mRNA_P-wetherbeei_contig1533.2.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1533.2.4
Unique NamemRNA_P-wetherbeei_contig1533.2.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1533.2.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1533contigP-wetherbeei_contig1533:2439..5868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2715
Hectar predicted targeting categorysignal peptide
Exons4
Cds size2703
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186052.4956377-UTR-P-wetherbeei_contig1533:2438..24501683186052.4956377-UTR-P-wetherbeei_contig1533:2438..2450Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1533 2439..2450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186052.5072246-CDS-P-wetherbeei_contig1533:2450..30291683186052.5072246-CDS-P-wetherbeei_contig1533:2450..3029Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1533 2451..3029 +
1683186052.5178225-CDS-P-wetherbeei_contig1533:3320..37131683186052.5178225-CDS-P-wetherbeei_contig1533:3320..3713Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1533 3321..3713 +
1683186052.5337336-CDS-P-wetherbeei_contig1533:3963..52371683186052.5337336-CDS-P-wetherbeei_contig1533:3963..5237Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1533 3964..5237 +
1683186052.5433915-CDS-P-wetherbeei_contig1533:5411..58681683186052.5433915-CDS-P-wetherbeei_contig1533:5411..5868Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1533 5412..5868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1533.2.4prot_P-wetherbeei_contig1533.2.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1533 2451..5868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1533.2.4

>prot_P-wetherbeei_contig1533.2.4 ID=prot_P-wetherbeei_contig1533.2.4|Name=mRNA_P-wetherbeei_contig1533.2.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=901bp
MTRVLVLVYLWARASAKGHDTPPSVSGTVAAIQSLPSNYIAQLPVNKDLY
GVLSSRMIETAAAKSEANRASNVATAAVVAKPTTVGILKASPFPSNPYPG
PDPSPISLLLPSNPIARCLIASLRQPSAPSSHVPCQANFSVYQELCVQPA
FLGTITNSNRTDNHSEAVALPSFTGVITYAYDVGVTAYTRQIDGVDSFVT
LSATAFDGVLDLKNWSKRIVAPKTPCMAALDDATALDAAYFDPETDATRF
WGTEVSSGTLSLAASVLAYNFSSYVSESFFLLDSDRFGSDVISSARQYRR
KAIFASMDEDLAQSLATLKRLYDDDNSLCAADALQPRECVARYPDKFNTT
EDGIEAALYEFVQKNTSCNVPSPWSLSGDLTQHRFLDTTLFPCGSTDRGV
ECAYGDPRVADALLAAIADANAVASTVEEQIAAMAGGVDEVIGAMAAGQA
HTAGVPFVQTAVLPIPGAPSSQSIFEAWDGSAEELSASNAAIALEWPSGV
GELLLEDRAAATSILTDDVQNELVPEIGGDACDATVNFLTILFLALAAFY
GAVGGVEGACDAIDVRVRGRRREREDEQEAAQVAPGVAMVAVPPRSNAAS
VAASPTGLRLRSDHGAALGSAARGSAALGSATPVDEEITRSPTRAGSSEH
KCDADGAAVTPRGRAVPADTEAPEAELLPDDDDEGGARVRCGSERLRRWG
CLESSVLSHTHPFCNYVVWLLLLGSATFWAPFAALFVQMRYEIAARDYSQ
EVTGLFLREYRGAGAFNSYALVSAVSLTTACDSNEAKWSIALVILTAFAI
VLMQWRAIAVLLRALLWHWPCNVAAKVSCRPAAGEQALTLQNSLLRRNGG
RFLASSAHRGCRFALGPPLARDAYLSLCSHRLSPLSGVRRHCRVLGCHDR
*
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mRNA from alignment at P-wetherbeei_contig1533:2439..5868+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1533.2.4 ID=mRNA_P-wetherbeei_contig1533.2.4|Name=mRNA_P-wetherbeei_contig1533.2.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3430bp|location=Sequence derived from alignment at P-wetherbeei_contig1533:2439..5868+ (Phaeothamnion wetherbeei SAG_119_79)
AGGAACTTCACGATGACGCGCGTACTCGTTCTCGTTTATTTATGGGCGAG
GGCGTCGGCGAAAGGACATGACACTCCACCCTCTGTCTCTGGTACTGTGG
CGGCAATACAGTCCCTGCCCAGCAATTACATCGCGCAGCTCCCCGTCAAC
AAGGACTTATACGGTGTGCTCAGCTCCCGCATGATTGAGACCGCCGCGGC
CAAGTCAGAGGCAAATCGGGCCTCAAATGTGGCAACCGCCGCTGTCGTTG
CGAAACCTACGACCGTCGGCATCCTGAAGGCGAGCCCCTTTCCCTCAAAC
CCCTACCCGGGGCCCGACCCTTCGCCGATTTCCCTCCTCTTGCCCTCCAA
CCCCATCGCTCGCTGCCTCATAGCCTCATTGAGGCAGCCCTCTGCCCCAT
CCTCTCACGTGCCCTGCCAGGCAAACTTCTCGGTCTACCAGGAACTCTGC
GTCCAGCCCGCTTTTCTCGGCACCATCACCAACAGCAACCGCACCGATAA
TCACAGCGAGGCAGTGGCGCTGCCGTCCTTCACCGGCGTCATCACGTACG
CCTACGACGTCGGAGTAACCGCGTACACCCGGCAGATTGACGTGAGGAAA
ACCCGGAACTTTCTTGGCCCTTGGAACAGCGGCGATCATTCTTCCTGGAA
TGAGTCTACCTATGCCTATCGCTTTCACTTCTAGTACTCGATAAGGAAAT
GGTGTAACGCTGAAGCTGATCCTTTCGTTCTCGGTTACATTCATTTCTTT
CGCTCTCCAAGTGACATGCTCACGCGACAGCCTTCCTTCCTCCCTCTTCC
TCCTTCTACTTTGTCCGGGCGTTGGCGCCGCTCCACTGCCGCCGCTGCTC
ACTCCACCGCCACCAACCGCCCCTGCCGCCAGGGAGTCGACTCGTTCGTG
ACGCTCAGCGCTACTGCCTTTGACGGTGTTCTGGATTTGAAGAACTGGTC
GAAGCGCATCGTGGCGCCCAAGACGCCGTGCATGGCGGCCCTGGACGACG
CGACGGCGCTGGACGCGGCCTACTTCGACCCGGAGACCGACGCCACGCGA
TTCTGGGGCACCGAGGTCTCTTCCGGGACCTTGAGCCTGGCGGCATCCGT
TCTCGCGTACAACTTCAGCTCTTACGTGTCAGAGAGCTTCTTCTTGCTGG
ACTCGGACCGCTTCGGCAGCGACGTGATCTCGTCGGCCCGCCAATACCGA
AGGAAGGCCATCTTTGCGTCGATGGACGAGGACCTCGCTCAGTCCCTCGC
AACGCTCAAGCGGTTGTACGATGACGTGAGTGATAGAGTTCCTTTCGAGG
GCACTTGCTTTGTCGCTTTGTATCTTGTTCCCTTCGCGAGGGTCGAGTGC
GACGCGAGAAAAGATGCGAGTATGGAGGCTCATTCTTAATTCCCTCTCCT
TTTCATGCGGGGCATGCCTCGGCTGAACGCATGCCTCGTGTTCATGTGCC
CGGAGTGATGGCAGTCTGGTTGCCACTGGTGCCTCACAGCTCTTCTGGCC
GCCGCGTTCTCCTGCCTTTGCTCAGGACAACAGCCTGTGCGCAGCAGACG
CCTTGCAGCCCAGAGAGTGTGTCGCACGATACCCGGACAAGTTCAACACG
ACCGAGGACGGCATCGAGGCTGCGCTCTACGAGTTCGTGCAGAAGAACAC
GTCGTGCAACGTCCCCTCGCCCTGGAGTTTGAGTGGCGACCTCACGCAGC
ACCGCTTCCTCGACACGACGCTCTTCCCGTGCGGCTCGACGGATCGGGGC
GTGGAATGCGCGTACGGCGACCCGCGGGTGGCCGACGCCCTCCTGGCAGC
CATCGCCGACGCCAACGCCGTCGCCAGCACCGTCGAGGAGCAAATTGCTG
CCATGGCCGGCGGCGTCGATGAGGTAATCGGTGCCATGGCGGCCGGCCAA
GCGCACACGGCAGGCGTCCCCTTCGTCCAGACGGCCGTGCTGCCAATCCC
TGGGGCGCCCTCCAGCCAGTCCATCTTCGAGGCCTGGGACGGCTCGGCAG
AGGAGCTTTCGGCATCCAACGCCGCCATCGCGCTCGAGTGGCCATCGGGC
GTGGGCGAGCTACTTCTCGAGGACCGGGCCGCTGCCACCAGCATTCTCAC
GGACGACGTGCAGAACGAGCTGGTGCCGGAGATCGGCGGCGACGCCTGCG
ACGCTACGGTGAATTTCCTGACGATTCTGTTCCTGGCGCTGGCGGCTTTC
TACGGTGCCGTGGGCGGCGTGGAGGGCGCCTGCGACGCCATCGACGTCCG
CGTCCGCGGGCGGCGCCGTGAACGTGAAGATGAACAAGAAGCTGCGCAGG
TGGCTCCGGGGGTGGCGATGGTCGCCGTCCCCCCAAGATCGAATGCTGCC
TCAGTGGCGGCTTCGCCGACGGGCTTGCGCCTCCGTTCGGACCACGGTGC
CGCCCTTGGCAGCGCCGCCCGTGGCAGCGCCGCCCTTGGCAGCGCCACCC
CGGTCGATGAGGAGATCACCCGGTCGCCGACCCGGGCTGGCAGCTCGGAA
CACAAATGCGACGCCGACGGTGCGGCTGTGACCCCCCGGGGCCGCGCCGT
GCCCGCCGACACGGAAGCGCCCGAGGCGGAGCTGCTGCCGGACGACGACG
ACGAGGGCGGCGCGCGGGTGCGGTGCGGCTCGGAGCGGTTGCGGCGCTGG
GGCTGCCTCGAATCCAGCGTGCTCTCGCACACGCACCCCTTCTGCAACTA
CGTGGTGTGGCTTCTTCTCCTCGGCTCTGCCACATTTTGGGCACCTTTCG
CGGCGCTCTTTGTGCAGATGCGCTACGAGATCGCCGCCAGGGACTACAGG
TGAGCGAGCGAGCGAGCGAGCAAGCTTCTTGGGAATACATGGACTGACTT
TCCCTTGAGTTGAATGCGGGCGGTGTGCACCAGGTCACCCCAGACACCCG
TTCTGTTTCTTAGGCACCCTTCCCTCCTTGCCCGCCGCCGTCTTCCGCAC
CCAAAACCTTGGAACTTGAACAGCCAGGAAGTAACGGGCCTCTTCCTCCG
CGAGTACCGCGGCGCTGGGGCCTTCAACTCGTACGCGCTCGTCTCGGCCG
TCTCGCTGACCACGGCCTGCGACTCGAACGAAGCCAAGTGGTCCATCGCT
CTGGTGATACTAACGGCCTTCGCCATCGTGCTCATGCAGTGGAGAGCCAT
TGCCGTGCTCTTGCGCGCCCTCCTCTGGCACTGGCCGTGCAACGTCGCGG
CCAAGGTGAGCTGCCGGCCAGCCGCCGGGGAGCAAGCGCTCACGCTGCAG
AACAGCCTGCTTAGAAGAAACGGCGGACGTTTCCTTGCGAGCTCTGCTCA
TCGAGGGTGCCGGTTTGCTCTGGGGCCGCCTCTCGCTCGGGACGCTTATC
TCTCGCTGTGCTCACATCGCCTTTCCCCGCTGTCAGGTGTGCGGCGGCAC
TGTCGAGTACTCGGCTGCCACGATCGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1533:2439..5868+

>mRNA_P-wetherbeei_contig1533.2.4 ID=mRNA_P-wetherbeei_contig1533.2.4|Name=mRNA_P-wetherbeei_contig1533.2.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2703bp|location=Sequence derived from alignment at P-wetherbeei_contig1533:2439..5868+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCGCGTACTCGTTCTCGTTTATTTATGGGCGAGGGCGTCGGCGAA
AGGACATGACACTCCACCCTCTGTCTCTGGTACTGTGGCGGCAATACAGT
CCCTGCCCAGCAATTACATCGCGCAGCTCCCCGTCAACAAGGACTTATAC
GGTGTGCTCAGCTCCCGCATGATTGAGACCGCCGCGGCCAAGTCAGAGGC
AAATCGGGCCTCAAATGTGGCAACCGCCGCTGTCGTTGCGAAACCTACGA
CCGTCGGCATCCTGAAGGCGAGCCCCTTTCCCTCAAACCCCTACCCGGGG
CCCGACCCTTCGCCGATTTCCCTCCTCTTGCCCTCCAACCCCATCGCTCG
CTGCCTCATAGCCTCATTGAGGCAGCCCTCTGCCCCATCCTCTCACGTGC
CCTGCCAGGCAAACTTCTCGGTCTACCAGGAACTCTGCGTCCAGCCCGCT
TTTCTCGGCACCATCACCAACAGCAACCGCACCGATAATCACAGCGAGGC
AGTGGCGCTGCCGTCCTTCACCGGCGTCATCACGTACGCCTACGACGTCG
GAGTAACCGCGTACACCCGGCAGATTGACGGAGTCGACTCGTTCGTGACG
CTCAGCGCTACTGCCTTTGACGGTGTTCTGGATTTGAAGAACTGGTCGAA
GCGCATCGTGGCGCCCAAGACGCCGTGCATGGCGGCCCTGGACGACGCGA
CGGCGCTGGACGCGGCCTACTTCGACCCGGAGACCGACGCCACGCGATTC
TGGGGCACCGAGGTCTCTTCCGGGACCTTGAGCCTGGCGGCATCCGTTCT
CGCGTACAACTTCAGCTCTTACGTGTCAGAGAGCTTCTTCTTGCTGGACT
CGGACCGCTTCGGCAGCGACGTGATCTCGTCGGCCCGCCAATACCGAAGG
AAGGCCATCTTTGCGTCGATGGACGAGGACCTCGCTCAGTCCCTCGCAAC
GCTCAAGCGGTTGTACGATGACGACAACAGCCTGTGCGCAGCAGACGCCT
TGCAGCCCAGAGAGTGTGTCGCACGATACCCGGACAAGTTCAACACGACC
GAGGACGGCATCGAGGCTGCGCTCTACGAGTTCGTGCAGAAGAACACGTC
GTGCAACGTCCCCTCGCCCTGGAGTTTGAGTGGCGACCTCACGCAGCACC
GCTTCCTCGACACGACGCTCTTCCCGTGCGGCTCGACGGATCGGGGCGTG
GAATGCGCGTACGGCGACCCGCGGGTGGCCGACGCCCTCCTGGCAGCCAT
CGCCGACGCCAACGCCGTCGCCAGCACCGTCGAGGAGCAAATTGCTGCCA
TGGCCGGCGGCGTCGATGAGGTAATCGGTGCCATGGCGGCCGGCCAAGCG
CACACGGCAGGCGTCCCCTTCGTCCAGACGGCCGTGCTGCCAATCCCTGG
GGCGCCCTCCAGCCAGTCCATCTTCGAGGCCTGGGACGGCTCGGCAGAGG
AGCTTTCGGCATCCAACGCCGCCATCGCGCTCGAGTGGCCATCGGGCGTG
GGCGAGCTACTTCTCGAGGACCGGGCCGCTGCCACCAGCATTCTCACGGA
CGACGTGCAGAACGAGCTGGTGCCGGAGATCGGCGGCGACGCCTGCGACG
CTACGGTGAATTTCCTGACGATTCTGTTCCTGGCGCTGGCGGCTTTCTAC
GGTGCCGTGGGCGGCGTGGAGGGCGCCTGCGACGCCATCGACGTCCGCGT
CCGCGGGCGGCGCCGTGAACGTGAAGATGAACAAGAAGCTGCGCAGGTGG
CTCCGGGGGTGGCGATGGTCGCCGTCCCCCCAAGATCGAATGCTGCCTCA
GTGGCGGCTTCGCCGACGGGCTTGCGCCTCCGTTCGGACCACGGTGCCGC
CCTTGGCAGCGCCGCCCGTGGCAGCGCCGCCCTTGGCAGCGCCACCCCGG
TCGATGAGGAGATCACCCGGTCGCCGACCCGGGCTGGCAGCTCGGAACAC
AAATGCGACGCCGACGGTGCGGCTGTGACCCCCCGGGGCCGCGCCGTGCC
CGCCGACACGGAAGCGCCCGAGGCGGAGCTGCTGCCGGACGACGACGACG
AGGGCGGCGCGCGGGTGCGGTGCGGCTCGGAGCGGTTGCGGCGCTGGGGC
TGCCTCGAATCCAGCGTGCTCTCGCACACGCACCCCTTCTGCAACTACGT
GGTGTGGCTTCTTCTCCTCGGCTCTGCCACATTTTGGGCACCTTTCGCGG
CGCTCTTTGTGCAGATGCGCTACGAGATCGCCGCCAGGGACTACAGCCAG
GAAGTAACGGGCCTCTTCCTCCGCGAGTACCGCGGCGCTGGGGCCTTCAA
CTCGTACGCGCTCGTCTCGGCCGTCTCGCTGACCACGGCCTGCGACTCGA
ACGAAGCCAAGTGGTCCATCGCTCTGGTGATACTAACGGCCTTCGCCATC
GTGCTCATGCAGTGGAGAGCCATTGCCGTGCTCTTGCGCGCCCTCCTCTG
GCACTGGCCGTGCAACGTCGCGGCCAAGGTGAGCTGCCGGCCAGCCGCCG
GGGAGCAAGCGCTCACGCTGCAGAACAGCCTGCTTAGAAGAAACGGCGGA
CGTTTCCTTGCGAGCTCTGCTCATCGAGGGTGCCGGTTTGCTCTGGGGCC
GCCTCTCGCTCGGGACGCTTATCTCTCGCTGTGCTCACATCGCCTTTCCC
CGCTGTCAGGTGTGCGGCGGCACTGTCGAGTACTCGGCTGCCACGATCGA
TGA
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