mRNA_P-wetherbeei_contig15340.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15340.1.1
Unique NamemRNA_P-wetherbeei_contig15340.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15340.1.1 vs. uniprot
Match: D7FIZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ4_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 4.770e-25
Identity = 49/73 (67.12%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 RNTVMTFEPFHTIWLGEDTAGFSVSPAEGTLNRRNGEPIELTVSYKGSGPADNRIATLVVETEEDKFLYTIEG 219
            ++TVMTFEPFH  ++G D  GF V+P EGTLNRR G+P E  VSY G+GP DNRI TLVVETEEDK++Y IEG
Sbjct:  305 KSTVMTFEPFHCTFVG-DARGFKVTPEEGTLNRRGGDPQEFDVSYMGNGPGDNRIGTLVVETEEDKWIYKIEG 376
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BLAST of mRNA_P-wetherbeei_contig15340.1.1 vs. uniprot
Match: A0A835YTJ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ3_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.080e-21
Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 RNTVMTFEPFHTIWLGEDTAGFSVSPAEGTLNRRNGEPIELTVSYKGSGPADNRIATLVVETEEDKFLYTIEGRTE 228
            +N+VMTFEPFH  ++GE   GF V P  GTLNRR+GE I + VS+K +GP D R A LV+ETEEDK++Y +EGR++
Sbjct:  284 KNSVMTFEPFHAEYVGE-AEGFGVDPKTGTLNRRSGEAIPVQVSFKANGPGDARNALLVIETEEDKWVYEVEGRSD 358
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BLAST of mRNA_P-wetherbeei_contig15340.1.1 vs. uniprot
Match: A0A7S4B1V0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B1V0_CHRCT)

HSP 1 Score: 68.9 bits (167), Expect = 5.530e-12
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:    1 RNTVMTFEPFHTIWLGEDTAGFSVSPAEGTLNRRNGEPIELTVSYKGSGPADNRIATLVVETEEDKFLYTIEGRT 225
            +N   TF P+  ++  + +  F VSP  GTLNRR+GEP+ L V +      + R ATLVVETE+ K +YT  G T
Sbjct:  267 KNDFNTFAPYRVLFTADSSPEFDVSPTAGTLNRRSGEPLNLIVRFTPQTYGEPRTATLVVETEDMKKIYTFVGST 341
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BLAST of mRNA_P-wetherbeei_contig15340.1.1 vs. uniprot
Match: A0A7S4B1S5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B1S5_CHRCT)

HSP 1 Score: 68.9 bits (167), Expect = 6.070e-12
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1 
Query:    1 RNTVMTFEPFHTIWLGEDTAGFSVSPAEGTLNRRNGEPIELTVSYKGSGPADNRIATLVVETEEDKFLYTIEGRT 225
            +N   TF P+  ++  + +  F VSP  GTLNRR+GEP+ L V +      + R ATLVVETE+ K +YT  G T
Sbjct:  294 KNDFNTFAPYRVLFTADSSPEFDVSPTAGTLNRRSGEPLNLIVRFTPQTYGEPRTATLVVETEDMKKIYTFVGST 368
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BLAST of mRNA_P-wetherbeei_contig15340.1.1 vs. uniprot
Match: A0A7S0Q865_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q865_9EUKA)

HSP 1 Score: 61.6 bits (148), Expect = 2.230e-9
Identity = 31/75 (41.33%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:    1 RNTVMTFEPFHTIWLGEDTAGFSVSPAEGTLNRRNGEPIELTVSYKGSGPADNRIATLVVETEEDKFLYTIEGRT 225
            +N + TF PF   +    +  F V+P  GT+NRR+GEPIELTV +      +  +ATL+ ETE+ K  Y   G T
Sbjct:  247 KNQLNTFAPFQAGFAPGSSDAFQVTPNAGTMNRRSGEPIELTVRFTPKVYGEPVVATLIFETEDFKHAYQFIGST 321
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BLAST of mRNA_P-wetherbeei_contig15340.1.1 vs. uniprot
Match: A0A7S2UY32_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY32_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.840e-8
Identity = 25/75 (33.33%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:    1 RNTVMTFEPFHTIWLGEDTAGFSVSPAEGTLNRRNGEPIELTVSYKGSGPADNRIATLVVETEEDKFLYTIEGRT 225
            +N VMT++ +   +  + +  F V    GT+ +R G P  L + Y  +G +   + TLVV+TEE K+++ I G T
Sbjct:  328 KNIVMTYQDYRAAFTPDTSPNFDVQNGVGTMEKRGGAPTMLQIGYTAAGVSAEEVGTLVVDTEEFKWVFKITGST 402
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BLAST of mRNA_P-wetherbeei_contig15340.1.1 vs. uniprot
Match: A0A7S4E4Q3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E4Q3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.460e-6
Identity = 25/67 (37.31%), Postives = 33/67 (49.25%), Query Frame = 1 
Query:   13 MTFEPFHTIWLGEDTAGFSVSPAEGTLNRRNGEPIELTVSYKGSGPADNRIATLVVETEEDKFLYTI 213
            M FE F+  W  E   GFSVSP +G + RR GEP    +  K  G    R+  L +   +D   +TI
Sbjct:  106 MGFEDFYAGWSPETPPGFSVSPIQGRMERRGGEPSLFDIEVKADGQTGERVGYLCIVLPDDDEQFTI 172
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BLAST of mRNA_P-wetherbeei_contig15340.1.1 vs. uniprot
Match: A0A8J2SV40_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SV40_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.480e-6
Identity = 25/67 (37.31%), Postives = 33/67 (49.25%), Query Frame = 1 
Query:   13 MTFEPFHTIWLGEDTAGFSVSPAEGTLNRRNGEPIELTVSYKGSGPADNRIATLVVETEEDKFLYTI 213
            M FE F+  W  E   GFSVSP +G + RR GEP    +  K  G    R+  L +   +D   +TI
Sbjct:  163 MGFEDFYAGWSPETPPGFSVSPIQGRMERRGGEPSLFDIEVKADGQTGERVGYLCIVLPDDDEQFTI 229
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BLAST of mRNA_P-wetherbeei_contig15340.1.1 vs. uniprot
Match: A0A7S0HUH8_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HUH8_9EUKA)

HSP 1 Score: 48.9 bits (115), Expect = 6.740e-5
Identity = 27/75 (36.00%), Postives = 36/75 (48.00%), Query Frame = 1 
Query:    1 RNTVMTFEPFHTIWLGEDTAGFSVSPAEGTLNRRNGEPIELTVSYKGSGPADNRIATLVVETEEDKFLYTIEGRT 225
            R   MT+EPF   +  +    FSVSPA G + RRNG+P  + V+   +G      ATL     E+K      G T
Sbjct:  175 RPVAMTYEPFFCGFTPDSHPAFSVSPASGKMERRNGDPTTVIVTCNPNGAKGELKATLCFILPEEKMFSQFFGIT 249
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15340.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FIZ4_ECTSI4.770e-2567.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTJ3_9STRA2.080e-2157.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4B1V0_CHRCT5.530e-1244.00Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4B1S5_CHRCT6.070e-1244.00Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0Q865_9EUKA2.230e-941.33Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2UY32_9STRA5.840e-833.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4E4Q3_9STRA1.460e-637.31Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SV40_9STRA2.480e-637.31Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S0HUH8_9EUKA6.740e-536.00Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15340contigP-wetherbeei_contig15340:1389..1619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIZ4
Model size231
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.54e-24
EggNOG OGs2E3A2@1|root,2SADX@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_005030.1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186052.718873-CDS-P-wetherbeei_contig15340:1388..16071683186052.718873-CDS-P-wetherbeei_contig15340:1388..1607Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15340 1389..1607 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186052.730731-UTR-P-wetherbeei_contig15340:1607..16191683186052.730731-UTR-P-wetherbeei_contig15340:1607..1619Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15340 1608..1619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15340.1.1prot_P-wetherbeei_contig15340.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15340 1389..1607 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15340.1.1

>prot_P-wetherbeei_contig15340.1.1 ID=prot_P-wetherbeei_contig15340.1.1|Name=mRNA_P-wetherbeei_contig15340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
MTFEPFHTIWLGEDTAGFSVSPAEGTLNRRNGEPIELTVSYKGSGPADNR
IATLVVETEEDKFLYTIEGRTE*
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mRNA from alignment at P-wetherbeei_contig15340:1389..1619-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15340.1.1 ID=mRNA_P-wetherbeei_contig15340.1.1|Name=mRNA_P-wetherbeei_contig15340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig15340:1389..1619- (Phaeothamnion wetherbeei SAG_119_79)
CGCAACACGGTGATGACGTTCGAGCCGTTCCACACCATCTGGCTGGGAGA
GGACACGGCCGGCTTCAGCGTGTCGCCCGCCGAGGGCACGCTGAACCGAC
GCAATGGCGAGCCCATCGAGCTGACGGTGTCGTACAAGGGTTCGGGCCCG
GCCGATAACCGCATCGCCACGCTCGTCGTCGAGACGGAGGAGGACAAGTT
CCTCTACACCATTGAGGGGCGCACCGAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15340:1389..1619-

>mRNA_P-wetherbeei_contig15340.1.1 ID=mRNA_P-wetherbeei_contig15340.1.1|Name=mRNA_P-wetherbeei_contig15340.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig15340:1389..1619- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGTTCGAGCCGTTCCACACCATCTGGCTGGGAGAGGACACGGCCGG
CTTCAGCGTGTCGCCCGCCGAGGGCACGCTGAACCGACGCAATGGCGAGC
CCATCGAGCTGACGGTGTCGTACAAGGGTTCGGGCCCGGCCGATAACCGC
ATCGCCACGCTCGTCGTCGAGACGGAGGAGGACAAGTTCCTCTACACCAT
TGAGGGGCGCACCGAGTGA
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