mRNA_P-wetherbeei_contig15374.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15374.2.1
Unique NamemRNA_P-wetherbeei_contig15374.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15374.2.1 vs. uniprot
Match: A0A7S1ZPN1_TRICV (tRNA pseudouridine(55) synthase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZPN1_TRICV)

HSP 1 Score: 105 bits (261), Expect = 1.890e-26
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1 
Query:    4 QVEVGHGGTLDPLAIGVLVIRVGTGYRQLEDYLRGRKAYTCRATLGAETDTLDSSGVFTDTAPWEHVSATDLEGALPRFCGDIMQV 261
            Q++VGHGGTLDP+A GVLV+ VG+G ++L+ YL G K Y     LG ETDTLD+ G  T T P+EHV+  ++ G LP+F G IMQ+
Sbjct:   68 QIKVGHGGTLDPMATGVLVVGVGSGTKELQGYLSGSKKYVASVRLGEETDTLDTEGNVTKTVPFEHVTMEEIRGCLPKFTGKIMQI 153
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BLAST of mRNA_P-wetherbeei_contig15374.2.1 vs. uniprot
Match: F0YN09_AURAN (tRNA pseudouridine(55) synthase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN09_AURAN)

HSP 1 Score: 102 bits (253), Expect = 8.730e-25
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 1 
Query:    4 QVEVGHGGTLDPLAIGVLVIRVGTGYRQLEDYLRGRKAYTCRATLGAETDTLDSSGVFTDTAPWEHVSATDLEGALPRFCGDIMQ 258
            +V+VGHGGTLDPLA GVLV+ VG G R+++ YL+G K Y   A LG ETDTLD+ G   + AP++HV+   LE ALP F GDI Q
Sbjct:   37 KVKVGHGGTLDPLARGVLVVGVGRGCREMQGYLKGAKRYRAVAELGKETDTLDAEGAVVEEAPFDHVTLDALEAALPAFTGDIRQ 121
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BLAST of mRNA_P-wetherbeei_contig15374.2.1 vs. uniprot
Match: A0A835Z9D0_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 9.690e-24
Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:    1 LQVEVGHGGTLDPLAIGVLVIRVGTGYRQLEDYLRGRKAYTCRATLGAETDTLDSSGVFTDTAPWEHVSATDLEGALPRFCGDIMQV 261
            ++++VGHGGTLDP+A GVLV+ +G+G ++LE YL+G K Y+    LG+ETDTLDS G  T+   W HV+   L  AL +F GDIMQV
Sbjct:   66 VKIKVGHGGTLDPMATGVLVLGIGSGTKELEKYLQGAKGYSAVGILGSETDTLDSEGQETEAMEWSHVTRDALMQALEQFRGDIMQV 152
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BLAST of mRNA_P-wetherbeei_contig15374.2.1 vs. uniprot
Match: A0A813HPZ2_POLGL (tRNA pseudouridine(55) synthase (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HPZ2_POLGL)

HSP 1 Score: 95.9 bits (237), Expect = 8.640e-23
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:   10 EVGHGGTLDPLAIGVLVIRVGTGYRQLEDYLRGRKAYTCRATLGAETDTLDSSGVFTDTAPWEHVSATDLEGALPRFCGDIMQV 261
            +VGHGGTLDP A GVLV+ +G+G R +  +L G KAY    T+G+ETDT D+SG    TAP+EHV+   +E  +P+F G+I+QV
Sbjct:   47 KVGHGGTLDPEATGVLVLGIGSGTRMMTSFLHGSKAYEATVTMGSETDTEDASGKVVATAPFEHVTKEKMEEIMPQFLGEILQV 130
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BLAST of mRNA_P-wetherbeei_contig15374.2.1 vs. uniprot
Match: A0A7S1VF52_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VF52_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.580e-23
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    7 VEVGHGGTLDPLAIGVLVIRVGTGYRQLEDYLRGRKAYTCRATLGAETDTLDSSGVFTDTAPWEHVSAT--DLEGALPRFCGDIMQV 261
            V+VGHGGTLDPLA GVL I VG+G +QL+ YL G K Y  RA  G ETDTLD  G  T  AP++H+S T   +E  LP+F G I Q+
Sbjct:   22 VKVGHGGTLDPLATGVLAIGVGSGTKQLQSYLTGPKGYFARAEFGFETDTLDMGGNVTKRAPFDHISNTKEQIEEVLPKFTGTIQQI 108
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BLAST of mRNA_P-wetherbeei_contig15374.2.1 vs. uniprot
Match: A0A7S2WB30_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB30_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.040e-22
Identity = 50/87 (57.47%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:    1 LQVEVGHGGTLDPLAIGVLVIRVGTGYRQLEDYLRGRKAYTCRATLGAETDTLDSSGVFTDTAPWEHVSATDLEGALPRFCGDIMQV 261
            ++V+VGHGGTLDPLA GVLV+ VG G +QL DYL G K Y     LGAET+TLD+ G   +  P +HV+   L GALP F GDI QV
Sbjct:   67 VKVKVGHGGTLDPLATGVLVLGVGGGCKQLTDYLSGSKRYRALGRLGAETETLDTEGKVVEECPADHVTPEALLGALPDFRGDIEQV 153
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BLAST of mRNA_P-wetherbeei_contig15374.2.1 vs. uniprot
Match: A0A7S2UD96_9STRA (tRNA pseudouridine(55) synthase n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD96_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.570e-22
Identity = 51/91 (56.04%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 LQVEVGHGGTLDPLAIGVLVIRVGTGYRQLEDYLRGRKAYTCRATLGAETDTLDSSGVFTDTAPWEHVSAT----DLEGALPRFCGDIMQV 261
            L + VGHGGTLDPLA GVLVI VG G +QL+ YL G K YT  A LG ET TLD  G  T + PWE +S +     LE  LP+F G I QV
Sbjct:  135 LMIRVGHGGTLDPLATGVLVIGVGKGTKQLQQYLNGNKRYTASAELGYETTTLDLEGNITKSVPWEQISDSIEIKSLEAILPQFKGTIQQV 225
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BLAST of mRNA_P-wetherbeei_contig15374.2.1 vs. uniprot
Match: A0A7S2MBG8_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MBG8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 5.590e-22
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 LQVEVGHGGTLDPLAIGVLVIRVGTGYRQLEDYLRGRKAYTCRATLGAETDTLDSSGVFTDTAPWEHVSATDLEGALPRFCGDIMQV 261
            ++V+VGHGGTLDPLA GVLV+ +G G RQL DYL G K Y     LG +TDTLDS G      PW+HV+   L  AL  F G+I+Q+
Sbjct:   83 VKVKVGHGGTLDPLATGVLVLGIGKGCRQLTDYLAGAKRYRAVGKLGMKTDTLDSLGEAVAEKPWDHVTDAQLSDALEAFRGEILQI 169
[Close]
BLAST of mRNA_P-wetherbeei_contig15374.2.1 vs. uniprot
Match: A0A1Z5K540_FISSO (tRNA pseudouridine(55) synthase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K540_FISSO)

HSP 1 Score: 95.1 bits (235), Expect = 8.020e-22
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    4 QVEVGHGGTLDPLAIGVLVIRVGTGYRQLEDYLRGRKAYTCRATLGAETDTLDSSGVFTDTAPWEHVSATDLEGALPRFCGDIMQV 261
            ++++GHGGTLDPLA GVLV+ VG G +QLE YL G KAY   A LG ET+TLD  G  T  A ++H+   DLE   P F G I Q+
Sbjct:   69 RIKIGHGGTLDPLATGVLVLGVGKGTKQLESYLSGSKAYRAGAALGFETNTLDMEGNITRRATFDHIQPIDLERVRPHFVGTIEQI 154
[Close]
BLAST of mRNA_P-wetherbeei_contig15374.2.1 vs. uniprot
Match: A0A0D2MSW8_HYPSF (tRNA pseudouridine(55) synthase n=1 Tax=Hypholoma sublateritium (strain FD-334 SS-4) TaxID=945553 RepID=A0A0D2MSW8_HYPSF)

HSP 1 Score: 95.5 bits (236), Expect = 1.390e-21
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:    4 QVEVGHGGTLDPLAIGVLVIRVGTGYRQLEDYLRGRKAYTCRATLGAETDTLDSSGVFTDTAPWEHVSATDLEGALPRFCGDIMQV 261
             V++G GGTLDPLA GVLVI VG G ++L D+L   K Y     LG ETDT DS GV    APW+HVS   +E ALP+F G+I Q+
Sbjct:   67 SVKIGQGGTLDPLADGVLVIGVGKGTKKLNDFLNCTKEYETTCLLGCETDTYDSEGVRVRLAPWQHVSREKVEAALPQFQGEITQI 152
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15374.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1ZPN1_TRICV1.890e-2654.65tRNA pseudouridine(55) synthase (Fragment) n=1 Tax... [more]
F0YN09_AURAN8.730e-2557.65tRNA pseudouridine(55) synthase (Fragment) n=1 Tax... [more]
A0A835Z9D0_9STRA9.690e-2454.02tRNA pseudouridine(55) synthase n=1 Tax=Tribonema ... [more]
A0A813HPZ2_POLGL8.640e-2352.38tRNA pseudouridine(55) synthase (Fragment) n=1 Tax... [more]
A0A7S1VF52_9STRA9.580e-2356.32tRNA pseudouridine(55) synthase n=1 Tax=Grammatoph... [more]
A0A7S2WB30_9STRA1.040e-2257.47tRNA pseudouridine(55) synthase n=1 Tax=Rhizochrom... [more]
A0A7S2UD96_9STRA2.570e-2256.04tRNA pseudouridine(55) synthase n=2 Tax=Attheya se... [more]
A0A7S2MBG8_9STRA5.590e-2254.02tRNA pseudouridine(55) synthase n=1 Tax=Dictyocha ... [more]
A0A1Z5K540_FISSO8.020e-2253.49tRNA pseudouridine(55) synthase n=1 Tax=Fistulifer... [more]
A0A0D2MSW8_HYPSF1.390e-2154.65tRNA pseudouridine(55) synthase n=1 Tax=Hypholoma ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15374contigP-wetherbeei_contig15374:1075..1347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009041799.1
Preferred namePUS4
PFAMsTruB_C_2,TruB_N
Model size273
Max annot lvl2759|Eukaryota
KEGG koko:K03177
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001522,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0034337,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990481
Exons1
Evalue1.43e-25
EggNOG OGsCOG0130@1|root,KOG2529@2759|Eukaryota
EC5.4.99.25
DescriptionmRNA pseudouridine synthesis
Cds size273
COG categoryJ
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186053.6307561-CDS-P-wetherbeei_contig15374:1074..13471683186053.6307561-CDS-P-wetherbeei_contig15374:1074..1347Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15374 1075..1347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15374.2.1prot_P-wetherbeei_contig15374.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15374 1075..1347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15374.2.1

>prot_P-wetherbeei_contig15374.2.1 ID=prot_P-wetherbeei_contig15374.2.1|Name=mRNA_P-wetherbeei_contig15374.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
LQVEVGHGGTLDPLAIGVLVIRVGTGYRQLEDYLRGRKAYTCRATLGAET
DTLDSSGVFTDTAPWEHVSATDLEGALPRFCGDIMQVMHA*
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mRNA from alignment at P-wetherbeei_contig15374:1075..1347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15374.2.1 ID=mRNA_P-wetherbeei_contig15374.2.1|Name=mRNA_P-wetherbeei_contig15374.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig15374:1075..1347+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCAGGTGGAGGTAGGCCACGGCGGTACGCTCGACCCGCTGGCGATAGG
CGTCCTCGTCATCCGCGTTGGCACCGGCTACCGTCAACTGGAGGACTACC
TGCGGGGCCGCAAGGCATACACCTGCCGGGCGACCCTCGGAGCGGAGACG
GACACGCTGGACAGCTCCGGAGTTTTCACGGATACAGCGCCGTGGGAGCA
CGTTTCGGCCACAGACCTCGAGGGAGCACTGCCGCGGTTCTGTGGTGACA
TCATGCAAGTGATGCACGCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15374:1075..1347+

>mRNA_P-wetherbeei_contig15374.2.1 ID=mRNA_P-wetherbeei_contig15374.2.1|Name=mRNA_P-wetherbeei_contig15374.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig15374:1075..1347+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCAGGTGGAGGTAGGCCACGGCGGTACGCTCGACCCGCTGGCGATAGG
CGTCCTCGTCATCCGCGTTGGCACCGGCTACCGTCAACTGGAGGACTACC
TGCGGGGCCGCAAGGCATACACCTGCCGGGCGACCCTCGGAGCGGAGACG
GACACGCTGGACAGCTCCGGAGTTTTCACGGATACAGCGCCGTGGGAGCA
CGTTTCGGCCACAGACCTCGAGGGAGCACTGCCGCGGTTCTGTGGTGACA
TCATGCAAGTGATGCACGCTTGA
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