mRNA_P-wetherbeei_contig15295.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15295.1.1
Unique NamemRNA_P-wetherbeei_contig15295.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15295.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15295contigP-wetherbeei_contig15295:240..1625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1100
Hectar predicted targeting categoryother localisation
Exons3
Cds size801
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186051.323654-UTR-P-wetherbeei_contig15295:239..3801683186051.323654-UTR-P-wetherbeei_contig15295:239..380Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15295 240..380 +
1683186051.3655295-UTR-P-wetherbeei_contig15295:1467..16251683186051.3655295-UTR-P-wetherbeei_contig15295:1467..1625Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15295 1468..1625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186051.334058-CDS-P-wetherbeei_contig15295:380..7401683186051.334058-CDS-P-wetherbeei_contig15295:380..740Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15295 381..740 +
1683186051.3460171-CDS-P-wetherbeei_contig15295:839..10821683186051.3460171-CDS-P-wetherbeei_contig15295:839..1082Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15295 840..1082 +
1683186051.3557656-CDS-P-wetherbeei_contig15295:1269..14671683186051.3557656-CDS-P-wetherbeei_contig15295:1269..1467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15295 1270..1467 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15295.1.1prot_P-wetherbeei_contig15295.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15295 381..1467 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15295.1.1

>prot_P-wetherbeei_contig15295.1.1 ID=prot_P-wetherbeei_contig15295.1.1|Name=mRNA_P-wetherbeei_contig15295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
MAHVATPEKEHNTNDSSFASSKLQEGNGEKENSVISPRGLFSGARRIKRT
PRVQQAAPDTPSRLYESTTASRACQWKKDGNSRAKSPRPRAAASAPSPGL
GRNRVQGLGLPLPAKMQSTKGSAKAVYDNGCCDDVQSSDRGAGVGGCGGC
SSRRDSAGDYCHGGDSGSPLRLPLAPSDSRPASLTTEPTINAETETPKLA
TEEKGRPAVPQHLSRFLEGRPGREEAAATAATVVTAVLAAAAAAAKPAKA
AAEAQAKAVAVRISKR*
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mRNA from alignment at P-wetherbeei_contig15295:240..1625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15295.1.1 ID=mRNA_P-wetherbeei_contig15295.1.1|Name=mRNA_P-wetherbeei_contig15295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1386bp|location=Sequence derived from alignment at P-wetherbeei_contig15295:240..1625+ (Phaeothamnion wetherbeei SAG_119_79)
CTTCCTTTCTTTCTTTTCCACAACGGCATATTCCCTTCTTGCGTTAACCT
CTACCTCGCGCCTGTTCAGAACGTGCGGTCCCTCTCGCCACCTTTTCTTT
GGCTCGCCCCCACTTCGAAACTCAAATTTCGAGCTCGAGGCATGGCGCAT
GTCGCTACTCCGGAGAAGGAGCATAATACCAATGACTCGTCATTCGCAAG
CAGCAAACTGCAGGAAGGCAATGGCGAGAAAGAAAACTCCGTTATTTCTC
CTCGAGGTCTTTTCTCAGGAGCGCGACGCATCAAACGCACTCCAAGAGTA
CAACAAGCTGCTCCCGACACGCCTTCGCGTTTGTATGAATCAACGACAGC
GAGCCGCGCATGCCAATGGAAGAAGGACGGCAACTCGCGAGCCAAATCAC
CGCGCCCGAGGGCTGCGGCCTCTGCGCCTTCTCCTGGACTGGGAAGGAAT
CGTGTTCAGGGCTTGGGATTGCCCCTACCCGCAAAGATGCAGTCTACCAA
GGTGAGAAGTATTCTGCTTTTAATCCCCGGCCTTGTGTGCAGGAAGCGTT
GACACAAACCCTCGATCGCTCATCCTTGGTGCACTTCACTTTCCCGGCAG
GGAAGCGCCAAAGCTGTTTATGATAACGGCTGCTGCGACGACGTGCAATC
TTCGGACAGAGGCGCGGGCGTCGGCGGCTGTGGAGGTTGCAGCAGCCGCC
GCGACAGCGCTGGTGATTACTGTCACGGCGGCGACTCCGGCTCACCGCTG
CGGCTGCCGCTCGCGCCCTCGGATTCCCGGCCTGCATCGCTGACGACGGA
ACCAACGATCAACGCAGAAACGGAGACCCCGAAACTGGCGACGGTAAGGG
GGGGGGGATAAGCAGTGGAAGCAAGTGGTCTTTCGGCGAGAGTGTATCTG
TCACCTCAAAGTTCACAGCTAGCCATTTTTTCTCAAGGAAGCAGATTTAT
GCTGAAGTATAGTTTCTATTATTAATTGTTACCCTTACCTTTCTTCCGTC
TTCCATGCCAAAACGATCTTTGAGTGGCAGGAAGAAAAGGGGCGTCCGGC
GGTACCGCAGCACCTGTCCCGCTTCCTGGAAGGCCGACCCGGACGGGAGG
AGGCAGCGGCAACGGCGGCGACGGTGGTGACGGCGGTGCTAGCAGCAGCG
GCGGCGGCGGCAAAACCGGCAAAGGCAGCGGCAGAGGCGCAGGCGAAAGC
TGTTGCGGTGCGAATCTCGAAGCGATAGAAACGGCAGCGTGCTGCACCGC
AGAAGAATGGTGATCTTGTGTCTGACCTTGTTATTCGGTTTCCCACAAAC
CTGGAGACATCTAGGTGGATCCGACGAAAAGATGTCATCGCCGTCCCTCA
CGCTCATAAGAAAGGACACAGGTGGCCATACCCCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15295:240..1625+

>mRNA_P-wetherbeei_contig15295.1.1 ID=mRNA_P-wetherbeei_contig15295.1.1|Name=mRNA_P-wetherbeei_contig15295.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig15295:240..1625+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCATGTCGCTACTCCGGAGAAGGAGCATAATACCAATGACTCGTC
ATTCGCAAGCAGCAAACTGCAGGAAGGCAATGGCGAGAAAGAAAACTCCG
TTATTTCTCCTCGAGGTCTTTTCTCAGGAGCGCGACGCATCAAACGCACT
CCAAGAGTACAACAAGCTGCTCCCGACACGCCTTCGCGTTTGTATGAATC
AACGACAGCGAGCCGCGCATGCCAATGGAAGAAGGACGGCAACTCGCGAG
CCAAATCACCGCGCCCGAGGGCTGCGGCCTCTGCGCCTTCTCCTGGACTG
GGAAGGAATCGTGTTCAGGGCTTGGGATTGCCCCTACCCGCAAAGATGCA
GTCTACCAAGGGAAGCGCCAAAGCTGTTTATGATAACGGCTGCTGCGACG
ACGTGCAATCTTCGGACAGAGGCGCGGGCGTCGGCGGCTGTGGAGGTTGC
AGCAGCCGCCGCGACAGCGCTGGTGATTACTGTCACGGCGGCGACTCCGG
CTCACCGCTGCGGCTGCCGCTCGCGCCCTCGGATTCCCGGCCTGCATCGC
TGACGACGGAACCAACGATCAACGCAGAAACGGAGACCCCGAAACTGGCG
ACGGAAGAAAAGGGGCGTCCGGCGGTACCGCAGCACCTGTCCCGCTTCCT
GGAAGGCCGACCCGGACGGGAGGAGGCAGCGGCAACGGCGGCGACGGTGG
TGACGGCGGTGCTAGCAGCAGCGGCGGCGGCGGCAAAACCGGCAAAGGCA
GCGGCAGAGGCGCAGGCGAAAGCTGTTGCGGTGCGAATCTCGAAGCGATA
G
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