mRNA_P-wetherbeei_contig15260.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15260.2.1
Unique NamemRNA_P-wetherbeei_contig15260.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15260.2.1 vs. uniprot
Match: A0A7C2QQ69_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QQ69_9HYPH)

HSP 1 Score: 82.8 bits (203), Expect = 5.370e-19
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    1 MLAFFAILASALCGYAQATPMTWPVAALALASVSWAQSYTVIRRGLEVESDEVVWDTLTKSLMNAIVTTGACYWVGVLFRYLSGL 255
            M AF  I  + LCGY +A+ + WP  AL+L  +SWA+ Y + RR  E+   EVV   L +S +NA+ +TGACYW GV  R+LSGL
Sbjct:    1 MAAFLVIFIAGLCGYFRASLLAWPAMALSLLLLSWAEHYLLARRTAEIGFAEVVQGALLRSSINALASTGACYWSGVAIRHLSGL 85
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BLAST of mRNA_P-wetherbeei_contig15260.2.1 vs. uniprot
Match: UPI001114AAE8 (hypothetical protein n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI001114AAE8)

HSP 1 Score: 52.8 bits (125), Expect = 3.370e-7
Identity = 29/82 (35.37%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:    1 MLAFFAILASALCGYAQATPMTWPVAALALASVSWAQSYTVIRRGLEVESDEVVWDTLTKSLMNAIVTTGACYWVGVLFRYL 246
            ML F AI A+++ GYA     T    A+ALAS S+A+ YT+ +RG E+   + +   + +S  N ++  GA Y+ G   R +
Sbjct:    1 MLGFLAIFAASVAGYADVGLWTIAACAIALASASYAEHYTLYKRGQELGLTDTLRGAVLRSFGNGLIAAGAAYFCGWFLRLI 82
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15260.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7C2QQ69_9HYPH5.370e-1948.24Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
UPI001114AAE83.370e-735.37hypothetical protein n=1 Tax=Hyphomicrobium sp. CS... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15260contigP-wetherbeei_contig15260:1321..1578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size258
Hectar predicted targeting categorysignal peptide
Exons1
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186050.1706812-CDS-P-wetherbeei_contig15260:1320..15781683186050.1706812-CDS-P-wetherbeei_contig15260:1320..1578Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15260 1321..1578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15260.2.1prot_P-wetherbeei_contig15260.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15260 1321..1578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15260.2.1

>prot_P-wetherbeei_contig15260.2.1 ID=prot_P-wetherbeei_contig15260.2.1|Name=mRNA_P-wetherbeei_contig15260.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MLAFFAILASALCGYAQATPMTWPVAALALASVSWAQSYTVIRRGLEVES
DEVVWDTLTKSLMNAIVTTGACYWVGVLFRYLSGL*
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mRNA from alignment at P-wetherbeei_contig15260:1321..1578-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15260.2.1 ID=mRNA_P-wetherbeei_contig15260.2.1|Name=mRNA_P-wetherbeei_contig15260.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig15260:1321..1578- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGCCTTCTTCGCAATCCTGGCGTCGGCTCTTTGCGGATACGCACA
GGCCACTCCGATGACGTGGCCCGTAGCCGCGTTGGCATTGGCGTCTGTCT
CATGGGCGCAAAGCTACACTGTAATCCGTAGGGGCCTAGAAGTAGAGTCT
GACGAAGTAGTTTGGGATACTCTGACCAAGAGCCTTATGAACGCGATCGT
GACAACTGGAGCATGCTACTGGGTTGGTGTTCTTTTTCGTTACTTGTCCG
GGCTGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15260:1321..1578-

>mRNA_P-wetherbeei_contig15260.2.1 ID=mRNA_P-wetherbeei_contig15260.2.1|Name=mRNA_P-wetherbeei_contig15260.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig15260:1321..1578- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGCCTTCTTCGCAATCCTGGCGTCGGCTCTTTGCGGATACGCACA
GGCCACTCCGATGACGTGGCCCGTAGCCGCGTTGGCATTGGCGTCTGTCT
CATGGGCGCAAAGCTACACTGTAATCCGTAGGGGCCTAGAAGTAGAGTCT
GACGAAGTAGTTTGGGATACTCTGACCAAGAGCCTTATGAACGCGATCGT
GACAACTGGAGCATGCTACTGGGTTGGTGTTCTTTTTCGTTACTTGTCCG
GGCTGTAG
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