mRNA_P-wetherbeei_contig1534.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1534.2.1
Unique NamemRNA_P-wetherbeei_contig1534.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1534.2.1 vs. uniprot
Match: A0A7R9WCD3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WCD3_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 8.040e-23
Identity = 38/55 (69.09%), Postives = 52/55 (94.55%), Query Frame = 1
Query:    1 NRVAFAALGFAKPHVVIMDEPTNHLDMDTIDALIEAIRNFKGGVVVVSHDQHFIS 165
            +R+AFAAL + KPHV+I DEPTNHLDM++IDAL+EA+++FKGG+VVVSHDQ+F++
Sbjct:   34 SRIAFAALAYQKPHVIIFDEPTNHLDMESIDALVEAVKDFKGGIVVVSHDQYFVT 88          
BLAST of mRNA_P-wetherbeei_contig1534.2.1 vs. uniprot
Match: A0A482RY60_9ARCH (ABC-F family ATP-binding cassette domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RY60_9ARCH)

HSP 1 Score: 90.9 bits (224), Expect = 2.920e-22
Identity = 40/56 (71.43%), Postives = 49/56 (87.50%), Query Frame = 1
Query:    1 NRVAFAALGFAKPHVVIMDEPTNHLDMDTIDALIEAIRNFKGGVVVVSHDQHFISQ 168
            +R AFA L F KPHVVIMDEPTNHLDM  I+ALI+A++NF GGV+++SHDQHFI+Q
Sbjct:   24 SRAAFALLTFQKPHVVIMDEPTNHLDMGAIEALIDALKNFHGGVLIISHDQHFINQ 79          
BLAST of mRNA_P-wetherbeei_contig1534.2.1 vs. uniprot
Match: A0A7S2UP03_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UP03_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.300e-21
Identity = 39/55 (70.91%), Postives = 52/55 (94.55%), Query Frame = 1
Query:    1 NRVAFAALGFAKPHVVIMDEPTNHLDMDTIDALIEAIRNFKGGVVVVSHDQHFIS 165
            +RVAFA+L F +PHV+IMDEPTNHLDM++IDAL+EAI++F+GG++VVSHDQ FI+
Sbjct:   46 SRVAFASLAFQQPHVIIMDEPTNHLDMESIDALVEAIKDFRGGLMVVSHDQFFIT 100          
BLAST of mRNA_P-wetherbeei_contig1534.2.1 vs. uniprot
Match: A0A7S2SHV6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SHV6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.700e-21
Identity = 41/56 (73.21%), Postives = 53/56 (94.64%), Query Frame = 1
Query:    1 NRVAFAALGFAKPHVVIMDEPTNHLDMDTIDALIEAIRNFKGGVVVVSHDQHFISQ 168
            +RVAFAAL + KPHV+IMDEPTNHLDM++IDAL+EA++N+KGG+V VSHDQ+FI+Q
Sbjct:  320 SRVAFAALAYQKPHVIIMDEPTNHLDMESIDALVEALQNYKGGLVCVSHDQYFITQ 375          
BLAST of mRNA_P-wetherbeei_contig1534.2.1 vs. uniprot
Match: A0A836CKX3_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKX3_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.810e-21
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 NRVAFAALGFAKPHVVIMDEPTNHLDMDTIDALIEAIRNFKGGVVVVSHDQHFISQ 168
            +RVAFAAL ++ PHV+IMDEPTNHLDM+TI+ALI+A+R FKG V+ VSHDQHFISQ
Sbjct:  643 SRVAFAALAYSNPHVIIMDEPTNHLDMETINALIQALREFKGAVICVSHDQHFISQ 698          
BLAST of mRNA_P-wetherbeei_contig1534.2.1 vs. uniprot
Match: K0TIP2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIP2_THAOC)

HSP 1 Score: 94.4 bits (233), Expect = 3.850e-21
Identity = 39/55 (70.91%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 NRVAFAALGFAKPHVVIMDEPTNHLDMDTIDALIEAIRNFKGGVVVVSHDQHFIS 165
            +RVAFA+L + KPHV+IMDEPTNHLDM++IDAL+EA+++F+GG++VVSHDQHFI+
Sbjct:  680 SRVAFASLAYQKPHVIIMDEPTNHLDMESIDALVEAVKDFRGGLIVVSHDQHFIT 734          
BLAST of mRNA_P-wetherbeei_contig1534.2.1 vs. uniprot
Match: A0A7S0FMR8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FMR8_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.300e-21
Identity = 35/55 (63.64%), Postives = 51/55 (92.73%), Query Frame = 1
Query:    1 NRVAFAALGFAKPHVVIMDEPTNHLDMDTIDALIEAIRNFKGGVVVVSHDQHFIS 165
            +RVAFAAL + KPHV++ DEP+NHLDM++IDAL+ A+++++GG+VVVSHD+HF+S
Sbjct:   13 SRVAFAALAYQKPHVIVFDEPSNHLDMESIDALVGAVKDYRGGIVVVSHDEHFMS 67          
BLAST of mRNA_P-wetherbeei_contig1534.2.1 vs. uniprot
Match: A0A7S2R4V8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R4V8_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.490e-20
Identity = 37/56 (66.07%), Postives = 52/56 (92.86%), Query Frame = 1
Query:    1 NRVAFAALGFAKPHVVIMDEPTNHLDMDTIDALIEAIRNFKGGVVVVSHDQHFISQ 168
            +RV FAAL +++PH+++MDEPTNHLD+ TIDALI A+R+F+GGV++VSHDQHFI++
Sbjct:  645 SRVVFAALAYSRPHIIVMDEPTNHLDIQTIDALIHAVRDFRGGVILVSHDQHFINK 700          
BLAST of mRNA_P-wetherbeei_contig1534.2.1 vs. uniprot
Match: A0A7S0SWF2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SWF2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.070e-20
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    1 NRVAFAALGFAKPHVVIMDEPTNHLDMDTIDALIEAIRNFKGGVVVVSHDQHFIS 165
            +RVAFA L + KPHVVI+DEPTNHLDM+ I+ALI A++ F GGV+VVSHDQHFI+
Sbjct:   88 SRVAFACLTYTKPHVVILDEPTNHLDMNAIEALINALKKFTGGVLVVSHDQHFIT 142          
BLAST of mRNA_P-wetherbeei_contig1534.2.1 vs. uniprot
Match: A0A2P4X5V2_9STRA (ABCF/EF-3b transporter-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X5V2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.020e-20
Identity = 37/55 (67.27%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    1 NRVAFAALGFAKPHVVIMDEPTNHLDMDTIDALIEAIRNFKGGVVVVSHDQHFIS 165
            +RV FA + +  PHVV++DEPTNHLDM+TIDALI+A+R +KGGVV+VSHDQHF++
Sbjct:  121 SRVGFALMTWRLPHVVVLDEPTNHLDMETIDALIDALREYKGGVVIVSHDQHFVT 175          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1534.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9WCD3_9STRA8.040e-2369.09Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A482RY60_9ARCH2.920e-2271.43ABC-F family ATP-binding cassette domain-containin... [more]
A0A7S2UP03_9STRA1.300e-2170.91Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2SHV6_9STRA1.700e-2173.21Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A836CKX3_9STRA2.810e-2175.00P-loop containing nucleoside triphosphate hydrolas... [more]
K0TIP2_THAOC3.850e-2170.91Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S0FMR8_9STRA4.300e-2163.64Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2R4V8_9STRA2.490e-2066.07Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0SWF2_9STRA3.070e-2070.91Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A2P4X5V2_9STRA4.020e-2067.27ABCF/EF-3b transporter-like protein n=1 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1534contigP-wetherbeei_contig1534:6635..6811 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog159749.K0TIP2
PFAMsABC_tran,ABC_tran_Xtn
Model size177
Max annot lvl2836|Bacillariophyta
KEGG koko:K06158
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.31e-22
EggNOG OGsCOG0488@1|root,KOG0062@2759|Eukaryota,2XAR0@2836|Bacillariophyta
DescriptionABC transporter
Cds size177
COG categoryEJ
BRITEko00000,ko03012
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186052.6846027-CDS-P-wetherbeei_contig1534:6634..68111683186052.6846027-CDS-P-wetherbeei_contig1534:6634..6811Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1534 6635..6811 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1534.2.1prot_P-wetherbeei_contig1534.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1534 6635..6811 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1534.2.1

>prot_P-wetherbeei_contig1534.2.1 ID=prot_P-wetherbeei_contig1534.2.1|Name=mRNA_P-wetherbeei_contig1534.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=59bp
NRVAFAALGFAKPHVVIMDEPTNHLDMDTIDALIEAIRNFKGGVVVVSHD
QHFISQAS*
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mRNA from alignment at P-wetherbeei_contig1534:6635..6811-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1534.2.1 ID=mRNA_P-wetherbeei_contig1534.2.1|Name=mRNA_P-wetherbeei_contig1534.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig1534:6635..6811- (Phaeothamnion wetherbeei SAG_119_79)
AACAGGGTGGCTTTCGCGGCGCTGGGGTTCGCCAAGCCGCACGTGGTTAT AATGGACGAGCCGACGAACCACCTTGACATGGACACCATCGATGCGCTCA TCGAGGCCATCCGCAACTTCAAGGGCGGCGTTGTCGTCGTCTCCCACGAC CAGCACTTCATCAGCCAGGCGAGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1534:6635..6811-

>mRNA_P-wetherbeei_contig1534.2.1 ID=mRNA_P-wetherbeei_contig1534.2.1|Name=mRNA_P-wetherbeei_contig1534.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=177bp|location=Sequence derived from alignment at P-wetherbeei_contig1534:6635..6811- (Phaeothamnion wetherbeei SAG_119_79)
AACAGGGTGGCTTTCGCGGCGCTGGGGTTCGCCAAGCCGCACGTGGTTAT
AATGGACGAGCCGACGAACCACCTTGACATGGACACCATCGATGCGCTCA
TCGAGGCCATCCGCAACTTCAAGGGCGGCGTTGTCGTCGTCTCCCACGAC
CAGCACTTCATCAGCCAGGCGAGTTGA
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