mRNA_P-wetherbeei_contig153.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig153.7.1
Unique NamemRNA_P-wetherbeei_contig153.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig153.7.1 vs. uniprot
Match: A0A3C0TV44_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TV44_9PROT)

HSP 1 Score: 208 bits (530), Expect = 7.680e-66
Identity = 111/181 (61.33%), Postives = 138/181 (76.24%), Query Frame = 1 
Query:    1 MQDFMTAPQEIADIAIALSAKHGAAAQNVAAQMLAESVSANNLVEYQKWLGVRRYILENGDIKRYTRRLSDKLIWAIEQALETDLPQLAAVLGVVAEEARRAEQNAAADIRAPGGSKRPPMDGGLDPDPPEYTRRLSDKLIWALQQSVDQGKLEIAAMLKPLYEVASEGDAARAAAFKNRS 543
            M   + +  EI D A+ L  K+GA+AQNVAA+ L  +  AN+L E +KWL +RR +  N D+ RYTRRLSDKLIWAIEQ+ E +LP LA VLGV+A EA++AE +A+AD+R   G    P+DGG +PD PEYTRRLSDKLIWAL QSVDQGK++IAA LKP+YEV +EGDAARAAA+ NRS
Sbjct:    1 MPQDLASEHEIHDAAMTLFRKYGASAQNVAARELVSAAMANDLGECKKWLEIRRALFRNKDVNRYTRRLSDKLIWAIEQSFEMNLPHLATVLGVIAAEAQQAETHASADLRHLAGGGAQPLDGGANPDMPEYTRRLSDKLIWALSQSVDQGKMDIAARLKPIYEVTAEGDAARAAAYVNRS 181
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig153.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3C0TV44_9PROT7.680e-6661.33Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig153contigP-wetherbeei_contig153:8591..9136 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size546
Hectar predicted targeting categoryother localisation
Exons1
Cds size546
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186051.6734881-CDS-P-wetherbeei_contig153:8590..91361683186051.6734881-CDS-P-wetherbeei_contig153:8590..9136Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig153 8591..9136 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig153.7.1prot_P-wetherbeei_contig153.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig153 8591..9136 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig153.7.1

>prot_P-wetherbeei_contig153.7.1 ID=prot_P-wetherbeei_contig153.7.1|Name=mRNA_P-wetherbeei_contig153.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=182bp
MQDFMTAPQEIADIAIALSAKHGAAAQNVAAQMLAESVSANNLVEYQKWL
GVRRYILENGDIKRYTRRLSDKLIWAIEQALETDLPQLAAVLGVVAEEAR
RAEQNAAADIRAPGGSKRPPMDGGLDPDPPEYTRRLSDKLIWALQQSVDQ
GKLEIAAMLKPLYEVASEGDAARAAAFKNRS*
back to top

mRNA from alignment at P-wetherbeei_contig153:8591..9136+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig153.7.1 ID=mRNA_P-wetherbeei_contig153.7.1|Name=mRNA_P-wetherbeei_contig153.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig153:8591..9136+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGATTTTATGACCGCACCACAGGAAATAGCCGATATCGCTATCGC
TCTTAGCGCAAAGCACGGCGCCGCCGCGCAAAATGTGGCGGCCCAGATGC
TGGCCGAATCAGTCTCGGCGAATAATCTGGTTGAATATCAGAAGTGGCTG
GGCGTGCGGCGGTATATTCTGGAAAATGGCGATATAAAACGATACACACG
CCGTCTTTCCGACAAATTGATCTGGGCGATTGAACAGGCTTTGGAAACGG
ATTTGCCGCAACTGGCCGCCGTGCTGGGCGTAGTCGCAGAAGAAGCGCGC
CGCGCGGAGCAAAACGCCGCAGCGGATATTCGCGCGCCGGGCGGCAGCAA
GCGGCCCCCTATGGATGGCGGGCTAGACCCCGATCCGCCCGAATATACCC
GCCGCCTGAGCGATAAGTTAATCTGGGCCCTGCAACAATCGGTTGATCAG
GGCAAGCTTGAAATCGCCGCCATGCTGAAGCCGCTTTATGAAGTCGCATC
GGAAGGGGACGCCGCCAGAGCGGCGGCATTTAAAAACCGCAGTTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig153:8591..9136+

>mRNA_P-wetherbeei_contig153.7.1 ID=mRNA_P-wetherbeei_contig153.7.1|Name=mRNA_P-wetherbeei_contig153.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=546bp|location=Sequence derived from alignment at P-wetherbeei_contig153:8591..9136+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGATTTTATGACCGCACCACAGGAAATAGCCGATATCGCTATCGC
TCTTAGCGCAAAGCACGGCGCCGCCGCGCAAAATGTGGCGGCCCAGATGC
TGGCCGAATCAGTCTCGGCGAATAATCTGGTTGAATATCAGAAGTGGCTG
GGCGTGCGGCGGTATATTCTGGAAAATGGCGATATAAAACGATACACACG
CCGTCTTTCCGACAAATTGATCTGGGCGATTGAACAGGCTTTGGAAACGG
ATTTGCCGCAACTGGCCGCCGTGCTGGGCGTAGTCGCAGAAGAAGCGCGC
CGCGCGGAGCAAAACGCCGCAGCGGATATTCGCGCGCCGGGCGGCAGCAA
GCGGCCCCCTATGGATGGCGGGCTAGACCCCGATCCGCCCGAATATACCC
GCCGCCTGAGCGATAAGTTAATCTGGGCCCTGCAACAATCGGTTGATCAG
GGCAAGCTTGAAATCGCCGCCATGCTGAAGCCGCTTTATGAAGTCGCATC
GGAAGGGGACGCCGCCAGAGCGGCGGCATTTAAAAACCGCAGTTAG
back to top