mRNA_P-wetherbeei_contig15258.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15258.1.1
Unique NamemRNA_P-wetherbeei_contig15258.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15258.1.1 vs. uniprot
Match: A0A6N7GWF3_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GWF3_9HYPH)

HSP 1 Score: 103 bits (256), Expect = 3.260e-27
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 MTYRVYSGPPGTEAIPAIEKDRWLYKEFGLMNEALIWARHVNNSGRIALLIEGDDGTRLAKSEIIAALVDPEDVP 225
            M YRVYSGP GTE I  +EKDR LYKEF  +++A+ WARHVN++GR ALLIEGDDGT L  +EI AAL  PE  P
Sbjct:    1 MAYRVYSGPRGTETISPLEKDRMLYKEFSSLDQAMSWARHVNDNGRTALLIEGDDGTHLTHTEITAALTHPERPP 75          
BLAST of mRNA_P-wetherbeei_contig15258.1.1 vs. uniprot
Match: A0A521VUX9_9HYPH (Uncharacterized protein n=1 Tax=Xanthobacteraceae bacterium TaxID=2021379 RepID=A0A521VUX9_9HYPH)

HSP 1 Score: 96.3 bits (238), Expect = 1.910e-24
Identity = 42/72 (58.33%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 MTYRVYSGPPGTEAIPAIEKDRWLYKEFGLMNEALIWARHVNNSGRIALLIEGDDGTRLAKSEIIAALVDPE 216
            M YRVYSGPPG++ +  ++K+R L+KEFG+++EA+ WARHVN+SGR+ LLIEGDDGT +  S+I   L  PE
Sbjct:    1 MVYRVYSGPPGSDYLRPMDKERMLFKEFGMLDEAINWARHVNDSGRVTLLIEGDDGTHITASQINVTLRHPE 72          
BLAST of mRNA_P-wetherbeei_contig15258.1.1 vs. uniprot
Match: A0A537ND67_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537ND67_9PROT)

HSP 1 Score: 92.8 bits (229), Expect = 4.020e-23
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 MTYRVYSGPPGTEAIPAIEKDRWLYKEFGLMNEALIWARHVNNSGRIALLIEGDDGTRLAKSEIIAALVDPEDVPA 228
            M YRVYSGP G+E+   +EKDRWL+KE+  +++AL WA+HV++ G +ALLIEGDDGT L K EI AAL   E  P+
Sbjct:    1 MRYRVYSGPRGSESASPLEKDRWLFKEYAALDDALGWAQHVHDHGGVALLIEGDDGTILNKREIAAALSSGERQPS 76          
BLAST of mRNA_P-wetherbeei_contig15258.1.1 vs. uniprot
Match: A0A6L5FRZ7_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FRZ7_9HYPH)

HSP 1 Score: 92.8 bits (229), Expect = 4.130e-23
Identity = 42/68 (61.76%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 MTYRVYSGPPGTEAIPAIEKDRWLYKEFGLMNEALIWARHVNNSGRIALLIEGDDGTRLAKSEIIAAL 204
            M YRVYSGP GT +I  +EKD+ L+KEFG +++A  WA+HV  +GR+ALLIEGDDGT L K EI  AL
Sbjct:    1 MRYRVYSGPSGTRSISPLEKDKLLFKEFGALDDAFAWAQHVGTTGRVALLIEGDDGTHLTKHEIAGAL 68          
BLAST of mRNA_P-wetherbeei_contig15258.1.1 vs. uniprot
Match: A0A363TK78_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium TaxID=2072420 RepID=A0A363TK78_9BRAD)

HSP 1 Score: 92.4 bits (228), Expect = 5.410e-23
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 MTYRVYSGPPGTEAIPAIEKDRWLYKEFGLMNEALIWARHVNNSGRIALLIEGDDGTRLAKSEIIAAL 204
            M YRVYSGP GTE    ++K++ LYKEF  ++EA+ WARHVN SGR+ALLIEGDDGT L K EI A+L
Sbjct:    1 MGYRVYSGPRGTEMESPMDKEKLLYKEFSQLDEAMGWARHVNGSGRVALLIEGDDGTHLTKREIAASL 68          
BLAST of mRNA_P-wetherbeei_contig15258.1.1 vs. uniprot
Match: A0A345ZS34_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZS34_9HYPH)

HSP 1 Score: 85.5 bits (210), Expect = 3.150e-20
Identity = 40/68 (58.82%), Postives = 51/68 (75.00%), Query Frame = 1
Query:    1 MTYRVYSGPPGTEAIPAIEKDRWLYKEFGLMNEALIWARHVNNSGRIALLIEGDDGTRLAKSEIIAAL 204
            MTYRVYSGPPG+  I  I K + L+K+F  +++AL WARHV  SGR+ LLIEGDDGTR+ + +I  AL
Sbjct:    1 MTYRVYSGPPGSPNISPIAKSQALFKQFSALDDALAWARHVERSGRVPLLIEGDDGTRMDRRDIGNAL 68          
BLAST of mRNA_P-wetherbeei_contig15258.1.1 vs. uniprot
Match: A0A537QDA7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537QDA7_9PROT)

HSP 1 Score: 82.4 bits (202), Expect = 1.130e-18
Identity = 36/59 (61.02%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 MTYRVYSGPPGTEAIPAIEKDRWLYKEFGLMNEALIWARHVNNSGRIALLIEGDDGTRL 177
            M YRVYSGP G+E+   +EKDRWL+KE+  +++AL WA+HV++ G +ALLIEGDDGT L
Sbjct:    1 MRYRVYSGPRGSESASPLEKDRWLFKEYAALDDALGWAQHVHDHGGVALLIEGDDGTIL 59          
BLAST of mRNA_P-wetherbeei_contig15258.1.1 vs. uniprot
Match: A0A371BDR8_9HYPH (Uncharacterized protein n=2 Tax=unclassified Pseudolabrys TaxID=2638514 RepID=A0A371BDR8_9HYPH)

HSP 1 Score: 80.5 bits (197), Expect = 2.920e-18
Identity = 40/68 (58.82%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 MTYRVYSGPPGTEAIPAIEKDRWLYKEFGLMNEALIWARHVNNSGRIALLIEGDDGTRLAKSEIIAAL 204
            MTYRVYSGP G   +  +EK R LYKEF  M+EAL WA H+   GR+AL IEGDDGT L +  I AA+
Sbjct:    1 MTYRVYSGPQGAPDLSPLEKQRVLYKEFMSMDEALWWASHLRKQGRVALSIEGDDGTTLDRRAIGAAI 68          
BLAST of mRNA_P-wetherbeei_contig15258.1.1 vs. uniprot
Match: A0A327JYH0_9HYPH (Uncharacterized protein n=1 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A327JYH0_9HYPH)

HSP 1 Score: 76.6 bits (187), Expect = 8.530e-17
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    7 YRVYSGPPGTEAIPAIEKDRWLYKEFGLMNEALIWARHVNNSGRIALLIEGDDGTRLAKSEIIAAL 204
            YRVYS P G E I  +EKDR L++    M+EA+ WA H++ +G   +LIEGDDGTRLA  EI +AL
Sbjct:    2 YRVYSAPAGAENISPLEKDRLLHRNLATMDEAIGWAAHMSRTGHAVVLIEGDDGTRLAAGEIASAL 67          
BLAST of mRNA_P-wetherbeei_contig15258.1.1 vs. uniprot
Match: A0A0Q7TK94_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TK94_9HYPH)

HSP 1 Score: 76.6 bits (187), Expect = 9.720e-17
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 MTYRVYSGPPGTEAIPAIEKDRWLYKEFGLMNEALIWARHVNNSGRIALLIEGDDGTRLAKSEIIAAL 204
            MTYRVYSGP G      IEK + LYKEF  ++EAL WA H++   R+AL IEGDDGTR+ +  I AA+
Sbjct:    1 MTYRVYSGPKGAPDPSPIEKQKMLYKEFISLDEALWWANHLSRRDRVALSIEGDDGTRMDRRAIGAAI 68          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15258.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6N7GWF3_9HYPH3.260e-2765.33Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A521VUX9_9HYPH1.910e-2458.33Uncharacterized protein n=1 Tax=Xanthobacteraceae ... [more]
A0A537ND67_9PROT4.020e-2357.89Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A6L5FRZ7_9HYPH4.130e-2361.76Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A363TK78_9BRAD5.410e-2364.71Uncharacterized protein n=1 Tax=Bradyrhizobiaceae ... [more]
A0A345ZS34_9HYPH3.150e-2058.82Uncharacterized protein n=1 Tax=Pseudolabrys taiwa... [more]
A0A537QDA7_9PROT1.130e-1861.02Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A371BDR8_9HYPH2.920e-1858.82Uncharacterized protein n=2 Tax=unclassified Pseud... [more]
A0A327JYH0_9HYPH8.530e-1754.55Uncharacterized protein n=1 Tax=Rhodoplanes piscin... [more]
A0A0Q7TK94_9HYPH9.720e-1755.88Uncharacterized protein n=1 Tax=Pseudolabrys sp. R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15258contigP-wetherbeei_contig15258:541..783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size243
Hectar predicted targeting categoryother localisation
Exons1
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186049.9633543-CDS-P-wetherbeei_contig15258:540..7831683186049.9633543-CDS-P-wetherbeei_contig15258:540..783Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15258 541..783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15258.1.1prot_P-wetherbeei_contig15258.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15258 541..783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15258.1.1

>prot_P-wetherbeei_contig15258.1.1 ID=prot_P-wetherbeei_contig15258.1.1|Name=mRNA_P-wetherbeei_contig15258.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
MTYRVYSGPPGTEAIPAIEKDRWLYKEFGLMNEALIWARHVNNSGRIALL
IEGDDGTRLAKSEIIAALVDPEDVPATRRH*
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mRNA from alignment at P-wetherbeei_contig15258:541..783+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15258.1.1 ID=mRNA_P-wetherbeei_contig15258.1.1|Name=mRNA_P-wetherbeei_contig15258.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig15258:541..783+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTTACAGGGTTTACAGCGGCCCGCCCGGCACTGAAGCGATTCCGGC TATCGAGAAGGATCGGTGGCTGTACAAGGAATTCGGCTTGATGAACGAAG CCTTGATCTGGGCGCGCCATGTCAACAACAGCGGCCGGATCGCACTGCTC ATCGAAGGCGACGACGGCACGCGCTTGGCCAAGTCGGAGATCATTGCGGC TCTGGTGGATCCTGAAGACGTGCCTGCCACGCGCCGGCATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15258:541..783+

>mRNA_P-wetherbeei_contig15258.1.1 ID=mRNA_P-wetherbeei_contig15258.1.1|Name=mRNA_P-wetherbeei_contig15258.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig15258:541..783+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACTTACAGGGTTTACAGCGGCCCGCCCGGCACTGAAGCGATTCCGGC
TATCGAGAAGGATCGGTGGCTGTACAAGGAATTCGGCTTGATGAACGAAG
CCTTGATCTGGGCGCGCCATGTCAACAACAGCGGCCGGATCGCACTGCTC
ATCGAAGGCGACGACGGCACGCGCTTGGCCAAGTCGGAGATCATTGCGGC
TCTGGTGGATCCTGAAGACGTGCCTGCCACGCGCCGGCATTAG
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