mRNA_P-wetherbeei_contig15246.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15246.1.2
Unique NamemRNA_P-wetherbeei_contig15246.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15246.1.2 vs. uniprot
Match: D7G3F8_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F8_ECTSI)

HSP 1 Score: 312 bits (799), Expect = 5.030e-95
Identity = 148/180 (82.22%), Postives = 168/180 (93.33%), Query Frame = 1 
Query:  106 RDCLFAPKTICVISRFPIYGVMRRFLRHLYAISLSETQVPLERYISMFVSCIPMPAPGGRNFHVYLEDLENEDPRMSRLKPLNLHMPPYAWLPLMDIDFSAPFRCLSIESVLSIFSLLLQEAKLIFLSSRAELLTQVMEAMRSLIFPLDWQSVYVPRLPYALSGCLECPGGFMIGMHLTK 645
            R C+FAPKTICVISRFPIYGV+RRFLRHLYAISLS + VPLERYISMFVSCIPMP PGG  FHVYLE LEN+DPR SRLKPL+L MPP AWLPLMDIDF+APFRCLS++SVL++F+L+LQEAK++FLSSRAELLTQVMEA+RSL+FP++WQSVYVP+LPYAL+G LECPGGFMIGM LTK
Sbjct:  525 RPCIFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGGCPFHVYLEHLENQDPRRSRLKPLSLQMPPAAWLPLMDIDFAAPFRCLSVQSVLTVFALMLQEAKILFLSSRAELLTQVMEALRSLLFPMEWQSVYVPQLPYALAGYLECPGGFMIGMRLTK 704
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BLAST of mRNA_P-wetherbeei_contig15246.1.2 vs. uniprot
Match: A0A6H5JH16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH16_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 2.630e-94
Identity = 148/180 (82.22%), Postives = 167/180 (92.78%), Query Frame = 1 
Query:  106 RDCLFAPKTICVISRFPIYGVMRRFLRHLYAISLSETQVPLERYISMFVSCIPMPAPGGRNFHVYLEDLENEDPRMSRLKPLNLHMPPYAWLPLMDIDFSAPFRCLSIESVLSIFSLLLQEAKLIFLSSRAELLTQVMEAMRSLIFPLDWQSVYVPRLPYALSGCLECPGGFMIGMHLTK 645
            R C+FAPKTICVISRFPIYGV+RRFLRHLYAISLS + VPLERYISMFVSCIPMP PGG  FHVYLE LEN+DPR SRLKPL L MPP AWLPLMDIDF+APFRCLS++SVL++F+L+LQEAK++FLSSRAELLTQVMEA+RSL+FP++WQSVYVP+LPYAL+G LECPGGFMIGM LTK
Sbjct:  594 RPCIFAPKTICVISRFPIYGVLRRFLRHLYAISLSRSDVPLERYISMFVSCIPMPPPGGCPFHVYLEHLENQDPRRSRLKPLALQMPPAAWLPLMDIDFAAPFRCLSVQSVLTVFALMLQEAKILFLSSRAELLTQVMEALRSLLFPMEWQSVYVPQLPYALAGYLECPGGFMIGMRLTK 773
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BLAST of mRNA_P-wetherbeei_contig15246.1.2 vs. uniprot
Match: A0A4D9CQX3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQX3_9STRA)

HSP 1 Score: 180 bits (457), Expect = 6.120e-49
Identity = 88/183 (48.09%), Postives = 125/183 (68.31%), Query Frame = 1 
Query:   91 PGGGGRDCLFAPKTICVISRFPIYGVMRRFLRHLYAISLSETQVPLERYISMFVSCIPMPAPGGRNFHVYLEDLENEDPRMSRLKPLNLHMPPYAWLPLMDIDFSAPFRCLSIESVLSIFSLLLQEAKLIFLSSRAELLTQVMEAMRSLIFPLDWQSVYVPRLPYALSGCLECPGGFMIGMHL 639
            P G     LFAPK IC+IS +P Y  +R FL+ +Y ISLS ++VPLERYI+ F   +P+P PG    +++L+    +    S L P+ LH+P    LPLMD+D+ APFRCLS+++VL IF LLL E +L+F+SS   LLT+V E + +L+FPL+W S Y+PRLP  L+  L+ PG F+IG+++
Sbjct:  422 PAGRSDHALFAPKCICIISHWPFYRALRSFLQQIYRISLSPSRVPLERYIAYFTHYMPLPPPGQHVLNLHLDLGMQDRIENSTLAPITLHLPDTRSLPLMDLDYEAPFRCLSLDNVLKIFVLLLMEERLLFMSSSTSLLTEVTETILTLLFPLEWTSCYIPRLPNKLTEILDAPGSFLIGIYI 604
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BLAST of mRNA_P-wetherbeei_contig15246.1.2 vs. uniprot
Match: W7T7D8_9STRA (UDENN n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7D8_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.180e-48
Identity = 88/183 (48.09%), Postives = 125/183 (68.31%), Query Frame = 1 
Query:   91 PGGGGRDCLFAPKTICVISRFPIYGVMRRFLRHLYAISLSETQVPLERYISMFVSCIPMPAPGGRNFHVYLEDLENEDPRMSRLKPLNLHMPPYAWLPLMDIDFSAPFRCLSIESVLSIFSLLLQEAKLIFLSSRAELLTQVMEAMRSLIFPLDWQSVYVPRLPYALSGCLECPGGFMIGMHL 639
            P G     LFAPK IC+IS +P Y  +R FL+ +Y ISLS ++VPLERYI+ F   +P+P PG    +++L+    +    S L P+ LH+P    LPLMD+D+ APFRCLS+++VL IF LLL E +L+F+SS   LLT+V E + +L+FPL+W S Y+PRLP  L+  L+ PG F+IG+++
Sbjct:  422 PAGRSDHALFAPKCICIISHWPFYRALRSFLQQIYRISLSPSRVPLERYIAYFTHYMPLPPPGQHVLNLHLDLGMQDRIENSTLAPITLHLPDTRSLPLMDLDYEAPFRCLSLDNVLKIFVLLLMEERLLFMSSSTSLLTEVTETILTLLFPLEWTSCYIPRLPNKLTEILDAPGSFLIGIYI 604
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BLAST of mRNA_P-wetherbeei_contig15246.1.2 vs. uniprot
Match: A0A482T704_9ARCH (UDENN domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T704_9ARCH)

HSP 1 Score: 177 bits (450), Expect = 1.010e-47
Identity = 84/179 (46.93%), Postives = 121/179 (67.60%), Query Frame = 1 
Query:  109 DCLFAPKTICVISRFPIYGVMRRFLRHLYAISLSETQVPLERYISMFVSCIPMPAPGGRNFHVYLEDLENEDPRMSRLKPLNLHMPPYAWLPLMDIDFSAPFRCLSIESVLSIFSLLLQEAKLIFLSSRAELLTQVMEAMRSLIFPLDWQSVYVPRLPYALSGCLECPGGFMIGMHLTK 645
            + +F PK ICV++R P Y  MRR+LRH+Y++SLS    PLE +IS  V  +P+P  GGR FHV L D      +   + P+   +PP  + PLMD+DF+ P RC+S++ +L++F L+L+EAKLIF+S    +LT+ ME +R L+FPL W S +V RLP +L G L+ PGG MIG+H+ +
Sbjct:   31 EAIFCPKVICVLTRKPFYRAMRRYLRHIYSLSLSTAICPLEHFISTIVHQVPLPVEGGRPFHVVL-DAALISVKSKPMSPIIFQVPPQRFFPLMDLDFAGPLRCMSVDVMLAVFLLMLREAKLIFISCSNTMLTETMETLRMLLFPLMWSSCFVSRLPTSLHGLLQAPGGLMIGVHMEQ 208
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BLAST of mRNA_P-wetherbeei_contig15246.1.2 vs. uniprot
Match: A0A835ZAJ8_9STRA (DENN domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAJ8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.210e-40
Identity = 67/84 (79.76%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:  394 IDFSAPFRCLSIESVLSIFSLLLQEAKLIFLSSRAELLTQVMEAMRSLIFPLDWQSVYVPRLPYALSGCLECPGGFMIGMHLTK 645
            +DF APFRCLS+   L+ F L+LQEAK++F+SSRAELLTQVMEA+RSLIFPL+WQSVYVPRLP ALSGCLECPGGFMIGMHLT+
Sbjct:    1 VDFGAPFRCLSVPRALAAFGLVLQEAKVLFISSRAELLTQVMEALRSLIFPLEWQSVYVPRLPRALSGCLECPGGFMIGMHLTQ 84
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BLAST of mRNA_P-wetherbeei_contig15246.1.2 vs. uniprot
Match: A0A2R5GQK2_9STRA (DENN domain-containing protein 4C n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQK2_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.280e-29
Identity = 63/181 (34.81%), Postives = 102/181 (56.35%), Query Frame = 1 
Query:   94 GGGGRDCLFAPKTICVISRFPIYGVMRRFLRHLYAISLSETQVPLERYISMFVSCIPMPAPGGRNFHVYLEDLENEDPRMSRLKPLNLHMPPYAWLPLMDIDFSAPFRCLSIESVLSIFSLLLQEAKLIFLSSRAELLTQVMEAMRSLIFPLDWQSVYVPRLPYALSGCLECPGGFMIGMH 636
            G G    ++ P  +C++S FP Y   ++FL  LY +S+S T +P+ERY++  +  +P+P PG   F +               + ++  MPP   LP+  +++   FRCL  +  + +F+L+L E K+I  S    +L QV EAMRSL+FPL+WQ++Y+P  P  L+  L  P  F+IG+ 
Sbjct:  491 GEGAAQKIYCPTVLCILSHFPFYREFKQFLMLLYQVSISSTVIPIERYVAQLMYELPVPRPGTSGFVLQFGAAH---------RGIHFSMPPEGGLPIASVNYETVFRCLGPKEFVQLFALILLEKKIILHSRYVSVLNQVAEAMRSLMFPLNWQNIYIPVCPNNLAHFLAAPRPFVIGLQ 662
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BLAST of mRNA_P-wetherbeei_contig15246.1.2 vs. uniprot
Match: A0A6A5BZU6_NAEFO (UDENN domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BZU6_NAEFO)

HSP 1 Score: 122 bits (307), Expect = 1.340e-28
Identity = 62/174 (35.63%), Postives = 102/174 (58.62%), Query Frame = 1 
Query:  115 LFAPKTICVISRFPIYGVMRRFLRHLYAISLSETQVPLERYISMFVSCIPMPAPGGRNFHVYLEDLENEDPRMSRLKPLNLHMPPYAWLPLMDIDFSAPFRCLSIESVLSIFSLLLQEAKLIFLSSRAELLTQVMEAMRSLIFPLDWQSVYVPRLPYALSGCLECPGGFMIGMH 636
            ++  K+IC+IS +P Y V + FL  +Y IS++ +++P+ER+IS FVS +P+P+ G    H  + D           K + +  PP   LPL ++DF   F  LS++++L +F L+LQE K++F+S    +LT V E +  L+FP  W  +Y+P LP   +  L  P  F++G+ 
Sbjct:  200 IYMSKSICIISHYPFYNVFKFFLTQMYRISITPSKIPIERFISNFVSEVPLPSQGKVQVHYSIGD-----------KEIYITRPPPNDLPLAELDFELLFSVLSLDNILILFDLILQERKILFISEHVGILTPVAEIICQLLFPFKWHHIYIPLLPAKCAEFLFAPVPFIMGIQ 362
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BLAST of mRNA_P-wetherbeei_contig15246.1.2 vs. uniprot
Match: A0A6G0WGL3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGL3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.960e-28
Identity = 63/174 (36.21%), Postives = 101/174 (58.05%), Query Frame = 1 
Query:  115 LFAPKTICVISRFPIYGVMRRFLRHLYAISLSETQVPLERYISMFVSCIPMPAPGGRNFHVYLEDLENEDPRMSRLKPLNLHMPPYAWLPLMDIDFSAPFRCLSIESVLSIFSLLLQEAKLIFLSSRAELLTQVMEAMRSLIFPLDWQSVYVPRLPYALSGCLECPGGFMIGMH 636
            +++PK + V+S +P +   R FL+ +Y +SLSET +PLERYI+ FV+ IP+P PG     + L +           + L +  PP   LP  D  F   F+ L + +V+++F+ LL E K+   S    +LT + EA+ +L+FPL WQ  Y+P LP +L   ++ P  F++G+H
Sbjct:  294 VYSPKCLVVVSHYPFFSCFRTFLQQMYRVSLSETPLPLERYIANFVAEIPVPPPGRVQVQLTLPE-----------RTLMVSRPPKNQLPQADFSFRPLFQMLDLHNVMTVFTCLLFEQKVALCSKHLSVLTPIAEALVALLFPLYWQGAYIPILPSSLLDVIDAPVPFLVGVH 456
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BLAST of mRNA_P-wetherbeei_contig15246.1.2 vs. uniprot
Match: A0A8K1CDD8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDD8_PYTOL)

HSP 1 Score: 122 bits (305), Expect = 2.690e-28
Identity = 64/174 (36.78%), Postives = 98/174 (56.32%), Query Frame = 1 
Query:  115 LFAPKTICVISRFPIYGVMRRFLRHLYAISLSETQVPLERYISMFVSCIPMPAPGGRNFHVYLEDLENEDPRMSRLKPLNLHMPPYAWLPLMDIDFSAPFRCLSIESVLSIFSLLLQEAKLIFLSSRAELLTQVMEAMRSLIFPLDWQSVYVPRLPYALSGCLECPGGFMIGMH 636
            +F PK I V S +P +   R+FL+ +Y I+LSE  +P+ERYI+ FVS +P+P  G     + L D           + L +  PP+  LPL+D  F   F+ L + +VL +F+  + E K++  S    LLT V EA+ S++ P  WQ  Y+P LP +L   ++ P  F++GMH
Sbjct:  382 VFCPKCIVVTSHYPYFSAFRQFLQQVYRITLSEAPMPIERYITNFVSEVPLPPRGQIQVQLTLPD-----------RNLVISRPPHNELPLVDFSFRPLFQALDVNNVLQLFTCAVLEYKIVLCSKHIALLTPVAEAILSVLLPFSWQGAYIPVLPSSLLDVIDAPVPFLVGMH 544
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15246.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3F8_ECTSI5.030e-9582.22UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JH16_9PHAE2.630e-9482.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CQX3_9STRA6.120e-4948.09Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7T7D8_9STRA1.180e-4848.09UDENN n=1 Tax=Nannochloropsis gaditana TaxID=72520... [more]
A0A482T704_9ARCH1.010e-4746.93UDENN domain-containing protein n=1 Tax=archaeon T... [more]
A0A835ZAJ8_9STRA1.210e-4079.76DENN domain-containing protein (Fragment) n=1 Tax=... [more]
A0A2R5GQK2_9STRA1.280e-2934.81DENN domain-containing protein 4C n=1 Tax=Hondaea ... [more]
A0A6A5BZU6_NAEFO1.340e-2835.63UDENN domain-containing protein n=2 Tax=Naegleria ... [more]
A0A6G0WGL3_9STRA1.960e-2836.21Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8K1CDD8_PYTOL2.690e-2836.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15246contigP-wetherbeei_contig15246:115..1540 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G3F8
Preferred nameSCD1
PFAMsDENN,MORN,WD40,dDENN,uDENN
Model size648
Max annot lvl2759|Eukaryota
KEGG koko:K20161
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000278,GO:0000281,GO:0000819,GO:0000910,GO:0000911,GO:0001568,GO:0001570,GO:0001932,GO:0001934,GO:0001944,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003700,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005783,GO:0005794,GO:0005886,GO:0006275,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007154,GO:0007165,GO:0007166,GO:0007176,GO:0007219,GO:0007275,GO:0008150,GO:0008152,GO:0008156,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009653,GO:0009791,GO:0009825,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010235,GO:0010374,GO:0010440,GO:0010468,GO:0010469,GO:0010498,GO:0010506,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010594,GO:0010604,GO:0010605,GO:0010632,GO:0010638,GO:0010646,GO:0010647,GO:0010721,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010948,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023056,GO:0030135,GO:0030136,GO:0030154,GO:0030162,GO:0030163,GO:0030234,GO:0030323,GO:0030324,GO:0030332,GO:0030334,GO:0030674,GO:0031146,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031347,GO:0031348,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031410,GO:0031461,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032446,GO:0032501,GO:0032502,GO:0032506,GO:0032875,GO:0032876,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033157,GO:0033554,GO:0033674,GO:0034644,GO:0035239,GO:0035295,GO:0036211,GO:0040007,GO:0040012,GO:0042058,GO:0042176,GO:0042325,GO:0042327,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043525,GO:0043535,GO:0043549,GO:0043632,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045309,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045670,GO:0045671,GO:0045732,GO:0045741,GO:0045742,GO:0045765,GO:0045786,GO:0045824,GO:0045859,GO:0045860,GO:0045862,GO:0045934,GO:0045937,GO:0048471,GO:0048513,GO:0048514,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050730,GO:0050731,GO:0050776,GO:0050777,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050816,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051093,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051219,GO:0051222,GO:0051223,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051252,GO:0051270,GO:0051276,GO:0051301,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051716,GO:0051726,GO:0055106,GO:0060090,GO:0060255,GO:0060284,GO:0060341,GO:0060541,GO:0061097,GO:0061098,GO:0061136,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070201,GO:0070372,GO:0070374,GO:0070647,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071944,GO:0072358,GO:0072359,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090049,GO:0090087,GO:0090316,GO:0090329,GO:0090558,GO:0097027,GO:0097708,GO:0098772,GO:0098813,GO:0104004,GO:0140096,GO:0140110,GO:1900407,GO:1900409,GO:1901184,GO:1901186,GO:1901214,GO:1901216,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1902105,GO:1902106,GO:1902175,GO:1902177,GO:1902410,GO:1902494,GO:1902531,GO:1902533,GO:1902882,GO:1902884,GO:1903010,GO:1903011,GO:1903025,GO:1903026,GO:1903047,GO:1903050,GO:1903052,GO:1903146,GO:1903201,GO:1903203,GO:1903209,GO:1903214,GO:1903223,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903376,GO:1903378,GO:1903506,GO:1903533,GO:1903670,GO:1903706,GO:1903707,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904951,GO:1990234,GO:1990452,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000145,GO:2000273,GO:2000677,GO:2000678,GO:2001141,GO:2001204,GO:2001205,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons4
Evalue8.25e-96
EggNOG OGsCOG5253@1|root,KOG2127@1|root,KOG0229@2759|Eukaryota,KOG2127@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size648
COG categoryL
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186049.469391-CDS-P-wetherbeei_contig15246:114..2491683186049.469391-CDS-P-wetherbeei_contig15246:114..249Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15246 115..249 -
1683186049.4818442-CDS-P-wetherbeei_contig15246:489..5371683186049.4818442-CDS-P-wetherbeei_contig15246:489..537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15246 490..537 -
1683186049.4913828-CDS-P-wetherbeei_contig15246:836..9691683186049.4913828-CDS-P-wetherbeei_contig15246:836..969Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15246 837..969 -
1683186049.5013282-CDS-P-wetherbeei_contig15246:1208..15401683186049.5013282-CDS-P-wetherbeei_contig15246:1208..1540Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15246 1209..1540 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15246.1.2prot_P-wetherbeei_contig15246.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15246 115..1540 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15246.1.2

>prot_P-wetherbeei_contig15246.1.2 ID=prot_P-wetherbeei_contig15246.1.2|Name=mRNA_P-wetherbeei_contig15246.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=216bp
ASGGEENDDDGGDNRDSEADGEGEEDWGAMPGGGGRDCLFAPKTICVISR
FPIYGVMRRFLRHLYAISLSETQVPLERYISMFVSCIPMPAPGGRNFHVY
LEDLENEDPRMSRLKPLNLHMPPYAWLPLMDIDFSAPFRCLSIESVLSIF
SLLLQEAKLIFLSSRAELLTQVMEAMRSLIFPLDWQSVYVPRLPYALSGC
LECPGGFMIGMHLTK*
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mRNA from alignment at P-wetherbeei_contig15246:115..1540-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15246.1.2 ID=mRNA_P-wetherbeei_contig15246.1.2|Name=mRNA_P-wetherbeei_contig15246.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1426bp|location=Sequence derived from alignment at P-wetherbeei_contig15246:115..1540- (Phaeothamnion wetherbeei SAG_119_79)
GCCAGCGGCGGCGAGGAGAACGACGACGATGGCGGCGACAACCGCGACAG
CGAAGCGGACGGCGAAGGCGAGGAGGACTGGGGGGCGATGCCTGGCGGCG
GAGGGCGCGACTGCCTGTTCGCGCCTAAGACCATCTGCGTCATCAGCCGC
TTCCCGATCTACGGCGTAATGCGACGCTTCCTGCGGCACCTGTACGCCAT
CTCACTGAGCGAGACACAGGTGCCGCTGGAGCGCTACATCTCCATGTTTG
TGTCGTGCATCCCCATGCCGGCGCCCGGCGGACGCAACTTTCACGTCTAC
CTGGAGGACCTCGAGAACGAGGACCCCCGCATGTGAGATGGAGAGAAGAG
GAAGGCTGCGAAACGCAGGAAATGCAACCGTGCATCATTTTCTGTGTTTT
AGGAGAAGGGCTCAGTATGCTTGCTTTTCTTACTTTCTCTTTGCAACCCT
GGCTGATTTTGCGCGTCCCTTTCTCCGAAGTTGCCGCGGCTCATTACCCG
GCTGACGCTTTAACTGTTCTCAGCTTTCGTTCTCACTTGCCGTCGTGGGA
TCGAAATCTCTTTTTTGGCAGGTCGAGGTTAAAGCCGCTGAACCTCCACA
TGCCGCCGTACGCGTGGCTGCCGCTGATGGACATCGACTTCAGCGCGCCC
TTCCGCTGCCTCAGCATCGAAAGCGTGCTCTCCATCTTCTCCCTGCTGCT
GCAGGTGCGGCGGGTGGTGTGGGTGGCAGCGGCAATGGCTGGCCACGATG
GCGGCCTTATGGCAGTGGCAGCGATGGCGGCGCGCCAGTGGTGGAAGAAG
CGATTGCTATTGGCGGCGGTCGCGGCTGTTTTGGCGACAGCACCGGCGGC
ATGGCGAGGATGATGGCTTCAGGGCGCTGTATCGTGATTCCTCGCTGACT
TTGCTCATTGCATGTAGTTCCCTGTTATAACTTGTTCCGTTGCACTTTCT
GCCTTTCATCATCTTCGCTCCTCTTCAACACCCTCGCTTCTTTGTTCATT
CAGGAGGCGAAGCTCATCTTCCTTTCAAGCAGGGCTGAGCTGCTGACCCA
GGTAAGCCATTGCATCGCAGTCTGGAATCGGAATATGCGATCCTATCTCT
CTGATAGGGTGCATATCGTTCAAACCATGACATTTCGTCATTCCGAGAAG
CGCACTTCCCCACGATGCGTTTCTGAGGCGCGCAGAGTCTGTAGCAGGCC
GCTGGTGCCCTGGCACGCTTCCGTTTCTTCTGGTGGGCGCGCGGTTGACG
CTGACTTTTTGTTGCATCTTCTTTCCTGCTGTCTTGTGCAGGTGATGGAG
GCGATGCGCAGCCTGATTTTTCCGCTGGACTGGCAGTCGGTCTACGTGCC
GCGGCTGCCGTACGCCCTCTCGGGGTGCTTGGAATGCCCCGGGGGATTCA
TGATCGGCATGCACCTCACTAAGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15246:115..1540-

>mRNA_P-wetherbeei_contig15246.1.2 ID=mRNA_P-wetherbeei_contig15246.1.2|Name=mRNA_P-wetherbeei_contig15246.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=648bp|location=Sequence derived from alignment at P-wetherbeei_contig15246:115..1540- (Phaeothamnion wetherbeei SAG_119_79)
GCCAGCGGCGGCGAGGAGAACGACGACGATGGCGGCGACAACCGCGACAG
CGAAGCGGACGGCGAAGGCGAGGAGGACTGGGGGGCGATGCCTGGCGGCG
GAGGGCGCGACTGCCTGTTCGCGCCTAAGACCATCTGCGTCATCAGCCGC
TTCCCGATCTACGGCGTAATGCGACGCTTCCTGCGGCACCTGTACGCCAT
CTCACTGAGCGAGACACAGGTGCCGCTGGAGCGCTACATCTCCATGTTTG
TGTCGTGCATCCCCATGCCGGCGCCCGGCGGACGCAACTTTCACGTCTAC
CTGGAGGACCTCGAGAACGAGGACCCCCGCATGTCGAGGTTAAAGCCGCT
GAACCTCCACATGCCGCCGTACGCGTGGCTGCCGCTGATGGACATCGACT
TCAGCGCGCCCTTCCGCTGCCTCAGCATCGAAAGCGTGCTCTCCATCTTC
TCCCTGCTGCTGCAGGAGGCGAAGCTCATCTTCCTTTCAAGCAGGGCTGA
GCTGCTGACCCAGGTGATGGAGGCGATGCGCAGCCTGATTTTTCCGCTGG
ACTGGCAGTCGGTCTACGTGCCGCGGCTGCCGTACGCCCTCTCGGGGTGC
TTGGAATGCCCCGGGGGATTCATGATCGGCATGCACCTCACTAAGTAA
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