAAAXXXXXXXXXXXXXXDKVKGAXXXXXXXXXXXGGESFEHFGPIEIKKMNPTKLKELLKQRSLSLQGSKKDL 1015
            R +    Y  +  +G+T+EAK+D+ RLA V+ARRE AA              ++++             GG++ E   P EIKKM+ TKLKE LK+R LS QG KK+L
Sbjct:  189 REKAREEYLRRYREGETEEAKKDLARLAEVRARREEAARKKEEEVKAREALNERLR-LGAEAAEAGAGEGGKAIEALDPREIKKMSGTKLKECLKERGLSTQGQKKEL 295
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BLAST of mRNA_P-wetherbeei_contig1542.1.1 vs. uniprot
Match: A0A6H5JYK5_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK5_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 6.840e-7
Identity = 60/105 (57.14%), Postives = 68/105 (64.76%), Query Frame = 2 
Query:  710 HYRTKTMQGKTDEAKRDMERLAAVKARREAAAXXXXXXXXXXXXXXDKVKGAXXXXXXXXXXXGGESFEHFGPIEIKKMNPTKLKELLKQRSLSLQGSKKDLQVR 1024
            HY     +GKT EA+ DM RLA V+ RRE A     XXXXXXXXXX         XXXXXXX G    +   P+E+KKMNPT+LKELLK+R  SLQGSKKDL  R
Sbjct:  153 HYMKLHAEGKTQEAQVDMARLALVRKRREEAEARKAXXXXXXXXXXXXXX-----XXXXXXXAGSGGPQKLNPLEVKKMNPTRLKELLKERDESLQGSKKDLIAR 252
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BLAST of mRNA_P-wetherbeei_contig1542.1.1 vs. uniprot
Match: D7FHS2_ECTSI (Similar to PDGF associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS2_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.290e-6
Identity = 65/105 (61.90%), Postives = 73/105 (69.52%), Query Frame = 2 
Query:  710 HYRTKTMQGKTDEAKRDMERLAAVKARREAAAXXXXXXXXXXXXXXDKVKGAXXXXXXXXXXXGGESFEHFGPIEIKKMNPTKLKELLKQRSLSLQGSKKDLQVR 1024
            HY     +GKT EA+ DM RLA V+ RRE A   XXXXXXXXXXXX       XXXXXXXXXXGG   +   P+E+KKMNPT+LKELLK+R  SL GSKKDL  R
Sbjct:   58 HYMKLHAEGKTQEAQVDMARLALVRKRREEAEARXXXXXXXXXXXXXXXX---XXXXXXXXXXGGP--QKLNPLEVKKMNPTRLKELLKERDESLHGSKKDLIAR 157
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BLAST of mRNA_P-wetherbeei_contig1542.1.1 vs. uniprot
Match: A0A7S2SP28_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SP28_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.220e-6
Identity = 42/104 (40.38%), Postives = 48/104 (46.15%), Query Frame = 2 
Query:  713 YRTKTMQGKTDEAKRDMERLAAVKARREAAAXXXXXXXXXXXXXXDKVKGAXXXXXXXXXXXGGESFEHFGPIEIKKMNPTKLKELLKQRSLSLQGSKKDLQVR 1024
            Y+    QGKTDE K+DMERL   + RRE A                  + A             E  E   P EIKKMNP +LK+ LK R LS QG KKDL  R
Sbjct:  156 YQRLHAQGKTDEYKKDMERLQEARKRREEAEQKSKDNEDARAAEEKAARKAAVDVDEDE-----EDVEKLDPREIKKMNPKQLKDQLKSRGLSTQGQKKDLMAR 254
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1542.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4D9CTC2_9STRA9.040e-837.96SAP domain-containing protein n=1 Tax=Nannochlorop... [more]
W7TPJ1_9STRA1.740e-738.89DNA-binding SAP n=1 Tax=Nannochloropsis gaditana T... [more]
A0A6H5JYK5_9PHAE6.840e-757.14SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FHS2_ECTSI1.290e-661.90Similar to PDGF associated protein n=1 Tax=Ectocar... [more]
A0A7S2SP28_9STRA5.220e-640.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1542contigP-wetherbeei_contig1542:448..2873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHS2
Preferred namePDAP1
PFAMsPP28
Model size1998
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006810,GO:0006887,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008283,GO:0009987,GO:0012505,GO:0016020,GO:0016192,GO:0019838,GO:0023052,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0032940,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0043299,GO:0043312,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048008,GO:0048407,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0065007,GO:0070013,GO:0071944,GO:0097159,GO:0097708,GO:0099503,GO:0101002,GO:1901363,GO:1904813
Exons2
Evalue1.23e-06
EggNOG OGsKOG3375@1|root,KOG3375@2759|Eukaryota
DescriptionCasein kinase substrate phosphoprotein PP28
Cds size819
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186055.4015331-UTR-P-wetherbeei_contig1542:447..8991683186055.4015331-UTR-P-wetherbeei_contig1542:447..899Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1542 448..899 -
1683186055.43637-UTR-P-wetherbeei_contig1542:2146..28731683186055.43637-UTR-P-wetherbeei_contig1542:2146..2873Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1542 2147..2873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186055.4157531-CDS-P-wetherbeei_contig1542:899..16191683186055.4157531-CDS-P-wetherbeei_contig1542:899..1619Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1542 900..1619 -
1683186055.425865-CDS-P-wetherbeei_contig1542:2047..21461683186055.425865-CDS-P-wetherbeei_contig1542:2047..2146Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1542 2048..2146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1542.1.1prot_P-wetherbeei_contig1542.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1542 900..2146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1542.1.1

>prot_P-wetherbeei_contig1542.1.1 ID=prot_P-wetherbeei_contig1542.1.1|Name=mRNA_P-wetherbeei_contig1542.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=273bp
MQGKTDEAKRDMERLAAVKARREAAAKAKAEAEADTKAEEDKVKGAAAAA
GGGGGKGGGESFEHFGPIEIKKMNPTKLKELLKQRSLSLQGSKKDLQVRS
SLRWAAVLVAAHCFMGRESRGLAELGKSQTCDKRSNGAESEGSDSLCVID
RDVADGMKGSSLSPAGPCVFDEPALLSSPVTPSRHPPFTGRADACLADFS
DVRYKTLPASFAAATTALLFCTVSLSPLRCRRDLSSGRARTADGTGAALS
LPGALPSALRASPDATAPNGLE*
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mRNA from alignment at P-wetherbeei_contig1542:448..2873-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1542.1.1 ID=mRNA_P-wetherbeei_contig1542.1.1|Name=mRNA_P-wetherbeei_contig1542.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2426bp|location=Sequence derived from alignment at P-wetherbeei_contig1542:448..2873- (Phaeothamnion wetherbeei SAG_119_79)
GCCGAGCCGCAGCAGCTCTCGCGCCGCGAGCGTGAGGCCCTCGAGGCCGA
GCGGAAAAAAGCTCACTACGACAAGCTCCACGCAGAGGTCAGTCCGGCGA
GGTGATCGAGCAGTGCGAAACCAGTCGGGACAGCTGGGACAAGTCAGCAG
GGCGGCTGGCGGTGGGCGGCTGGCAGTTATTAAGTCTGCACACAGCGGGC
AGGCGAGGGGAGGCGAGGCGGGAAAGAGGCGGGCCAAGCGAAGCAAGCCA
GCAAGGCGGTTGGGCAGTGGATTTTGGGAAATGGGATACATCGGTGTTTT
GGCGTGCCCTGCGTGTCGGTTCCTTTCATTTTTGTCAAAATTATATGGCA
GCGATTTGCGTAGAGCGGGGATTCAGGTCGAAGGCATTTGGGTGGAGGTG
GTTGAGTGTTGGCTTCTTTGCGCAACAAGATGGCATCACAGGCATATATC
TATTTGTTGGCGTGTTTTGCCGTGGTAATTTGTTCGCTGAGGAAGGCCTC
TCTGTTACCAACTTCTATTTCCTCTTATCTTCTCCTACCCCCCCCGCCGC
CGCTGCATTGCCGCCTCGCTGTTCCCTGCTTCATCATTTTCCTCTTTGCC
CCGCCTCCTTTTTTTCGGATTGGACCGGCCCCGCCCGGTCGCCCTTCACT
TCCTTCCTTCGCTGCCGCCGCCGACGCCCAACCGCCGTATTCGCCGCCGT
GGTTGCCACCATTACCGCACTAAAACGATGCAGGGCAAGACGGACGAAGC
CAAGCGGGACATGGAGCGGCTGGCGGCGGTGAAGGCGCGACGGGAGGCTG
CCGCCAAGGCCAAAGCCGAAGCCGAGGTGAGCCCGTGGGCGTGCATGCGC
TATTTCCAAAACTCTTCCGAACCGGTCCCGACCCGATTGAGCGGTTGCCG
CCAGGGGTCGCGTGAACGCCGTTTCCGCAGTCGCTGGCCGAGCTCTGAGC
AATGGCACCTCTTGTGGCACGGCGGCCCAACAGGTGATGAGGCGATGGGC
CACCCCTGCCAATGCCAGGAGGTTGGCAAGACTGCCACCAGTTTAACTCT
AGACCTAAGCTATGGGTTGGCGACAGCCGCCGGGTCGGCGGAGCTGACAC
GTAGTGCCATTGGCGGAGCCGACGCATGTTGCCACCTGTGTCCTGAAACA
TTTCGTACCTCTTTCTGTTATGTTGCCGCTCTCGGCTTCGCCTCCGTCAT
CGAACGCGGACGGCTTCCAACGATGAAACCGTGGGACGGTGCGCGTGATA
ACAGGCGGACACGAAGGCTGAGGAGGACAAGGTAAAGGGGGCGGCGGCGG
CGGCGGGCGGCGGGGGCGGCAAGGGCGGCGGGGAAAGCTTTGAGCACTTC
GGGCCGATCGAAATCAAGAAGATGAACCCCACCAAGCTCAAGGAGCTGCT
CAAGCAGAGGAGCCTCAGCTTGCAGGGCAGCAAGAAGGATCTCCAGGTGC
GTTCGTCGCTGCGATGGGCGGCTGTGCTGGTTGCTGCGCACTGTTTTATG
GGCAGGGAGAGCAGGGGTTTGGCCGAGCTGGGAAAATCGCAGACTTGCGA
CAAGCGTTCGAATGGGGCGGAATCCGAGGGATCTGATTCACTTTGCGTGA
TAGATCGCGACGTCGCTGATGGAATGAAAGGATCTTCTCTTTCGCCAGCC
GGCCCTTGTGTCTTCGATGAACCTGCGTTGCTGTCCTCTCCCGTCACCCC
CAGCCGTCATCCCCCCTTTACGGGAAGGGCGGATGCATGTCTTGCGGACT
TTTCTGACGTTCGTTACAAGACGCTGCCCGCCTCGTTTGCTGCCGCAACC
ACTGCCCTCCTTTTTTGTACCGTTTCGCTCTCTCCGCTGCGCTGCAGACG
CGACTTATCGAGTGGGAGGGCGAGAACAGCTGATGGAACGGGAGCGGCAC
TGTCGCTGCCGGGTGCTCTTCCCAGTGCTCTCCGCGCGTCACCGGATGCC
ACAGCGCCTAACGGGCTCGAGTGAGCCGATGTCAGTTGCTGGCTGCCGCG
GACGGCGGTGCTGCGTCCGCTACCTGCCGCTGCGGTTGCTTCTGCACAAG
GCTGGCCAAACGGATTCGGACTGGCCTGCCTCTGCGGTTGTCCACACATA
GCAACTTGTTACTGATTTGGAAAGAAACTTTCTAGTTCGGTCCGGCAATA
TTTGCGTGCGCCTCTCTCCTGTCGCGGGCTGGCCTCGGCGGTGCCAGCGG
CTGCGGCGAAAGAGTCGACACTTCCGCGTCGCCTGCTTCCTTCGGCGGTC
CAACGGCAACGGCCACACCGCTGCTGGTGTGGCGGACACTGGCAGTTTCT
GGTGTTGTAGGGATTTAGGTAACCGGATTCCTGGAAGGCCATCTTGTTAA
AAGAAATGAATCGACCACACTGCAAAAATTACATTTCTGCTTTCTCATCT
AACATGTCCTTGCAAACCGATCAGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1542:448..2873-

>mRNA_P-wetherbeei_contig1542.1.1 ID=mRNA_P-wetherbeei_contig1542.1.1|Name=mRNA_P-wetherbeei_contig1542.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=819bp|location=Sequence derived from alignment at P-wetherbeei_contig1542:448..2873- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGGCAAGACGGACGAAGCCAAGCGGGACATGGAGCGGCTGGCGGC
GGTGAAGGCGCGACGGGAGGCTGCCGCCAAGGCCAAAGCCGAAGCCGAGG
CGGACACGAAGGCTGAGGAGGACAAGGTAAAGGGGGCGGCGGCGGCGGCG
GGCGGCGGGGGCGGCAAGGGCGGCGGGGAAAGCTTTGAGCACTTCGGGCC
GATCGAAATCAAGAAGATGAACCCCACCAAGCTCAAGGAGCTGCTCAAGC
AGAGGAGCCTCAGCTTGCAGGGCAGCAAGAAGGATCTCCAGGTGCGTTCG
TCGCTGCGATGGGCGGCTGTGCTGGTTGCTGCGCACTGTTTTATGGGCAG
GGAGAGCAGGGGTTTGGCCGAGCTGGGAAAATCGCAGACTTGCGACAAGC
GTTCGAATGGGGCGGAATCCGAGGGATCTGATTCACTTTGCGTGATAGAT
CGCGACGTCGCTGATGGAATGAAAGGATCTTCTCTTTCGCCAGCCGGCCC
TTGTGTCTTCGATGAACCTGCGTTGCTGTCCTCTCCCGTCACCCCCAGCC
GTCATCCCCCCTTTACGGGAAGGGCGGATGCATGTCTTGCGGACTTTTCT
GACGTTCGTTACAAGACGCTGCCCGCCTCGTTTGCTGCCGCAACCACTGC
CCTCCTTTTTTGTACCGTTTCGCTCTCTCCGCTGCGCTGCAGACGCGACT
TATCGAGTGGGAGGGCGAGAACAGCTGATGGAACGGGAGCGGCACTGTCG
CTGCCGGGTGCTCTTCCCAGTGCTCTCCGCGCGTCACCGGATGCCACAGC
GCCTAACGGGCTCGAGTGA
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