mRNA_P-wetherbeei_contig15388.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig15388.1.1 vs. uniprot
Match: UPI001AD78FB1 (DrmE family protein n=1 Tax=Bradyrhizobium neotropicale TaxID=1497615 RepID=UPI001AD78FB1) HSP 1 Score: 206 bits (523), Expect = 3.890e-54 Identity = 155/540 (28.70%), Postives = 241/540 (44.63%), Query Frame = 1
Query: 1 TCGNSSLLRNRVVLLGFASDFEAALASMHLTLSEGGGR---PLILNDFVWGAVTEAGHTIVSHPRGGLGEPLVAVTRDPLLLTSLNDKNAPGCRQRLLVSSRIELVLANFEAIQRFAESNRTLLVAGAAQRENARKLRDFGWTVWEPTGNDLPMARADQVPQTVRGLAESERALALD--LRVGNAPQMRIKDPIVSGLFRCFSQVGSLVPSDDGMKEPLLASFADALNDVFYSLASWLRVPKSTS-SDWHVNGRLLLDRSRALLVQVAGSAAAS------ALDRFLEAVDEYQSLYPAGTITMKGRELLRIVDIAGSNESLKHRFVCSSQRTRDESTAFFASEGRKVACCTVQQMRTEDDVYRVVPMSIFNRQKFARLLDPWPANQLMLVGYDFELDIYQRRLEGRSRARAGLTLSRQKSSAISGLPETFFRPQSTHSSPMPAAPAIDTSSNGKFGELEIDGLDRLVK------NRRPTPASSLANSTTPASIVNFAKNSWAALSPEHVVLVIGSDAAREALIQPRRAAELTDGSRLVMR 1566
T GN+ L RNRVVLLG + FE L HL+ + G P + F WG + E+G ++ P G GEPLVAV RDPL ++ G RQRLL+SS + +VL + + ++R AE N LL+A A +R++ LR GW VWEP +L + V GL R L + R+ P + + + ++ + +P +D + L+A + F+ A WL P + S++H L+ A + + AA+ AL R L++ D T KG LLR++ + + S R + F A R+V C + + D R + + R+ F ++LDPWPA LML+GY FE IY+ R+E R+R R L S + + ++ P ++ T +L G +R+V+ RRP + A F +SW A + +H L++ + A +A ++ +L G RL+MR
Sbjct: 169 TFGNTGLFRNRVVLLGARASFERFLERTHLSPTVGSTVLPCPTLSEHFCWGFLHESGPAVILAPEGAAGEPLVAVNRDPL---NVRKGMMEGGRQRLLLSSDVSVVLRSIDLVERIAEKNALLLLASARRRDDVLPLRQRGWAVWEPASRELETLLSSTPETGVAGLDACLRGLKAEHGSRISEMPCLSVA---LDAAYQRLDSISDAIP-EDALDNDLVAGVLERCRAAFFMAAGWLEFPDNHHLSEYHAVLDELVSPGAAFALATSRDAASEVEAFGLALGRVLQSGDPRAP-------TPKGESLLRLIPTGDGGLGFRQELLVGSASARLSAADFLARHARQVPCRASTEPGSGDVPRRAIVTNALGRETFRKILDPWPAESLMLLGYGFETAIYRSRIERRARLREALRASEEVRAIVADDPLL----------------SLGTEVGTPMRDLAERGFERIVRATEWASTRRPRIEVRSGDVQDSAVFCRFVGHSWGAFTGDHQCLLL-DEGAEKASVRRIEVPDLRVGHRLIMR 677
BLAST of mRNA_P-wetherbeei_contig15388.1.1 vs. uniprot
Match: UPI001FF818C4 (ATP-binding protein n=1 Tax=Bradyrhizobium sp. 197 TaxID=2782663 RepID=UPI001FF818C4) HSP 1 Score: 207 bits (527), Expect = 5.270e-54 Identity = 148/539 (27.46%), Postives = 255/539 (47.31%), Query Frame = 1
Query: 1 TCGNSSLLRNRVVLLGFASDFEAALASMHLTLSEGGG-RPLILNDFVWGAVTEAGHTIVSHPRGGLGEPLVAVTRDPLLLTSLNDKNAPGCRQRLLVSSRIELVLANFEAIQRFAESNRTLLVAGAAQRENARKLRDFGWTVWEPTGNDL--PMARADQVPQTVRGLAESERALALDLRVGNAPQMRIKDPIVSGLFRCFSQVGSLVPSDDGMKEPLLASFADALNDVFYSLASWLRVPKS------TSSDWHVNGRLLLDRSRALLVQVAGSAAASALDRFLEAVDEYQSLYPAGTITMKGRELLRIVDIAGSNESLKHRFVCSSQRTRDESTAFFASEGRKVACCTVQQMRTEDDVYRVVPMSIFNRQKFARLLDPWPANQLMLVGYDFELDIYQRRLEGRSRARAGLTLSRQKSSAISGLPETFFRPQSTHSSPMPAAPAIDTSSNGKFGELE--IDGLDRLVKNRRPTPAS---SLANSTTPASIVNFAKNSWAALSPEH--VVLVIGSDAAREALIQPRRAAELTDGSRLVMRE 1569
T GNS L +NR++L+G +F L + L + R + + F WG E G +P G G PLVA+ RD L + +++++ R+E VL N + R E R +L A +R +A LR GW VWEP +L P+ AD + G + + + + R A + +S + ++G ++ ++ + + + + + + ++F+S+A+WL VP S ++S H+ G + + + G A SA+ F +A++ + + G IT KG LL + A N +LK V S+++R+E+ AF A+ + C ++ D+ + SI R F + +DPWP+ +++L GYDFE+++Y+RRL R + L L+ ++++ LP T F SP PA A D + + + RL K+ P P S T A IV F SW ++ ++ V LV G R++ ++ ++L G R+++RE
Sbjct: 1059 TFGNSGLNKNRIILVGSQKEFGRVLDGLSLVSQDPNQVRKPLADKFAWGNFDENGQPFALYPEGSGGAPLVAIARDLAELERASLHADVEAGSQIVLTDRLEHVLKNLDLANRVGERQRLILFADGRKRADALNLRKNGWKVWEPQPWELLSPVEVADPTKTGLLGFDRIQHSASAERRPSLA-YLPKSARALSSAYELLGKLGEILGAESAVDDLRMQASMETVREIFFSVANWLSVPPSAQLAECSASLQHLRGE------QTYVARYLGPDAGSAVGAFADAIESFVTSPRRGGITPKGDALLELARNAALNPTLKQVLVTGSRQSREEADAFLATNNIDLQCKLATELTDGDEFLSAISFSILRRDMFEKFIDPWPSKEIVLAGYDFEVELYKRRLRARGSQKKRLELNPDVRTSLTSLPATSF------GSPTPATDA-DLLPDAILDQQSEPFEQFSRLGKSDAPRPIRIDVSSNEQTEDAHIVRFVGQSWMPMAVDYRPVCLVQGGSEGRKSGVEHIEISDLRPGMRIIVRE 1583
BLAST of mRNA_P-wetherbeei_contig15388.1.1 vs. uniprot
Match: UPI0019A66A25 (Uncharacterized protein n=2 Tax=Salinarimonas ramus TaxID=690164 RepID=UPI0019A66A25) HSP 1 Score: 192 bits (488), Expect = 3.260e-49 Identity = 154/529 (29.11%), Postives = 243/529 (45.94%), Query Frame = 1
Query: 10 NSSLLRNRVVLLGFASDFEAALASMHLTLSEGGGRPL-ILNDFVWGAVTEAGHTIVSHPRGGLGEPLVAVTRDPLLLTSLNDKNAPGCRQRLLVSSRIELVLANFEAIQRFAESNRTLLVAGAAQRENARKLRDFGWTVWEPT-----GNDLPMARADQVPQTVRGL--AESERALALDLRVGNAPQMRIKDPIVSGLFRCFSQVGSLVPSDDGMKEPLLASFADALNDVFYSLASWLRVPKSTSSDWHVNGRLLLDRSRALLVQVAGSAAASALDRFLEAVDEYQSLYPAGTITMKGRELLRIVDIAGSNES-LKHRFVCSSQRTRDESTAFFASEGRKVACCTVQQMRTEDDVYRVVPMSIFNRQKFARLLDPWPANQLMLVGYDFELDIYQRRLEGRSRARAGLTLSRQKSSAISGLPETFFRPQSTHSSPMPAAPAIDTSSNGKFGELEIDGLDRLVKNRRPTPASSLANSTTPASIVNFAKNSWAALSPEHVVLVIGSDAAREALIQPRRAAELTDGSRLVMRE 1569
NS L+R RV++ G +DF+ AL + + G I + F +G + G V+ P G G PLVA RD + D + PG L+++ RI+ VLA+ + R AE R +++ A +RE+ LR WTVWEPT G + P P T R L AE+ER A AP V + + ++G L+ ++ EP + A F++ SWL P + +L + G+ A +AL EAV ++S A ++ KGR LL + A +N S K FV +++ R+E+ F + G C + + D+ V+ S+ R F RL+DPWP ++ +GY +E+D Y+RRL R RA L + A++G+P+ FF + P+ A A + + + + + DR R P+ ++V F S ++ EH LV+G+ R A + R +LT GSR+V+R+
Sbjct: 231 NSGLVRTRVLVQGSRTDFQRALDGLKIRPLSGDPEAAPIASGFPFGGFGDDGVPRVTRPDGAAGRPLVATARDLSEMRRYCDGSEPG--SCLVLTDRIDGVLADLDLAGRIAERQRLVVLVDAKRREDLAPLRRQRWTVWEPTPSEILGRETPTFTTG-CPGTTRSLRAAEAERFRAPGYLTSAAPH-------VGEIDKMIERIGGLLDNECVEHEPWVEDVLAATRGAFFAAGSWLGPPTGARLEMIEADLRVLQTEAPRMRWHLGAEAGTALIDLAEAVVAFRSSIEAAGVSPKGRSLLELA--ANANGSGRKPVFVAGNRQNREEADVFLRANGLDQRCLAIPDLHGLDETASVIAFSVMQRDLFHRLVDPWPRGTVLFLGYAYEVDCYRRRLLRREELRARGRLDPTRRLALTGVPDEFFG----NDEPLAEA-ASPSEEDERLTKFDRVTRDRSSSKRVTLPSGRPGEELCDVTVVRFVGRSILPMTAEHTSLVLGAAKGR-ASVSSARVGDLTVGSRIVVRD 741
BLAST of mRNA_P-wetherbeei_contig15388.1.1 vs. uniprot
Match: A0A850E711_9BRAD (Uncharacterized protein n=1 Tax=Tardiphaga robiniae TaxID=943830 RepID=A0A850E711_9BRAD) HSP 1 Score: 191 bits (486), Expect = 1.210e-48 Identity = 152/538 (28.25%), Postives = 254/538 (47.21%), Query Frame = 1
Query: 1 TCGNSSLLRNRVVLLGFASDFEAALASMHLTLS---EGGGRPLILNDFVWGAVTEAGHTIVSHPRGGLGEPLVAVTRDPLLLTSLNDKNAPGCRQRLLVSSRIELVLANFEAIQRFAESNRTLLVAGAAQRENARKLRDFGWTVWEPTGNDL-PMAR--ADQVPQTVRGLAESERALALDLRVGNAPQMRIKDPIVSGLFRCFSQVGSLVPSDDGMKEPLLASFADALNDVFYSLASWLRVPKST-SSDWHVNGRLLLDRSRALLVQVAGSAAASALDRFLEAVDEYQSLYPAGTITMKGRELLRIVDIAGSNESLKHRFVCSSQRTRDESTAFFASEGRKVACCTVQQMRTEDDVYRVVPMSIFNRQKFARLLDPWPANQLMLVGYDFELDIYQRRLEGRSRARAGLTLSRQKSSAISGLPETFFR--PQSTHSSPMPAAPAIDTSSNGKFGELEIDGLDRLVKNRRPTPASSLA----NSTTPASIVNFAKNSWAALSPEHVVLVI--GSDAAREALIQPRRAAELTDGSRLVMRE 1569
T GN+ L RNRVVL+G ++FE LA L S + + DF WG E G V P G G PLVA+ R+ L + + +++++ R+ELVL N + R E R ++ A A +R +A +LR GW VWEP +L P AR A+ V G+ S + + R N + P ++ FR + ++ + + + + +P + S + + +F+ A+WL +PK +++++ R L D + + + A A SAL F +A++ + S A IT KG LL++ +LK V S+++R+E+ AF + G + C ++ + R S+ R F + +DPWP+ ++L GY+FE++IY++RL R + L ++ ++ LP F P T S M AP D FG + N T A + T + IV F SW ++ ++ L I + R++ ++ A+L G R+++RE
Sbjct: 1069 TFGNTGLYRNRVVLVGSRAEFERMLARTTLAPSSRAQAVPTSALAEDFAWGTFDENGRPFVLSPEGASGCPLVAIARNLSELEKASLDPSVEAGSQIILTDRLELVLNNLDFAGRLGERQRLIVFADAKRRSDAVQLRKQGWKVWEPRSWELLPAARTFAEPAKTDVPGVDVSLHSAFAEQRP-NIGYLEKSAPHLAEAFRRWKEIDAHLNEESCVDDPTMQSALEQVRGLFFDAATWLSIPKGDRAAEYYAAVRHLRD-AETYVGRYANREAVSALRSFTDAIERFASPSSATGITPKGDALLQLAKNIVQYPALKQVLVTGSRQSREEADAFLGTNGIDLQCKIASELTDASESPRA--FSLLRRDMFDKFVDPWPSKSILLTGYEFEIEIYKKRLIWRESQKRRLEINPSLREDLTALPTAAFGVPPAETSSLRMADAPPADPDP-ASFGSPDS------WPNAHGTRAIDITVDGDEETEQSHIVRFVGRSWMPMAADYRPLCIMQAGNEGRKSGVEHIDLADLRPGMRIIVRE 1595 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15388.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig15388.1.1 >prot_P-wetherbeei_contig15388.1.1 ID=prot_P-wetherbeei_contig15388.1.1|Name=mRNA_P-wetherbeei_contig15388.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=523bp TCGNSSLLRNRVVLLGFASDFEAALASMHLTLSEGGGRPLILNDFVWGAVback to top mRNA from alignment at P-wetherbeei_contig15388:5..1573- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig15388.1.1 ID=mRNA_P-wetherbeei_contig15388.1.1|Name=mRNA_P-wetherbeei_contig15388.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1569bp|location=Sequence derived from alignment at P-wetherbeei_contig15388:5..1573- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig15388:5..1573- >mRNA_P-wetherbeei_contig15388.1.1 ID=mRNA_P-wetherbeei_contig15388.1.1|Name=mRNA_P-wetherbeei_contig15388.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1569bp|location=Sequence derived from alignment at P-wetherbeei_contig15388:5..1573- (Phaeothamnion wetherbeei SAG_119_79)back to top |