mRNA_P-wetherbeei_contig15341.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15341.1.1
Unique NamemRNA_P-wetherbeei_contig15341.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15341.1.1 vs. uniprot
Match: A0A835ZLE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE8_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 8.860e-10
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 1 
Query:    1 VMLDSTIVVGHGIVMYVRGSPSATVDGSGSVRLFKVATGGTLHLSDLVLTRGYAVDN------GGAVYVESRAVASIMSCTFTNNTAFYYGGGVANN-GNVTNMSDCMFTSN 315
            V++D  IVV     + + G+P A +DG  + RL  V  G T+HL D+ L  G+A+ +      GGA +V+S+ + SI+S  F  N     GG +    G   N +DC+F  N
Sbjct:   80 VLVDEPIVVAEKASLKIVGAPGAVIDGHSTTRLLVVNAGSTVHLQDMTLQNGHALTDATEAPWGGAAFVKSQGLLSIISSRFWFNEGQEVGGAIYQEAGGKLNCTDCVFLEN 191
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BLAST of mRNA_P-wetherbeei_contig15341.1.1 vs. uniprot
Match: UPI00190998EC (choice-of-anchor D domain-containing protein n=1 Tax=Luteolibacter yonseiensis TaxID=1144680 RepID=UPI00190998EC)

HSP 1 Score: 52.4 bits (124), Expect = 1.410e-5
Identity = 33/83 (39.76%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   70 TVDGSGSVRLFKVATGGTLHLSDLVLT--RGYAVDNGGAVYVESRAVASIMSCTFTNNTAFYYGGGVANNGNVT-NMSDCMFT 309
            TVDG G+VRLF+V T G + L  L LT  +G  V +G    + +   + +  CTF  N+A   GGG+ N  N T  +  C FT
Sbjct:  109 TVDGGGTVRLFRVDTAGNVTLRGLTLTAGKGTGVADGFGGALHNLGTSVVDRCTFKGNSATQSGGGIFNGQNATMTVQSCTFT 191
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BLAST of mRNA_P-wetherbeei_contig15341.1.1 vs. uniprot
Match: A0A2D7HV91_9DELT (Probable pectate lyase C n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2D7HV91_9DELT)

HSP 1 Score: 51.6 bits (122), Expect = 2.460e-5
Identity = 28/77 (36.36%), Postives = 45/77 (58.44%), Query Frame = 1 
Query:   55 GSPSATVDGSGSVRLFKVATGGTLHLSDLVLTRGYAVDNGGAVYVESRAVASIMSCTFTNNTAFYYGGGVANNGNVT 285
            G+P+  +DG G++R+ + A   +  + +LV+T G A   GG +Y    A  +  +C F  N+A +YGGG+A  GN T
Sbjct:   78 GNPTTIIDGQGAIRVLECAWLLSPEIENLVVTGGQA-SRGGGLYCHLGARPTFRNCVFLENSASFYGGGIACLGNTT 153
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BLAST of mRNA_P-wetherbeei_contig15341.1.1 vs. uniprot
Match: A0A354GU39_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GU39_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 8.490e-5
Identity = 29/76 (38.16%), Postives = 40/76 (52.63%), Query Frame = 1 
Query:   55 GSPSATVDGSGSVRLFKVATGGTLHLSDLVLTRGYAVDN---------GGAVYVESRAVASIMSCTFTNNTAFYYG 255
            G P  T+ G    R+F+VA G ++ LSDL +T G  V N         GG V V+  A  ++  C+FT NTA + G
Sbjct:  103 GQPPVTISGDNLSRIFEVAGGASVTLSDLAITGGNGVANPTDNPQYGAGGGVLVDGGASLNVTDCSFTGNTAPFGG 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15341.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZLE8_9STRA8.860e-1034.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00190998EC1.410e-539.76choice-of-anchor D domain-containing protein n=1 T... [more]
A0A2D7HV91_9DELT2.460e-536.36Probable pectate lyase C n=1 Tax=Deltaproteobacter... [more]
A0A354GU39_9BACT8.490e-538.16Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15341contigP-wetherbeei_contig15341:1300..1614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1173028.ANKO01000041_gene3212
PFAMsBeta_helix,Calx-beta,Chlam_PMP,DUF4347,HemolysinCabind
Model size315
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.56e-06
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1G0ZC@1117|Cyanobacteria,1H8KD@1150|Oscillatoriales
DescriptionPFAM Hemolysin-type calcium-binding repeat (2 copies)
Cds size312
COG categoryQ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186052.7734213-UTR-P-wetherbeei_contig15341:1299..13021683186052.7734213-UTR-P-wetherbeei_contig15341:1299..1302Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15341 1300..1302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186052.7845607-CDS-P-wetherbeei_contig15341:1302..16141683186052.7845607-CDS-P-wetherbeei_contig15341:1302..1614Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15341 1303..1614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15341.1.1prot_P-wetherbeei_contig15341.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15341 1303..1614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15341.1.1

>prot_P-wetherbeei_contig15341.1.1 ID=prot_P-wetherbeei_contig15341.1.1|Name=mRNA_P-wetherbeei_contig15341.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MLDSTIVVGHGIVMYVRGSPSATVDGSGSVRLFKVATGGTLHLSDLVLTR
GYAVDNGGAVYVESRAVASIMSCTFTNNTAFYYGGGVANNGNVTNMSDCM
FTSN
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mRNA from alignment at P-wetherbeei_contig15341:1300..1614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15341.1.1 ID=mRNA_P-wetherbeei_contig15341.1.1|Name=mRNA_P-wetherbeei_contig15341.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig15341:1300..1614+ (Phaeothamnion wetherbeei SAG_119_79)
GTGATGCTGGACTCAACCATCGTGGTTGGACATGGTATCGTAATGTACGT
CAGGGGATCACCCTCAGCAACCGTCGACGGCTCTGGCAGCGTGCGGCTGT
TCAAGGTAGCGACTGGTGGTACGCTGCATCTAAGTGATTTGGTTCTGACT
CGCGGCTACGCGGTGGACAACGGCGGCGCTGTTTACGTCGAAAGTCGTGC
AGTTGCATCAATTATGTCGTGTACCTTCACTAACAACACGGCGTTCTACT
ACGGCGGCGGCGTCGCCAATAATGGCAATGTGACAAACATGAGTGACTGC
ATGTTCACCAGCAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15341:1300..1614+

>mRNA_P-wetherbeei_contig15341.1.1 ID=mRNA_P-wetherbeei_contig15341.1.1|Name=mRNA_P-wetherbeei_contig15341.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig15341:1300..1614+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGACTCAACCATCGTGGTTGGACATGGTATCGTAATGTACGTCAG
GGGATCACCCTCAGCAACCGTCGACGGCTCTGGCAGCGTGCGGCTGTTCA
AGGTAGCGACTGGTGGTACGCTGCATCTAAGTGATTTGGTTCTGACTCGC
GGCTACGCGGTGGACAACGGCGGCGCTGTTTACGTCGAAAGTCGTGCAGT
TGCATCAATTATGTCGTGTACCTTCACTAACAACACGGCGTTCTACTACG
GCGGCGGCGTCGCCAATAATGGCAATGTGACAAACATGAGTGACTGCATG
TTCACCAGCAAC
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