mRNA_P-wetherbeei_contig15369.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15369.2.1
Unique NamemRNA_P-wetherbeei_contig15369.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15369.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15369contigP-wetherbeei_contig15369:116..1311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1196
Hectar predicted targeting categoryother localisation
Exons1
Cds size924
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186053.5306873-UTR-P-wetherbeei_contig15369:115..3021683186053.5306873-UTR-P-wetherbeei_contig15369:115..302Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15369 116..302 +
1683186053.5505211-UTR-P-wetherbeei_contig15369:1226..13111683186053.5505211-UTR-P-wetherbeei_contig15369:1226..1311Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15369 1227..1311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186053.5408242-CDS-P-wetherbeei_contig15369:302..12261683186053.5408242-CDS-P-wetherbeei_contig15369:302..1226Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15369 303..1226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15369.2.1prot_P-wetherbeei_contig15369.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15369 303..1226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15369.2.1

>prot_P-wetherbeei_contig15369.2.1 ID=prot_P-wetherbeei_contig15369.2.1|Name=mRNA_P-wetherbeei_contig15369.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=308bp
MRRHRSESNPNQDLRSRQCKTTDTSRMHLARLRTIAEREDFRVFRYNDHL
LSKRYPRMRSLQASIFAGEEPAYVNAYFGITLWVRFLLSRGFTDERRMGY
LWTVENDNLYAGHVAEFIRAVIADPAAVGIDYLAQKVIPAPGWWSHAEAN
TWPADTAHVWIADEFVMRFSPRLLLTLESLLLLNIVMYGEAYPATVCRAV
DWCRAANFTGIAAMELGRPGQAEGDCWYQWNCRVTYEQFTGFLTDPARKN
QWYHANKWLYDEGARGVYAALPSAAARTGRTAGTAAAAATAAAAAAAAEE
ARERFQR*
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mRNA from alignment at P-wetherbeei_contig15369:116..1311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15369.2.1 ID=mRNA_P-wetherbeei_contig15369.2.1|Name=mRNA_P-wetherbeei_contig15369.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1196bp|location=Sequence derived from alignment at P-wetherbeei_contig15369:116..1311+ (Phaeothamnion wetherbeei SAG_119_79)
AACACGACGTGAGAGGTGTTACGCTCCCTTTGGCGTTCCCTCCTTTTTCC
ATAAACGTTTTGTCTTTCGTTGGAACCAGCAAGCCAGCGGCTTTGCCCTC
CCAGAGCTTTTGCTAACCTTCCAAACTGGAAACGAGGGACGACTCTTGTT
GCAAGTTATTACTATCGTTCAAATCCTGCGTCTACTCATGCGCCGTCATC
GTTCGGAATCCAACCCCAATCAAGACCTCAGGAGTCGGCAATGCAAGACG
ACTGATACGTCGCGGATGCACCTGGCACGCCTCCGGACCATTGCGGAGCG
CGAGGACTTCCGCGTCTTCCGCTACAACGACCACCTCCTCTCCAAGCGTT
ACCCGCGCATGCGCAGCCTACAGGCGTCCATCTTCGCCGGCGAGGAACCC
GCCTATGTTAACGCCTACTTTGGCATCACGCTCTGGGTCCGCTTTTTGCT
CTCGCGCGGATTCACTGATGAGCGCCGGATGGGCTACCTTTGGACCGTCG
AGAACGACAACCTCTACGCCGGACACGTGGCGGAATTTATCCGGGCGGTT
ATCGCCGACCCGGCTGCCGTCGGGATCGACTACCTGGCGCAAAAGGTGAT
TCCGGCGCCGGGCTGGTGGAGCCACGCCGAGGCCAATACCTGGCCAGCGG
ACACGGCGCACGTCTGGATCGCAGACGAGTTCGTCATGCGGTTCAGCCCG
CGGCTGCTGCTGACGCTGGAGAGCCTGCTTCTTTTGAACATCGTCATGTA
CGGCGAGGCTTACCCGGCGACTGTCTGCCGGGCAGTCGACTGGTGCCGCG
CCGCCAACTTTACGGGCATCGCAGCGATGGAGCTGGGGCGGCCGGGCCAG
GCGGAGGGCGATTGCTGGTATCAGTGGAATTGCCGCGTGACGTATGAGCA
GTTCACCGGGTTCCTGACAGACCCGGCGCGAAAAAACCAGTGGTACCACG
CCAACAAGTGGCTGTATGACGAGGGCGCCCGTGGCGTCTACGCCGCGCTG
CCGTCGGCGGCGGCGAGGACAGGAAGAACGGCAGGAACGGCAGCTGCGGC
GGCGACAGCGGCGGCTGCAGCTGCAGCAGCAGAAGAGGCCAGAGAACGCT
TTCAAAGGTAGAGGGTTTGGCAAAATTTCTTGAGGCGAGGAGAGAGAGAT
GACTTGGAACCCAGATTATTACCTCTTTACTCTCGCTCGTTAAGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15369:116..1311+

>mRNA_P-wetherbeei_contig15369.2.1 ID=mRNA_P-wetherbeei_contig15369.2.1|Name=mRNA_P-wetherbeei_contig15369.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=924bp|location=Sequence derived from alignment at P-wetherbeei_contig15369:116..1311+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCGTCATCGTTCGGAATCCAACCCCAATCAAGACCTCAGGAGTCG
GCAATGCAAGACGACTGATACGTCGCGGATGCACCTGGCACGCCTCCGGA
CCATTGCGGAGCGCGAGGACTTCCGCGTCTTCCGCTACAACGACCACCTC
CTCTCCAAGCGTTACCCGCGCATGCGCAGCCTACAGGCGTCCATCTTCGC
CGGCGAGGAACCCGCCTATGTTAACGCCTACTTTGGCATCACGCTCTGGG
TCCGCTTTTTGCTCTCGCGCGGATTCACTGATGAGCGCCGGATGGGCTAC
CTTTGGACCGTCGAGAACGACAACCTCTACGCCGGACACGTGGCGGAATT
TATCCGGGCGGTTATCGCCGACCCGGCTGCCGTCGGGATCGACTACCTGG
CGCAAAAGGTGATTCCGGCGCCGGGCTGGTGGAGCCACGCCGAGGCCAAT
ACCTGGCCAGCGGACACGGCGCACGTCTGGATCGCAGACGAGTTCGTCAT
GCGGTTCAGCCCGCGGCTGCTGCTGACGCTGGAGAGCCTGCTTCTTTTGA
ACATCGTCATGTACGGCGAGGCTTACCCGGCGACTGTCTGCCGGGCAGTC
GACTGGTGCCGCGCCGCCAACTTTACGGGCATCGCAGCGATGGAGCTGGG
GCGGCCGGGCCAGGCGGAGGGCGATTGCTGGTATCAGTGGAATTGCCGCG
TGACGTATGAGCAGTTCACCGGGTTCCTGACAGACCCGGCGCGAAAAAAC
CAGTGGTACCACGCCAACAAGTGGCTGTATGACGAGGGCGCCCGTGGCGT
CTACGCCGCGCTGCCGTCGGCGGCGGCGAGGACAGGAAGAACGGCAGGAA
CGGCAGCTGCGGCGGCGACAGCGGCGGCTGCAGCTGCAGCAGCAGAAGAG
GCCAGAGAACGCTTTCAAAGGTAG
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