mRNA_P-wetherbeei_contig15383.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15383.1.1
Unique NamemRNA_P-wetherbeei_contig15383.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15383.1.1 vs. uniprot
Match: A0A482T3C7_9ARCH (DNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T3C7_9ARCH)

HSP 1 Score: 184 bits (468), Expect = 9.460e-50
Identity = 100/168 (59.52%), Postives = 126/168 (75.00%), Query Frame = 1
Query:    1 VANKLGTWSKIGRLRRTRPPRAFGDVGKESFHTAIAAGRILCDTYKSAQEFLRAETTYSLSHLAARQLGAQRADVDPADVPRLFAAGAGQIVQLAQLTAFDAGLVQRLMFKLQVIPLTKQLTNITGNLWSSTARGLRADRIDHLLLHEFHALKFVTPEKRAFKDKEKD 504
            VANKL  WS IGRLR+++ P++  D         + AGRILCDTYK+A+EFLR ETTYSL++LA+ QL  +RA+VDP DVPR F+  A  I+ LA  T  DA LVQ LMFKLQV+PLTKQLT I+GNLWS T +G RA+RI++LLLHEFH+LK++ PE R F+D  K+
Sbjct:  540 VANKLPNWSLIGRLRKSKEPKSINDRD-------VTAGRILCDTYKAAKEFLR-ETTYSLTYLASSQLKKERAEVDPIDVPRYFST-ANDIIGLAWHTYRDAWLVQGLMFKLQVVPLTKQLTCISGNLWSRTIKGARAERIEYLLLHEFHSLKYILPE-RKFQDNSKN 697          
BLAST of mRNA_P-wetherbeei_contig15383.1.1 vs. uniprot
Match: A0A4D9CVK1_9STRA (DNA polymerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVK1_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.010e-43
Identity = 92/161 (57.14%), Postives = 115/161 (71.43%), Query Frame = 1
Query:   10 KLGTWSKIGRLRRTRPPRAFGDVGKESFHTAIAAGRILCDTYKSAQEFLRAETTYSLSHLAARQLGAQ--RADVDPADVPRLFAAGAGQIVQLAQLTAFDAGLVQRLMFKLQVIPLTKQLTNITGNLWSSTARGLRADRIDHLLLHEFHALKFVTPEKRAF 486
            K+  W KIGRLRR + P   G + ++     + AGR++ DTY +A+E LR ETTYSL HLA  QL     RA +DP  VP  F + A  IV LAQ TAFDA LVQRL  +LQ++PLTKQLTNI+GNLW+ T +G RA+RI++LLLHEFH LK+VTPE+RAF
Sbjct:  733 KVSVWHKIGRLRRAKFPNPKG-LARDINLFGLTAGRLMADTYLTAREHLR-ETTYSLGHLATTQLRLPHPRAQIDPLQVPSFFGS-AKLIVNLAQHTAFDAQLVQRLCLRLQLVPLTKQLTNISGNLWARTIKGNRAERIEYLLLHEFHNLKYVTPERRAF 890          
BLAST of mRNA_P-wetherbeei_contig15383.1.1 vs. uniprot
Match: A0A7S1YR22_9STRA (DNA-directed DNA polymerase (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YR22_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.270e-43
Identity = 88/169 (52.07%), Postives = 112/169 (66.27%), Query Frame = 1
Query:    1 VANKLGTWSKIGRLRRTRPP-----RAFGDVGKESFHTA-IAAGRILCDTYKSAQEFLRAETTYSLSHLAARQLGAQRADVDPADVPRLFAAGAGQIVQLAQLTAFDAGLVQRLMFKLQVIPLTKQLTNITGNLWSSTARGLRADRIDHLLLHEFHALKFVTPEKRAFK 489
            V  K+  WSK+GR RRT  P      +F   G E++      +GR++CDTY S+QE LR ETTYSL +LA  QL   R +++  DVP+ F      IV LA+ T FDA LVQRLMFKLQV+PLTKQLT I GNLW  T +G RA+R ++LLLHEFH  K++ PE+R +K
Sbjct:   94 VETKVMIWSKLGRRRRTALPSISYLNSFKKGGGENYALVETLSGRLVCDTYVSSQELLR-ETTYSLQNLAMTQLKTNRVEIEQVDVPQWFDKSVN-IVNLAKHTLFDAQLVQRLMFKLQVLPLTKQLTCIAGNLWMRTLKGQRAERNEYLLLHEFHGRKYIVPERRNYK 260          
BLAST of mRNA_P-wetherbeei_contig15383.1.1 vs. uniprot
Match: A0A7S2L169_9STRA (DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L169_9STRA)

HSP 1 Score: 165 bits (418), Expect = 5.050e-43
Identity = 96/170 (56.47%), Postives = 116/170 (68.24%), Query Frame = 1
Query:    1 VANKLGTWSKIGRLRRTRPPRA--FGDVGKESFHTAIAAGRILCDTYKSAQEFLRAETTYSLSHLAARQLGAQRADVDPADVPRLFAAGAGQIVQLAQLTAFDAGLVQRLMFKLQVIPLTKQLTNITGNLWSSTARGLRADRIDHLLLHEFHALKFVTPEKRAFKDKEKD 504
            V  K+G WSKIGR R+ R P A  FG+ GKE        GRILCDTY SA+EFLR ETTYSL++LA+ QL   R +++   VP     G    V+LAQ T  DA LVQ LMFKLQV+PLTKQLTNI GNLW  T +G RA+R ++LLLHEFH LK++ PEKR  K + +D
Sbjct:  729 VELKVGMWSKIGRRRQMRLPPASQFGN-GKEWAIANALDGRILCDTYLSAKEFLR-ETTYSLTNLASTQLKFAREEIEQESVPEFCKTGTN-FVKLAQHTLNDAQLVQNLMFKLQVLPLTKQLTNIAGNLWGRTMKGNRAERNEYLLLHEFHQLKYLVPEKRTAKQRLED 895          
BLAST of mRNA_P-wetherbeei_contig15383.1.1 vs. uniprot
Match: B8LEG9_THAPS (DNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEG9_THAPS)

HSP 1 Score: 162 bits (411), Expect = 4.160e-42
Identity = 93/170 (54.71%), Postives = 116/170 (68.24%), Query Frame = 1
Query:    1 VANKLGTWSKIGRLRRTRPPRA--FGDVGKESFHTAIAAGRILCDTYKSAQEFLRAETTYSLSHLAARQLGAQRADVDPADVPRLFAAGAGQIVQLAQLTAFDAGLVQRLMFKLQVIPLTKQLTNITGNLWSSTARGLRADRIDHLLLHEFHALKFVTPEKRAFKDKEKD 504
            V  K+  WSKIGR R+ + P A  FG+ GKE        GRILCDT  SA+E LR ETTYSL++L   QL  QR +++P DVP+    G    V LAQ T  DA LVQRLMFKLQ++PLTKQLTNI GNLW+ T +G RA+R ++LLLHEFH LK++ PEKR  K + ++
Sbjct:  321 VELKVSMWSKIGRRRQMKLPNATQFGN-GKEWAIANALDGRILCDTCISAKELLR-ETTYSLTNLTLTQLKMQRVEIEPVDVPKWCRDGK-HFVSLAQHTLNDAQLVQRLMFKLQILPLTKQLTNIAGNLWARTMKGNRAERNEYLLLHEFHNLKYLVPEKRTAKQRSEE 487          
BLAST of mRNA_P-wetherbeei_contig15383.1.1 vs. uniprot
Match: A0A7S3P4V5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P4V5_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.060e-41
Identity = 83/161 (51.55%), Postives = 110/161 (68.32%), Query Frame = 1
Query:    1 VANKLGTWSKIGRLRRTRPPRAFGDVGKESFHTAIAAGRILCDTYKSAQEFLRAETTYSLSHLAARQLGAQRADVDPADVPRLFAAGAGQIVQLAQLTAFDAGLVQRLMFKLQVIPLTKQLTNITGNLWSSTARGLRADRIDHLLLHEFHALKFVTPEKRA 483
             A+KL +WS++GR R+T  P+  G +   +   A+  GR+LCDTY SA+E LR ETTYSL+ LAA QL   R +++  D+P  FA   G +  +   T  DA LVQ+L FKLQ +PLTKQLTNI GNLWS T +  RA+R ++LLLHEFH LK++ PEK+A
Sbjct:   66 AAHKLKSWSQMGRRRQTALPK--GPIKDWAIAQAMT-GRLLCDTYLSAKELLR-ETTYSLTALAASQLQTARPEIESVDLPLYFATAKG-VTDVCHSTLLDAQLVQKLAFKLQTLPLTKQLTNIAGNLWSHTLKSNRAERTEYLLLHEFHRLKYLPPEKKA 221          
BLAST of mRNA_P-wetherbeei_contig15383.1.1 vs. uniprot
Match: A0A7S1UP17_9STRA (DNA polymerase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UP17_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.580e-41
Identity = 86/168 (51.19%), Postives = 117/168 (69.64%), Query Frame = 1
Query:    1 VANKLGTWSKIGRLRRTR-PPRAFGDVGKESFHTAIAAGRILCDTYKSAQEFLRAETTYSLSHLAARQLGAQRADVDPADVPRLFAAGAGQIVQLAQLTAFDAGLVQRLMFKLQVIPLTKQLTNITGNLWSSTARGLRADRIDHLLLHEFHALKFVTPEKRAFKDKEK 501
            V  K+  WSK+GR R+T+ PP +    GK+        GR+LCDTY SA++ LR ETTYSL++LAA QL   R D++P D+P+ F      IV LA+ T  DA LVQRL+FKLQ++PLTKQLT + GNLW  T +G RA+R ++LLLHEFH+LK++ PEK+   +K++
Sbjct:  341 VELKVPLWSKVGRRRKTKLPPLSHFASGKDWAIADAIQGRLLCDTYLSAKDLLR-ETTYSLTNLAATQLKTLRQDIEPQDIPQWFHTSK-DIVHLARHTLHDAELVQRLLFKLQILPLTKQLTCVAGNLWGRTLKGNRAERNEYLLLHEFHSLKYLPPEKKRKGEKQE 506          
BLAST of mRNA_P-wetherbeei_contig15383.1.1 vs. uniprot
Match: A0A7S4IIV6_9STRA (DNA polymerase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IIV6_9STRA)

HSP 1 Score: 160 bits (406), Expect = 2.030e-41
Identity = 91/164 (55.49%), Postives = 112/164 (68.29%), Query Frame = 1
Query:   10 KLGTWSKIGRLRRTRPPRA--FGDVGKESFHTAIAAGRILCDTYKSAQEFLRAETTYSLSHLAARQLGAQRADVDPADVPRLFAAGAGQIVQLAQLTAFDAGLVQRLMFKLQVIPLTKQLTNITGNLWSSTARGLRADRIDHLLLHEFHALKFVTPEKRAFKDK 495
            K+  WSKIGRLR T  P+   F   GK+        GRIL DTY SA+E LR ETTYSL +LA  QL   + D+DP DVPR F + +  I+ LA+ T  DA LVQ+LMFKLQV+PLTKQLT I GNLWS T +G RA+R ++LLLHEFH LK++ PEK   ++K
Sbjct:  604 KVKLWSKIGRLRNTTLPKPSQFHGNGKDWAVGNALRGRILADTYLSAKELLR-ETTYSLKNLAKSQLKTFKEDIDPVDVPRWFNSSS-DIISLAKHTLRDAELVQKLMFKLQVLPLTKQLTCIAGNLWSHTVKGNRAERNEYLLLHEFHQLKYIVPEKERSRNK 765          
BLAST of mRNA_P-wetherbeei_contig15383.1.1 vs. uniprot
Match: A0A7S4EF44_9STRA (DNA polymerase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EF44_9STRA)

HSP 1 Score: 159 bits (403), Expect = 5.170e-41
Identity = 88/165 (53.33%), Postives = 111/165 (67.27%), Query Frame = 1
Query:    1 VANKLGTWSKIGRLRRTR-PPRAFGDVGKESFHTAIAAGRILCDTYKSAQEFLRAETTYSLSHLAARQLGAQRADVDPADVPRLFAAGAGQIVQLAQLTAFDAGLVQRLMFKLQVIPLTKQLTNITGNLWSSTARGLRADRIDHLLLHEFHALKFVTPEKRAFKD 492
            + +K+  WSK GR R+T  P + +   GK+       +GR+LCDTY SAQE L  ETTYSL++LA  QL   R +++P D P+ F      IV LA+ T  DA LVQRLMFKLQ++PL+KQLTNI GNLWS T +  RA R ++LLLHEFH LKFV PEKR  K+
Sbjct:  819 IEHKVRMWSKFGRQRQTDLPSKTYFSNGKDWAIARAISGRLLCDTYLSAQEHLN-ETTYSLTNLAKTQLKTDRREIEPMDTPQYFHKSE-TIVALARHTLNDAQLVQRLMFKLQILPLSKQLTNIAGNLWSQTLKSNRAGRTEYLLLHEFHRLKFVVPEKRQGKN 981          
BLAST of mRNA_P-wetherbeei_contig15383.1.1 vs. uniprot
Match: A0A448Z9Q9_9STRA (DNA-directed DNA polymerase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9Q9_9STRA)

HSP 1 Score: 159 bits (403), Expect = 5.300e-41
Identity = 89/169 (52.66%), Postives = 114/169 (67.46%), Query Frame = 1
Query:    1 VANKLGTWSKIGRLRRTR-PPRAFGDVGKESFHTAIAAGRILCDTYKSAQEFLRAETTYSLSHLAARQLGAQRADVDPADVPRLFAAGAGQIVQLAQLTAFDAGLVQRLMFKLQVIPLTKQLTNITGNLWSSTARGLRADRIDHLLLHEFHALKFVTPEKRAFKDKEKD 504
            V +K+  WSK GR R+T  P + +   GK+   +   +GR+LCDTY SAQE L  ETTYSL++LA  QL   R +++P D P+ F      IV LA+ T  DA LVQRLMFKLQ++PLTKQLTNI GNLWS T +  RA R ++LLLHEFH LK++ PEK   K K++D
Sbjct: 1267 VEHKVRMWSKFGRQRKTELPSKTYFSSGKDWAISEAISGRLLCDTYLSAQEHLN-ETTYSLTNLAKTQLRTDRQEIEPMDTPQYFHKSE-TIVALARHTLNDAQLVQRLMFKLQILPLTKQLTNIAGNLWSQTMKSNRAGRTEYLLLHEFHRLKYLVPEKH--KGKKED 1431          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15383.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A482T3C7_9ARCH9.460e-5059.52DNA polymerase n=1 Tax=archaeon TaxID=1906665 RepI... [more]
A0A4D9CVK1_9STRA2.010e-4357.14DNA polymerase n=1 Tax=Nannochloropsis salina CCMP... [more]
A0A7S1YR22_9STRA3.270e-4352.07DNA-directed DNA polymerase (Fragment) n=1 Tax=Dit... [more]
A0A7S2L169_9STRA5.050e-4356.47DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=2... [more]
B8LEG9_THAPS4.160e-4254.71DNA polymerase (Fragment) n=1 Tax=Thalassiosira ps... [more]
A0A7S3P4V5_9STRA1.060e-4151.55Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S1UP17_9STRA1.580e-4151.19DNA polymerase (Fragment) n=1 Tax=Grammatophora oc... [more]
A0A7S4IIV6_9STRA2.030e-4155.49DNA polymerase n=1 Tax=Odontella aurita TaxID=2655... [more]
A0A7S4EF44_9STRA5.170e-4153.33DNA polymerase n=1 Tax=Pseudo-nitzschia australis ... [more]
A0A448Z9Q9_9STRA5.300e-4152.66DNA-directed DNA polymerase n=1 Tax=Pseudo-nitzsch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15383contigP-wetherbeei_contig15383:74..1570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thapsdraft439
PFAMsDNA_pol_B,DNA_pol_B_exo1,zf-DNA_Pol
Model size732
Max annot lvl2836|Bacillariophyta
KEGG rclassRC02795
KEGG koko:K02320
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
Hectar predicted targeting categorymitochondrion
Exons3
Evalue6.82e-43
EggNOG OGsCOG0417@1|root,KOG0970@2759|Eukaryota,2XBAP@2836|Bacillariophyta
EC2.7.7.7
DescriptionDNA Polymerase alpha zinc finger
Cds size729
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186054.0487254-CDS-P-wetherbeei_contig15383:75..1871683186054.0487254-CDS-P-wetherbeei_contig15383:75..187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15383 76..187 -
1683186054.063289-CDS-P-wetherbeei_contig15383:591..8691683186054.063289-CDS-P-wetherbeei_contig15383:591..869Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15383 592..869 -
1683186054.073274-CDS-P-wetherbeei_contig15383:1231..15701683186054.073274-CDS-P-wetherbeei_contig15383:1231..1570Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15383 1232..1570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15383.1.1prot_P-wetherbeei_contig15383.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15383 76..1570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15383.1.1

>prot_P-wetherbeei_contig15383.1.1 ID=prot_P-wetherbeei_contig15383.1.1|Name=mRNA_P-wetherbeei_contig15383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=243bp
VANKLGTWSKIGRLRRTRPPRAFGDVGKESFHTAIAAGRILCDTYKSAQE
FLRAETTYSLSHLAARQLGAQRADVDPADVPRLFAAGAGQIVQLAQLTAF
DAGLVQRLMFKLQVIPLTKQLTNITGNLWSSTARGLRADRIDHLLLHEFH
ALKFVTPEKRAFKDKEKDGGAGSKGKGGSSKKKGGGGGGGGGGGGGGSGG
GGGDGDRHTRAGWFWSPRRASMTRSSCCLTSRHSTRPLSRSTT
back to top

mRNA from alignment at P-wetherbeei_contig15383:74..1570-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15383.1.1 ID=mRNA_P-wetherbeei_contig15383.1.1|Name=mRNA_P-wetherbeei_contig15383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1497bp|location=Sequence derived from alignment at P-wetherbeei_contig15383:74..1570- (Phaeothamnion wetherbeei SAG_119_79)
GTGGCCAACAAGCTGGGCACGTGGAGCAAGATCGGTCGCCTCCGCCGCAC CCGCCCGCCGCGGGCCTTCGGCGACGTTGGCAAGGAGTCATTCCACACCG CCATCGCCGCCGGCCGCATCCTCTGCGACACGTACAAGTCAGCCCAGGAG TTTCTGCGCGCCGAGACAACCTACTCGCTCTCGCACCTGGCGGCTCGGCA GCTGGGTGCGCAGCGGGCGGACGTGGACCCAGCCGACGTGCCGCGGCTAT TCGCGGCGGGCGCCGGGCAGATTGTGCAGCTGGCGCAGCTGACTGCATTC GACGCCGGCCTCGTGCAGCGCCTCATGTTCAAGCTGCAGGTGCGGGACAC GCTGTCGCTCTCTTTTAGTTAATTTCGCTTGGCATTGGTTTGGCTTTCGT TTCGTGTTTGCAGGCGGAATGATTGGAGTGAGAGGGGAGCGAGGGGATGA GAAGCGAATACGCAACCACCGCCGGCGCCGCTCTCGCCGCCATTGCCGCT GCAGTGGCTGCCGCTGCACCATCGTTGTGCGGCGACCATCGCTGCCGCTG TTTTCACTGCTTACCCGGTGCTGTCTGTCTCACACGTGGTTGCGGCCGCT CACCTGACGCCGCCCGCAATACCTGACGCCGCTTCCTCCGCGCTTCCACC TTTCCGTCTGCCGCCGCTGCCGCCGCCTGTTATCGCTGCCGTCACGCGCA GGTGATCCCGCTGACGAAGCAGCTGACCAACATCACGGGCAACCTGTGGT CGAGCACAGCCCGCGGTCTTCGGGCCGACCGCATCGACCATTTGCTACTG CACGAATTCCATGCCCTCAAGTTTGTCACGCCCGAGAAGCGCGCCTTCAA GGATAAGGAGAAGGACGGCGGCGCCGGCAGCAAGGGCAAGGGTGGCAGCT CCAAGAAGAAGGGCGGCGGAGGCGGAGGCGGCGGGGGCGGCGGGGGCGGG GGCAGCGGTGGGGGAGGTGGCGACGGGGAGTTTGAGGAGGGCGGCGGCGG GGGTGGTGGAGGCGGAGGCAGCGGTGGCAAGCGCAACCGCAAGGTGAGGG GACCACGGAGGTTCAGTGCATGGTGAGAAGGGTTGATTACATCTTGTAGC GGCCATTTTTGGTCACTCCTCTGCCGCACCAATGCTGCGCACTTTGAACG GCAGGTCTGCTTCTTTTAGGGTTGCAAGCTGTTGTTTCTTCCTTTATTGG CCAAATCCCAAAGCTGCTCACAGGTAACTCACTGTCCAATCATCTCTTTC TACCACGACCCGTTCCCTCTTGCTGGTGTTGATGGCAAAAATGGCAACGG CGTGAAACACCGATACCAACAAACATCGACGTTTCCCACCGTTGCGGTGC CGGTCCGTCACCGTCGCCTGCCACTACAAGCAGCCGGCATACTCGGGCGG GCTGGTTCTGGAGCCCAAGAAGGGCCTCTATGACTCGTTCATCCTGCTGC TTGACTTCGCGTCACTCTACCCGTCCCTTATCCAGGAGTACAACCTC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15383:74..1570-

>mRNA_P-wetherbeei_contig15383.1.1 ID=mRNA_P-wetherbeei_contig15383.1.1|Name=mRNA_P-wetherbeei_contig15383.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=729bp|location=Sequence derived from alignment at P-wetherbeei_contig15383:74..1570- (Phaeothamnion wetherbeei SAG_119_79)
GTGGCCAACAAGCTGGGCACGTGGAGCAAGATCGGTCGCCTCCGCCGCAC
CCGCCCGCCGCGGGCCTTCGGCGACGTTGGCAAGGAGTCATTCCACACCG
CCATCGCCGCCGGCCGCATCCTCTGCGACACGTACAAGTCAGCCCAGGAG
TTTCTGCGCGCCGAGACAACCTACTCGCTCTCGCACCTGGCGGCTCGGCA
GCTGGGTGCGCAGCGGGCGGACGTGGACCCAGCCGACGTGCCGCGGCTAT
TCGCGGCGGGCGCCGGGCAGATTGTGCAGCTGGCGCAGCTGACTGCATTC
GACGCCGGCCTCGTGCAGCGCCTCATGTTCAAGCTGCAGGTGATCCCGCT
GACGAAGCAGCTGACCAACATCACGGGCAACCTGTGGTCGAGCACAGCCC
GCGGTCTTCGGGCCGACCGCATCGACCATTTGCTACTGCACGAATTCCAT
GCCCTCAAGTTTGTCACGCCCGAGAAGCGCGCCTTCAAGGATAAGGAGAA
GGACGGCGGCGCCGGCAGCAAGGGCAAGGGTGGCAGCTCCAAGAAGAAGG
GCGGCGGAGGCGGAGGCGGCGGGGGCGGCGGGGGCGGGGGCAGCGGTGGG
GGAGGTGGCGACGGGGACCGGCATACTCGGGCGGGCTGGTTCTGGAGCCC
AAGAAGGGCCTCTATGACTCGTTCATCCTGCTGCTTGACTTCGCGTCACT
CTACCCGTCCCTTATCCAGGAGTACAACC
back to top