mRNA_P-wetherbeei_contig15399.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15399.1.1
Unique NamemRNA_P-wetherbeei_contig15399.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15399.1.1 vs. uniprot
Match: A0A835YQM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.350e-27
Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = 1
Query:    1 LLACRSEKASNEAMDRMSLEIELEQLAIREDMRIP-VKGKATFMLLDLASLESVRSFTEAFKKEGLPLDVLVLNAGVMMDASLSLFLLGRRAESADGHEMHWAVNHLGHFLLANLLLPKLEKSKDGRIIVLSSS 399
            +LACRSE+ + EA++ M+  +       R    +P ++GKATFM LDL SL+SVR+F   ++K  LPLDVLVLNAGVMM         GRR  + DG E  +AVNHL HFLLA  LLP +E+S +GRI++L+S+
Sbjct:  140 ILACRSEERAKEAIETMTRGLLNVAALERPRGGVPTLRGKATFMPLDLCSLKSVRNFATEYRKRKLPLDVLVLNAGVMM---------GRRTVTEDGFETTFAVNHLAHFLLARELLPLVERSAEGRIVILTSA 264          
BLAST of mRNA_P-wetherbeei_contig15399.1.1 vs. uniprot
Match: D7G717_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G717_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.130e-22
Identity = 59/133 (44.36%), Postives = 85/133 (63.91%), Query Frame = 1
Query:    1 LLACRSEKASNEAMDRMSLEIELEQLAIREDMRIPVKGKATFMLLDLASLESVRSFTEAFKKEGLPLDVLVLNAGVMMDASLSLFLLGRRAESADGHEMHWAVNHLGHFLLANLLLPKLEKSKDGRIIVLSSS 399
            ++ACRSE+ + +A++ ++ E+E    AIR +    +KGK TFM LDL+SL +VR F   FK   L LD L+LNAGVM          G R  + +G E + AVN+LG+FLL   LLP L++S DGR++ ++SS
Sbjct:  132 IMACRSEEKARKAIEDITFELEAAAKAIRHNTDTGIKGKLTFMKLDLSSLAAVRVFVAEFKASKLGLDSLILNAGVMH---------GCRKVTEEGLEANLAVNYLGNFLLTTQLLPLLKQSPDGRVLCVNSS 255          
BLAST of mRNA_P-wetherbeei_contig15399.1.1 vs. uniprot
Match: A0A6H5J7F6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.390e-22
Identity = 59/131 (45.04%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    7 ACRSEKASNEAMDRMSLEIELEQLAIREDMRIPVKGKATFMLLDLASLESVRSFTEAFKKEGLPLDVLVLNAGVMMDASLSLFLLGRRAESADGHEMHWAVNHLGHFLLANLLLPKLEKSKDGRIIVLSSS 399
            ACRSE+ + +A++ ++ E+E    AIR +    +KGK TFM LDL+SL +VR F   FK   L LD L+LNAGVM          G R  + +G E + AVN+LG+FLL   LLP L++S DGR++ ++SS
Sbjct:  106 ACRSEEKARKAIENITFELEAAAKAIRHNTDTGIKGKLTFMKLDLSSLAAVRVFVAEFKASKLGLDSLILNAGVMH---------GCRKVTEEGLEANLAVNYLGNFLLTTQLLPLLKQSPDGRVLCVNSS 227          
BLAST of mRNA_P-wetherbeei_contig15399.1.1 vs. uniprot
Match: A0A7M7NS27_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NS27_STRPU)

HSP 1 Score: 94.4 bits (233), Expect = 6.110e-21
Identity = 58/136 (42.65%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 LLACRSEKASNEAMDRMSLEIELEQLAIREDMRIPVKGK---ATFMLLDLASLESVRSFTEAFKKEGLPLDVLVLNAGVMMDASLSLFLLGRRAESADGHEMHWAVNHLGHFLLANLLLPKLEKSKDGRIIVLSSS 399
            ++ACRSE  +NEAM+RM +E   E+ A  +  ++ +K       FM LDL+S+ S  SF E FK +GLPL +LV NAG+           G   ++ADG E+H+ VN+L HFLL   LLP L+ S+    I+L SS
Sbjct:   46 IVACRSEAKANEAMERMKME-HSEEKADDKKSKVEIKANDLDVEFMTLDLSSIASTMSFVEEFKAKGLPLHILVCNAGMAY---------GGEVKTADGFELHFQVNYLSHFLLTLHLLPVLKASRGNAKIILVSS 171          
BLAST of mRNA_P-wetherbeei_contig15399.1.1 vs. uniprot
Match: A0A3M6V5M5_POCDA (Uncharacterized protein (Fragment) n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6V5M5_POCDA)

HSP 1 Score: 94.0 bits (232), Expect = 2.410e-20
Identity = 60/133 (45.11%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    1 LLACRSEKASNEAMDRMSLEIELEQLAIREDMRIPVKGKATFMLLDLASLESVRSFTEAFKKEGLPLDVLVLNAGVMMDASLSLFLLGRRAESADGHEMHWAVNHLGHFLLANLLLPKLEKSKDGRIIVLSSS 399
            +LACRS +   +A D +  ++         D  + VK       LDL+SLESVR+F     KE + LDVL+ NAGV MD  +         ++ DG EMH+ VNHLGHFLL NLLL  LEKS   RI+V+SSS
Sbjct:   72 ILACRSLEKGQKAADEIRAKV--------RDATVVVKS------LDLSSLESVRTFASEILKEEVRLDVLINNAGVYMDPPVP--------KTQDGFEMHFGVNHLGHFLLTNLLLDLLEKSSPSRIVVVSSS 182          
BLAST of mRNA_P-wetherbeei_contig15399.1.1 vs. uniprot
Match: UPI000C1C2106 (SDR family oxidoreductase n=1 Tax=Lentibacillus sediminis TaxID=1940529 RepID=UPI000C1C2106)

HSP 1 Score: 91.3 bits (225), Expect = 1.190e-19
Identity = 55/132 (41.67%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    1 LLACRSEKASNEAMDRMSLEIELEQLAIREDMRIPVKGKATFMLLDLASLESVRSFTEAFKKEGLPLDVLVLNAGVMMDASLSLFLLGRRAESADGHEMHWAVNHLGHFLLANLLLPKLEKSKDGRIIVLSS 396
            ++ACR+E+    A++             R+  R P       MLLDLASL+SVR F + FK     LD+++ NAGV+           +RAE+ DG E+   VNHLGHFLL NLLL +L++S+DGRI+++SS
Sbjct:   29 VMACRNEEKGKTALEEA-----------RKKSRTP---HIDMMLLDLASLQSVRDFVDEFKTRYDRLDIIINNAGVVTP---------KRAETKDGFELEMGVNHLGHFLLTNLLLEQLKESEDGRIVIISS 137          
BLAST of mRNA_P-wetherbeei_contig15399.1.1 vs. uniprot
Match: A0A7M7HR10_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HR10_STRPU)

HSP 1 Score: 91.7 bits (226), Expect = 1.720e-19
Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 LLACRSEKASNEAMDRMSLEIELEQLAIREDMRIPVKGK---ATFMLLDLASLESVRSFTEAFKKEGLPLDVLVLNAGVMMDASLSLFLLGRRAESADGHEMHWAVNHLGHFLLANLLLPKLEKSKDGRIIVLSSS 399
            ++ACRSE  +NEA++RM  E   E+ +  ++ ++ +K       FM+LDL+S+ S  SF EAFK +GLPL +LV NAG+         + G   ++ DG E+H+ VN+L HFLL   LLP L+ S     I+L SS
Sbjct:   46 IVACRSEAKANEAIERMKKE-HSEEKSDDKESKVKIKTDDLDVEFMILDLSSIASTMSFVEAFKAKGLPLHILVCNAGI---------IYGGEVKTTDGFEIHFQVNYLSHFLLTLHLLPVLKASGGNAKIILVSS 171          
BLAST of mRNA_P-wetherbeei_contig15399.1.1 vs. uniprot
Match: A0A6P6JJJ0_CARAU (dehydrogenase/reductase SDR family member on chromosome X isoform X3 n=18 Tax=Cyprinidae TaxID=7953 RepID=A0A6P6JJJ0_CARAU)

HSP 1 Score: 89.4 bits (220), Expect = 7.300e-19
Identity = 54/101 (53.47%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  109 KGKATFMLLDLASLESVRSFTEAFKKEGLPLDVLVLNAGVMMDASLSLFLLGRRAESADGHEMHWAVNHLGHFLLANLLLPKLEKS----KDGRIIVLSSS 399
            +GK  FM LDLASL SVR+F + +K +GLPL VLV NAGVM+          RR E  DG E+H+ +N+LGHFLL NLLL  L+KS    K  RI+V+SS+
Sbjct:   55 QGKVEFMYLDLASLTSVRNFVQRYKAKGLPLHVLVNNAGVMLVPE-------RRTE--DGFELHFGLNYLGHFLLTNLLLDVLKKSGKPGKCSRIVVMSSA 146          
BLAST of mRNA_P-wetherbeei_contig15399.1.1 vs. uniprot
Match: A0A7M7PG22_STRPU (Uncharacterized protein n=2 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7PG22_STRPU)

HSP 1 Score: 89.4 bits (220), Expect = 8.770e-19
Identity = 58/131 (44.27%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    1 LLACRSEKASNEAMDRMSLEIELEQL-AIREDMRIPVKG-KATFMLLDLASLESVRSFTEAFKKEGLPLDVLVLNAGVMMDASLSLFLLGRRAESADGHEMHWAVNHLGHFLLANLLLPKLEKSKDGRIIV 387
            +LACRSE  +N+A+ RM  E E E+    ++ ++I V      FM LDLASLES  +F EA+K  GLPL VLV NAG+           G +A ++DG+E H+ +N+L HFLL   LLP L++S  G  +V
Sbjct:   22 ILACRSECKANQAIYRMKREHEEEKSDPTKQKVQIKVDDLHVEFMTLDLASLESTVTFIEAYKSRGLPLHVLVCNAGIFC---------GPKALTSDGYEPHFQINYLSHFLLILHLLPVLKRSGPGSRVV 143          
BLAST of mRNA_P-wetherbeei_contig15399.1.1 vs. uniprot
Match: A0A8J6C6S1_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C6S1_DIALT)

HSP 1 Score: 89.7 bits (221), Expect = 1.430e-18
Identity = 65/135 (48.15%), Postives = 79/135 (58.52%), Query Frame = 1
Query:    1 LLACRSEKASNEAMDRMSLEIELEQLAIREDMRIPV-KGKATFMLLDLASLESVRSFTEAFKKEGLPLDVLVLNAGVMMDASLSLFLLGRRAESADGHEMHWAVNHLGHFLLANLLLPKLEKSKDG-RIIVLSSS 399
            +LACRSEK + +A   +        LA     R P  KGKA FM LDLAS  SVR+F  AF+  GLPL VLV NAGVM            R  +ADG+EM    N+LGHFLL  LLLP L+++  G RI+ +SSS
Sbjct:  116 ILACRSEKKALQARSEI--------LA-----RCPNGKGKAEFMPLDLASFASVRAFARAFEALGLPLHVLVNNAGVMQH---------ERLLTADGYEMTLQANYLGHFLLTQLLLPALKRTNGGARIVNISSS 228          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15399.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQM3_9STRA2.350e-2750.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G717_ECTSI1.130e-2244.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7F6_9PHAE2.390e-2245.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7M7NS27_STRPU6.110e-2142.65Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A3M6V5M5_POCDA2.410e-2045.11Uncharacterized protein (Fragment) n=3 Tax=Pocillo... [more]
UPI000C1C21061.190e-1941.67SDR family oxidoreductase n=1 Tax=Lentibacillus se... [more]
A0A7M7HR10_STRPU1.720e-1941.18Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A6P6JJJ0_CARAU7.300e-1953.47dehydrogenase/reductase SDR family member on chrom... [more]
A0A7M7PG22_STRPU8.770e-1944.27Uncharacterized protein n=2 Tax=Strongylocentrotus... [more]
A0A8J6C6S1_DIALT1.430e-1848.15Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15399contigP-wetherbeei_contig15399:194..1529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G717
Model size399
Max annot lvl2880.D7G717|-
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.85e-23
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota
Descriptionoxidation-reduction process
Cds size399
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186054.5576017-CDS-P-wetherbeei_contig15399:193..3281683186054.5576017-CDS-P-wetherbeei_contig15399:193..328Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15399 194..328 -
1683186054.5683024-CDS-P-wetherbeei_contig15399:842..10311683186054.5683024-CDS-P-wetherbeei_contig15399:842..1031Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15399 843..1031 -
1683186054.5777533-CDS-P-wetherbeei_contig15399:1454..15291683186054.5777533-CDS-P-wetherbeei_contig15399:1454..1529Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15399 1455..1529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15399.1.1prot_P-wetherbeei_contig15399.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15399 194..1529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15399.1.1

>prot_P-wetherbeei_contig15399.1.1 ID=prot_P-wetherbeei_contig15399.1.1|Name=mRNA_P-wetherbeei_contig15399.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=133bp
LLACRSEKASNEAMDRMSLEIELEQLAIREDMRIPVKGKATFMLLDLASL
ESVRSFTEAFKKEGLPLDVLVLNAGVMMDASLSLFLLGRRAESADGHEMH
WAVNHLGHFLLANLLLPKLEKSKDGRIIVLSSS
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mRNA from alignment at P-wetherbeei_contig15399:194..1529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15399.1.1 ID=mRNA_P-wetherbeei_contig15399.1.1|Name=mRNA_P-wetherbeei_contig15399.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1336bp|location=Sequence derived from alignment at P-wetherbeei_contig15399:194..1529- (Phaeothamnion wetherbeei SAG_119_79)
CTTTTAGCGTGCCGCTCGGAGAAGGCGTCAAACGAGGCGATGGACCGGAT GTCGCTCGAAATCGAGCTCGAACAGGTCAGTTTCCTTCTTTTCTCACAAG TTCATGGAATACTCTTTCTGAGTAGTGCTTTTCCGCCGGGGTCTTGCTCT TCCGTTTTCCTTTTTCTTTCTCAATTTGGTTCCTTGCTCTTTTGCGGCGG TGCCCTGCTGTCTCCAGACGCGCGTAACCCTGTTTGTTGTGGTTGTTCAC CTCGCCAAAAAAGGGACGGATGGGCACGGCAGAATTGTTTTTCTTTCATT TCGATGCATTTATGAAGTGCAATCAGGATATGTTGAGTCTGAGGATGGAA TCCGGCAAGTTTAAACGCGAATGCATCTCCTCTTGATCTTTCATAAATGC TTCTGTCCACCTACCAACGACTTTTCCATCTGTGGGCTTATATCGATATC GACTATCGATCGACCACTTATCGAATGGACTGCTGGATCCACCGGCAGCT GGCGATCCGGGAGGACATGCGCATCCCGGTGAAGGGCAAGGCGACCTTTA TGTTGCTGGATCTGGCGTCGCTCGAGTCGGTGCGCAGCTTCACAGAGGCC TTCAAGAAGGAGGGGCTGCCGCTCGACGTCCTTGTGCTCAACGCCGGCGT CATGATGGACGCGAGTCTCTCTCTCTTTCTCTTGGGAGTTTCTGTTTTCA AGTTCTGACTTTCCTCTGCACCTGCTGTTTTGTGTTGCACTTATCGTTTA ATTGTGCCGCACAAATAGCTTTAGGCTTACGTCGTGTCTTCATGGCGGGT TAAGCGGTTTGCTGGCTTTCCTCTGTATTTCCAAAGATAGGTTCCTTGCG GTTTCAATCTTTTGTCCCGCTTTGTCAGGTACCTGGTCAGGTGCCTGGGC TCTCATCTGCCTCACACCATCGAAGTTTGTCGAATTTGACACCGCACATG CTTTTCTGCTCCCGTCGCATCACGACTCTTATGATTCTGTTACGGCCACC CTTCTCCCCGCCGTCCTCCATGTTTCTTCCTCCCCTACTCCCCTCTTCAC TCCCCTTTTCTCTCCGTTACCTTTCCGAAAACGGTTTTCGTCCCTTCTCC CCTCGTTTCTTGCCCTTTCCTTTCCTTCCCTCTTCGGTTCGTTCCTTCTC TGTGCACCTTTTCCTCCTTTCCTCATACTTTCCCTGCATCTGCATCTGCA GCGGCGCGCGGAGAGCGCCGACGGGCACGAAATGCACTGGGCCGTCAACC ACCTCGGCCACTTCTTGCTAGCCAACCTGCTGCTGCCCAAGCTCGAAAAG TCCAAGGATGGCCGCATCATCGTTTTGTCATCCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15399:194..1529-

>mRNA_P-wetherbeei_contig15399.1.1 ID=mRNA_P-wetherbeei_contig15399.1.1|Name=mRNA_P-wetherbeei_contig15399.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig15399:194..1529- (Phaeothamnion wetherbeei SAG_119_79)
CTTTTAGCGTGCCGCTCGGAGAAGGCGTCAAACGAGGCGATGGACCGGAT
GTCGCTCGAAATCGAGCTCGAACAGCTGGCGATCCGGGAGGACATGCGCA
TCCCGGTGAAGGGCAAGGCGACCTTTATGTTGCTGGATCTGGCGTCGCTC
GAGTCGGTGCGCAGCTTCACAGAGGCCTTCAAGAAGGAGGGGCTGCCGCT
CGACGTCCTTGTGCTCAACGCCGGCGTCATGATGGACGCGAGTCTCTCTC
TCTTTCTCTTGGGACGGCGCGCGGAGAGCGCCGACGGGCACGAAATGCAC
TGGGCCGTCAACCACCTCGGCCACTTCTTGCTAGCCAACCTGCTGCTGCC
CAAGCTCGAAAAGTCCAAGGATGGCCGCATCATCGTTTTGTCATCCTCC
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