mRNA_P-wetherbeei_contig15397.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15397.1.1
Unique NamemRNA_P-wetherbeei_contig15397.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15397.1.1 vs. uniprot
Match: B5YNB8_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNB8_THAPS)

HSP 1 Score: 57.8 bits (138), Expect = 6.690e-7
Identity = 43/128 (33.59%), Postives = 70/128 (54.69%), Query Frame = 1 
Query:   70 MAYKGNSWLGFAAATSGAGKMNGADAVVGDPNAATPSIRRYTLGNHLPGSLQAGVYQRQ-LRNATV----STAGAYTVLEFRRPIAASGDDGVEIRSGDNTFLWAYGQPGASFT-ARHKERNAYTVNL 435
            M Y+G +WLG     S  G M G++AV+G   A    ++ YTLG     ++Q     +Q L+NA++    S +G+ T+++F + +   G+  +EI +G N FLWAY   G+  T   H  R+ + +NL
Sbjct:  364 MTYEGIAWLGLG--FSNDGSMIGSEAVIGAVGAEQVPLK-YTLGGKSSDAVQPMSDDKQTLKNASIEVVNSASGSKTIMKFTKLMKEIGE--IEILTGSNNFLWAY---GSDITLGYHTGRSPFALNL 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15397.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5YNB8_THAPS6.690e-733.59Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15397contigP-wetherbeei_contig15397:14..454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps7092
Model size441
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.1e-07
EggNOG OGs2D6ZR@1|root,2T3KX@2759|Eukaryota,2XEP5@2836|Bacillariophyta
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186054.4314132-CDS-P-wetherbeei_contig15397:13..4541683186054.4314132-CDS-P-wetherbeei_contig15397:13..454Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15397 14..454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15397.1.1prot_P-wetherbeei_contig15397.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15397 14..454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15397.1.1

>prot_P-wetherbeei_contig15397.1.1 ID=prot_P-wetherbeei_contig15397.1.1|Name=mRNA_P-wetherbeei_contig15397.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
LTQTTGLNIFLEVDVAAEELMVKMAYKGNSWLGFAAATSGAGKMNGADAV
VGDPNAATPSIRRYTLGNHLPGSLQAGVYQRQLRNATVSTAGAYTVLEFR
RPIAASGDDGVEIRSGDNTFLWAYGQPGASFTARHKERNAYTVNLSA
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mRNA from alignment at P-wetherbeei_contig15397:14..454+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15397.1.1 ID=mRNA_P-wetherbeei_contig15397.1.1|Name=mRNA_P-wetherbeei_contig15397.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig15397:14..454+ (Phaeothamnion wetherbeei SAG_119_79)
TTAACCCAGACGACGGGCCTCAACATATTCCTAGAGGTGGACGTGGCCGC
GGAGGAGCTCATGGTGAAGATGGCTTACAAGGGGAATTCGTGGCTGGGCT
TCGCCGCCGCCACCTCCGGCGCGGGGAAGATGAACGGCGCTGACGCCGTC
GTCGGTGACCCCAACGCCGCCACGCCCTCCATCCGCCGCTACACGCTCGG
GAACCACCTGCCGGGATCGCTCCAGGCGGGCGTCTACCAGCGGCAGCTGC
GGAACGCCACGGTTTCGACGGCTGGCGCCTACACGGTGCTGGAGTTCCGG
CGGCCGATCGCCGCGTCCGGCGACGACGGCGTAGAGATTCGGAGCGGCGA
CAACACATTCCTGTGGGCGTACGGTCAGCCCGGTGCGTCTTTCACGGCGC
GGCACAAGGAGCGGAATGCCTACACGGTAAACCTTTCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15397:14..454+

>mRNA_P-wetherbeei_contig15397.1.1 ID=mRNA_P-wetherbeei_contig15397.1.1|Name=mRNA_P-wetherbeei_contig15397.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig15397:14..454+ (Phaeothamnion wetherbeei SAG_119_79)
TTAACCCAGACGACGGGCCTCAACATATTCCTAGAGGTGGACGTGGCCGC
GGAGGAGCTCATGGTGAAGATGGCTTACAAGGGGAATTCGTGGCTGGGCT
TCGCCGCCGCCACCTCCGGCGCGGGGAAGATGAACGGCGCTGACGCCGTC
GTCGGTGACCCCAACGCCGCCACGCCCTCCATCCGCCGCTACACGCTCGG
GAACCACCTGCCGGGATCGCTCCAGGCGGGCGTCTACCAGCGGCAGCTGC
GGAACGCCACGGTTTCGACGGCTGGCGCCTACACGGTGCTGGAGTTCCGG
CGGCCGATCGCCGCGTCCGGCGACGACGGCGTAGAGATTCGGAGCGGCGA
CAACACATTCCTGTGGGCGTACGGTCAGCCCGGTGCGTCTTTCACGGCGC
GGCACAAGGAGCGGAATGCCTACACGGTAAACCTTTCGGCC
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