mRNA_P-wetherbeei_contig1538.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1538.1.3
Unique NamemRNA_P-wetherbeei_contig1538.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1538.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1538contigP-wetherbeei_contig1538:2..4614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1836
Hectar predicted targeting categoryother localisation
Exons9
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferases
Ec32 orthologEc-26_001980.1
Cds size1056
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1538.1.3prot_P-wetherbeei_contig1538.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1538 33..3865 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186053.8236415-UTR-P-wetherbeei_contig1538:1..321683186053.8236415-UTR-P-wetherbeei_contig1538:1..32Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1538 2..32 +
1683186053.9242604-UTR-P-wetherbeei_contig1538:3865..46141683186053.9242604-UTR-P-wetherbeei_contig1538:3865..4614Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1538 3866..4614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186053.8340893-CDS-P-wetherbeei_contig1538:32..411683186053.8340893-CDS-P-wetherbeei_contig1538:32..41Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1538 33..41 +
1683186053.8440423-CDS-P-wetherbeei_contig1538:248..3481683186053.8440423-CDS-P-wetherbeei_contig1538:248..348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1538 249..348 +
1683186053.8538141-CDS-P-wetherbeei_contig1538:517..5921683186053.8538141-CDS-P-wetherbeei_contig1538:517..592Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1538 518..592 +
1683186053.8632035-CDS-P-wetherbeei_contig1538:823..9561683186053.8632035-CDS-P-wetherbeei_contig1538:823..956Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1538 824..956 +
1683186053.8724365-CDS-P-wetherbeei_contig1538:1278..13661683186053.8724365-CDS-P-wetherbeei_contig1538:1278..1366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1538 1279..1366 +
1683186053.8818765-CDS-P-wetherbeei_contig1538:1705..19021683186053.8818765-CDS-P-wetherbeei_contig1538:1705..1902Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1538 1706..1902 +
1683186053.894201-CDS-P-wetherbeei_contig1538:2418..25761683186053.894201-CDS-P-wetherbeei_contig1538:2418..2576Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1538 2419..2576 +
1683186053.904937-CDS-P-wetherbeei_contig1538:3258..33561683186053.904937-CDS-P-wetherbeei_contig1538:3258..3356Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1538 3259..3356 +
1683186053.914787-CDS-P-wetherbeei_contig1538:3667..38651683186053.914787-CDS-P-wetherbeei_contig1538:3667..3865Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1538 3668..3865 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1538.1.3

>prot_P-wetherbeei_contig1538.1.3 ID=prot_P-wetherbeei_contig1538.1.3|Name=mRNA_P-wetherbeei_contig1538.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=352bp
MYEFRTAKSIHAMRPPVAHVEEDERFDETGTAVALLGLGVMASQLKCEAA
VESLGVVGGWAGRVYLFTDKPQCFDVASMRLSSGTDLRLVDIDDGRDYSA
GFALPSLGATKGNRLRAKLLKSRIFKEITDKTIQQVLYMDCDIVVAQTGC
VRPMLSAAFGGWRDDEDIRFRVLSPGGVRRQFDHPERFRIHAGFFAARRD
RSWRALEAWEAELSTLKYAHDRLAFLAAKKRVREHAVATGDATDDFMRVG
TWKGEWERFADVRRELSCVVHVSHKRCFWQGRANIQTIIERLNLTVHAAH
GGAPYCESVWTYPFTLSWLPYKSCRKIETLLLPRPSSPVPAQPASPPLLL
D*
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mRNA from alignment at P-wetherbeei_contig1538:2..4614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1538.1.3 ID=mRNA_P-wetherbeei_contig1538.1.3|Name=mRNA_P-wetherbeei_contig1538.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4613bp|location=Sequence derived from alignment at P-wetherbeei_contig1538:2..4614+ (Phaeothamnion wetherbeei SAG_119_79)
GAACATCTTCAGCTGGCGAAAGTTCGAAGTCATGTACGAGGTCAGCTTGC
CGCCTGCCGTAGCGAGCAATAGCGGAGTTTCCGTGACCATTCGCTGGTCG
GCTTTGTCATGTTCAATCTACTTCATACTAGACTTCGCTGCTGTTCCCCC
GCATCCCCCCAAATCGCCCCGCACTCCTCCTGCGCTTCACTATGGATTTT
GCTCGCCGCTCTTACCACGCTGTGCCGCCGCGTACTGCATTTGGCAGTTC
CGCACGGCCAAGAGTATCCACGCCATGCGGCCTCCAGTTGCCCACGTCGA
AGAGGACGAGCGGTTCGATGAGACTGGGACGGCGGTGGCGCTCCTCGGTG
CGTGGATCCTAGTGGCGCCGTGGATGTCGGGGTTCCGAAGCTGGCGGTTC
TTTGTGCGCTATGATTGCTCGGCAACTTGGTCTTCCGTTACGGATATTGT
ACTCAACTAAGTAATCCACGCTCCGCCGCACCCTCGCTTCCTTCTTCAAT
TCCCTCGCTAAAACAGGGCTTGGAGTCATGGCGAGTCAGCTCAAGTGCGA
AGCCGCGGTCGAATCGCTCGGCGTCGTCGGCGGCTGGGCTGGTCAGTTTT
CCGCGACGGCGCTGCTTATGATGAAAAGGGCCCTCTTGGCGAGGGAGTTG
ACATTTTCGACATAATCGTTTTCTCCTTGGAATGCAGCACCCTCTCCCTC
GGGAAGCAAAACATATCAAAATTGTCCGTTGAAACCCTTCCTTACCCTTT
CCCACGTGTCCGTTCTCCCCCTTCTCTTCGCCTGTTCCCTTCATCTTCTT
TCCCTTCTTTGTACAAACCCAGGGCGCGTGTACCTGTTCACGGACAAGCC
GCAGTGCTTTGACGTGGCATCGATGCGCCTTTCCTCGGGTACGGACCTCC
GTCTCGTTGACATTGACGACGGCCGCGACTACTCCGCCGGCTTCGCGCTG
CCCAGGCAAGCTCAGTCACTTCAAGCGCCTGGCGGCAACCGTACCTCACT
TTTATAACGTTCACTCTCACTGCTTTCCAGCAGCTAGATTCAACGGATGC
TAGCTGTGGGATTAACGCCGGCTGAATGCTCTCCGTGGCGGTACTTTGCT
GAAAGTTAAGTCAAGGCTAGCTTTCATTTTAAAGGATTTGTGGTGCCGGC
GTTTGCTATGCGGTTTACGGGCTGTCGATGGTTCCATCTCTTCTTTTATG
TCCGAGCTGGTTTGAGTTCCCGTGCCTTCAAACGTTCCTTCTACTGCCAC
CAACTGACACCTCTCTCGGACCAGCAGCCTCGGGGCCACCAAGGGCAACC
GACTGCGGGCGAAACTGCTCAAGAGCCGCATCTTCAAGGAGATAACTGAC
AAAACCATCCAGCAGGTGAGATGAGAGGCCAGGGCGAGGGAGCAATGAGT
CCGTTACGTGCGACCATGCGGGTTGCGGCGTCGAGATGTACGCTGTAAAG
CCCTCTGCTCGTAAAAGGACTCGTGATGAAGGAAGGAACAGTCACTTGAA
CTATTCCCATTGTTTCCTACTTCACTCTCGTACAGCACTAGCTCACCATC
GGGAGGATTCTTCGCCTTACCCTTGCCTTCTGCCACCTGTTTTCTGTTTA
AAGCGGCTCCTTCTCCTTCCATTCTCGCTCGTGATCCGTTCCTGCTCTCA
CAAACTTTCTTTTGCTCCAAATGGGTTCTCTTGTCTCCCGTTTCCCTGCT
ACAGGTGCTGTACATGGACTGCGACATCGTCGTGGCCCAGACGGGCTGCG
TGCGGCCGATGCTGTCAGCAGCGTTCGGCGGGTGGCGCGACGACGAGGAC
ATCCGCTTCCGCGTCCTGTCCCCCGGCGGCGTCCGCAGGCAATTCGATCA
TCCGGAGCGGTTCCGGATCCACGCTGGGTTTTTCGCGGCGCGGCGGGACA
GGCGAGTCGCACTGCTGCGAGAGTGACCAGGAGGCGGTTTAAGCGGAATT
TGGCGCATTGTTTTGAAAGGTTTTTCTGTGTGCCGGCTGTGAGATTTTAA
CGGCGCCGGGGTATTTGTTGTGTCAGGGTTTGGGAAGAGGAGCGGAAAGG
TGGTAAAGGGACAACTTCAGTGGTGGCAATGCTGGTGGCGGCGACGGCAG
CGGCTGAAATTTTGCTGACAAGGGCAGCATTTTCTGGAACCTCTCCTCCC
GTCTTGTATGCGGCGCGTGAGGAATTGCTTTTCGTGGAGACATGGTGGGT
GGAAGAGCTCCAAATGAACGGAGATTCTGCCACGGCTGTCTTCTTGCACG
AGCCACTTCCTTGTCGAAATGCGTTCAGCGTTTTCCTCTCGCCCACCGCC
ACGCAGTCTGAGCGCCACTTCCCGCCGTTACCCCCGAACCGCCGCCTCTT
GATTTACCTCCTCCCGCCCGTGCGTGCTCCGCCCGTACGCACATGTCTGC
CGGTTTCGCCTCTGCAGGTCGTGGCGGGCGCTGGAGGCGTGGGAGGCGGA
ACTGTCCACGCTGAAATATGCCCACGACCGCCTCGCCTTTCTCGCCGCCA
AGAAGCGCGTGCGGGAGCACGCCGTCGCCACGGGCGACGCCACGGATGAC
TTTATGCGCGTCGGCACCTGGAAAGGTGCGCTTCGGCGTTGGTCCTTGGG
GATTCTTTGGTTCCTGGCTTGCTTTCTGCATATTCCTTCCTGTTTTGCGC
TTCTGACCCCTTTTTCCACGACACAGGGGTCCCAAGTTTTGTTGGGCACC
GGCAATAAAATTTCCTGGCTCCGGCCATAACAGGTTGCGTTTGCACCCTT
ATGCTAGGAAGTGCAGAGCTGCGAAATCGCAGCAAAATTCGCCTTCTGAC
ACGATTTTTGCATTAAATTTTGGTCCTGAAAAGTCTTCCAACAGTCCAAC
CAACATCTTTTCCCATCGTGTATGGACGTGGCTTCGCGGTTATATCTCGT
TTAAGCCCCGACCATTCGAGCGCGATCCGTTTTGGCCACCGCCAGAAAAC
GTCACAGCTGGTGCCCAACAAATTCTGGAACCACTTTGTTGTGAAGTGAG
GGGTATCATTTTTTCGCCGTCTCCTTTCGTTTACGTCATTCTGGTTCTGA
TTTTAGCTGGGTTTAGGACCCATTCTCATCGTCCCCTCTTCCCTGCCAAC
TTTCTCGATTACTTCACTTTGTTGCCTGCCTCCCACCGCTGCTTTCGCCG
CTCCCGCCGCTGCTGGTGCCGCTGCCGGTGGCACCGTCGTCGCCGCTGGC
TGCCCTCGCTGTCACCGCCGCCTTCGCCTGTGCTGCCACCACGCGCCGCC
GCTTCAGGGGAGTGGGAGCGGTTCGCAGACGTGCGACGGGAGCTGTCGTG
CGTGGTGCACGTGTCTCACAAGCGCTGCTTTTGGCAAGGCCGAGCCAACA
TTCAGGTAAGGATAGAAATGAGCCGGGGTAGACCCTGTTTCGTCCTCGCT
CAGAGCGACGTGAAGCAGAGATCAGTTGCTCTCGCATCGTTTCGCCTTTC
TCCATCCTAACGCTTTTTTCACGACATTTATCCGTCCTATCTCAGCGCTG
CTCCCCATTCTGACCATCCATTCGAATCTTTCCGACCTTCATCCCTTCCT
TGTTCCCGTCTCCCGCCGTCCGCTGGCGTCGCCGCATTGCCTCCTCGGTC
GGCCGGCCGGTAACTGGATTTGATCGCTCGGTTGGTGCACCGCATACACA
CTGTACGAGATGGCAGACCATAATAGAGCGGCTCAACCTGACGGTGCACG
CGGCGCACGGCGGGGCGCCCTACTGCGAGTCCGTCTGGACATACCCGTTC
ACGCTGTCGTGGCTGCCGTACAAGTCCTGCCGCAAGATCGAGACGCTGCT
ATTGCCGCGACCGTCATCGCCAGTACCGGCGCAGCCCGCATCGCCGCCGC
TGCTGCTCGACTAGCGCTCTTTGCCGACCTGCGAGGAGATGGACGGCGCT
CCCTCTCGCGCGACCTCTCGCGTGAGGAGTGGCGGCGGCGGTAGCTCGTT
TAGCACTCCAGCGGACTTGCATTTCCCGGGCTGTTGTCATTTCGGGCTTC
TTCGCTCAGCGCCAATTGATGGGTCCTGAAGAGTGGCAAGCTTTCAGGGG
GGCGGGGGCAGGCGGTAGCGCTCTTTCTGTTGGAACCTGCCCGTATCGGG
TACAATGCAGCTTTGCGGGTCAATTTTGTTTATAAGGTGGTACAAGTGGG
GGGCTGCCGATTGAAGGCGGTCAGGTTCGCAGGTTTTGACGCTTGCACGT
ACACAGTGGACATGTAAGTGGGACAGAGTAGAGCCAGAGAGAGGGGCTCA
TTCCTGACCAGAGGGCGCGCCCCCGGGGACTGGCGGCATGGGAGAACGGT
GGGGCCGAGCGGGGGTTGAAGGGCTGGGCTGAGCGAAGCAAATGGCGAAA
AGTAGCGGGCAGGCGGCCATTCGGGCATCAGATCAGACGAGGAAGCGGGA
GCCAGCCACACAGATTCACAGGTTTTAGCACGCCCTTCGAGGAATAACCT
CTGCACTCTCATGTCTGCTAATGGGCGAATGCAAACCCTGGGCGCCGTAC
TTGTTGCGGTCTTTTCTCGAAGGGTGGTGCGCGCCGCGATCCTTTGCGTG
GACGCCTCGGCCCCCATGCCCATCGTGCACCCTTTAAAACGCTGGCTGCA
TCGACTAAAGCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1538:2..4614+

>mRNA_P-wetherbeei_contig1538.1.3 ID=mRNA_P-wetherbeei_contig1538.1.3|Name=mRNA_P-wetherbeei_contig1538.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1056bp|location=Sequence derived from alignment at P-wetherbeei_contig1538:2..4614+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGAGTTCCGCACGGCCAAGAGTATCCACGCCATGCGGCCTCCAGT
TGCCCACGTCGAAGAGGACGAGCGGTTCGATGAGACTGGGACGGCGGTGG
CGCTCCTCGGGCTTGGAGTCATGGCGAGTCAGCTCAAGTGCGAAGCCGCG
GTCGAATCGCTCGGCGTCGTCGGCGGCTGGGCTGGGCGCGTGTACCTGTT
CACGGACAAGCCGCAGTGCTTTGACGTGGCATCGATGCGCCTTTCCTCGG
GTACGGACCTCCGTCTCGTTGACATTGACGACGGCCGCGACTACTCCGCC
GGCTTCGCGCTGCCCAGCCTCGGGGCCACCAAGGGCAACCGACTGCGGGC
GAAACTGCTCAAGAGCCGCATCTTCAAGGAGATAACTGACAAAACCATCC
AGCAGGTGCTGTACATGGACTGCGACATCGTCGTGGCCCAGACGGGCTGC
GTGCGGCCGATGCTGTCAGCAGCGTTCGGCGGGTGGCGCGACGACGAGGA
CATCCGCTTCCGCGTCCTGTCCCCCGGCGGCGTCCGCAGGCAATTCGATC
ATCCGGAGCGGTTCCGGATCCACGCTGGGTTTTTCGCGGCGCGGCGGGAC
AGGTCGTGGCGGGCGCTGGAGGCGTGGGAGGCGGAACTGTCCACGCTGAA
ATATGCCCACGACCGCCTCGCCTTTCTCGCCGCCAAGAAGCGCGTGCGGG
AGCACGCCGTCGCCACGGGCGACGCCACGGATGACTTTATGCGCGTCGGC
ACCTGGAAAGGGGAGTGGGAGCGGTTCGCAGACGTGCGACGGGAGCTGTC
GTGCGTGGTGCACGTGTCTCACAAGCGCTGCTTTTGGCAAGGCCGAGCCA
ACATTCAGACCATAATAGAGCGGCTCAACCTGACGGTGCACGCGGCGCAC
GGCGGGGCGCCCTACTGCGAGTCCGTCTGGACATACCCGTTCACGCTGTC
GTGGCTGCCGTACAAGTCCTGCCGCAAGATCGAGACGCTGCTATTGCCGC
GACCGTCATCGCCAGTACCGGCGCAGCCCGCATCGCCGCCGCTGCTGCTC
GACTAG
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