mRNA_P-wetherbeei_contig15385.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15385.2.1
Unique NamemRNA_P-wetherbeei_contig15385.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15385.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15385contigP-wetherbeei_contig15385:906..1348 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size164
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186054.1024213-UTR-P-wetherbeei_contig15385:905..9301683186054.1024213-UTR-P-wetherbeei_contig15385:905..930Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15385 906..930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186054.1126585-CDS-P-wetherbeei_contig15385:930..9811683186054.1126585-CDS-P-wetherbeei_contig15385:930..981Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15385 931..981 -
1683186054.124296-CDS-P-wetherbeei_contig15385:1261..13481683186054.124296-CDS-P-wetherbeei_contig15385:1261..1348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15385 1262..1348 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15385.2.1prot_P-wetherbeei_contig15385.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15385 931..1348 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15385.2.1

>prot_P-wetherbeei_contig15385.2.1 ID=prot_P-wetherbeei_contig15385.2.1|Name=mRNA_P-wetherbeei_contig15385.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=46bp
FQHRADLHHHTKAHLVFTGPLYLLAELAEIRRHTRAARTETTRAQ*
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mRNA from alignment at P-wetherbeei_contig15385:906..1348-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15385.2.1 ID=mRNA_P-wetherbeei_contig15385.2.1|Name=mRNA_P-wetherbeei_contig15385.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=443bp|location=Sequence derived from alignment at P-wetherbeei_contig15385:906..1348- (Phaeothamnion wetherbeei SAG_119_79)
TTCCAGCACAGAGCCGACCTTCATCACCACACAAAAGCACACCTGGTATT
CACTGGTCCCCTTTATTTGCTTGCAGAGCTCGCTGAGGTGCGAGAACTCT
ACAGACTTATGGGGCCGGGCCGTGTTTGTCTGCCGGGAGGAAAGACTGCG
CTGCGCGCTGAACCTGCGCGCAGCAAGATGGAGCCAACCTTCTCACACTA
ATCGCTTCCGTTTTCTTCGAACCTCTGCTTCGCTCTGCACAGCCTCGCTT
TCTTCGATTCTTCGAACCTCTCTTTCGCGTCGTGCATACAAAATGTATAT
TTGTGTGTGTTGGCCTGTGTTTCTTCCATCCATTCTTCGCTTCCCGCCCT
ACACTGTTCTCTTTCAGATAAGGCGGCACACGAGAGCTGCGAGGACGGAA
ACTACGAGAGCTCAGTGAAAGACGATTGTCGGCTGCGGGCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15385:906..1348-

>mRNA_P-wetherbeei_contig15385.2.1 ID=mRNA_P-wetherbeei_contig15385.2.1|Name=mRNA_P-wetherbeei_contig15385.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig15385:906..1348- (Phaeothamnion wetherbeei SAG_119_79)
TTCCAGCACAGAGCCGACCTTCATCACCACACAAAAGCACACCTGGTATT
CACTGGTCCCCTTTATTTGCTTGCAGAGCTCGCTGAGATAAGGCGGCACA
CGAGAGCTGCGAGGACGGAAACTACGAGAGCTCAGTGA
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