mRNA_P-wetherbeei_contig15238.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15238.1.1
Unique NamemRNA_P-wetherbeei_contig15238.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15238.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15238contigP-wetherbeei_contig15238:276..1195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size921
Hectar predicted targeting categorysignal peptide
Exons1
Cds size846
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186049.146234-UTR-P-wetherbeei_contig15238:275..3491683186049.146234-UTR-P-wetherbeei_contig15238:275..349Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15238 276..349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186049.1582854-CDS-P-wetherbeei_contig15238:349..11951683186049.1582854-CDS-P-wetherbeei_contig15238:349..1195Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15238 350..1195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15238.1.1prot_P-wetherbeei_contig15238.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15238 350..1195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15238.1.1

>prot_P-wetherbeei_contig15238.1.1 ID=prot_P-wetherbeei_contig15238.1.1|Name=mRNA_P-wetherbeei_contig15238.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=282bp
MQMGFGSRSVLLAVFLLNNTVIAFRPVLNLSPASRAPCRTCLIGAASSDN
SRELPARYSAWDPRGALEALPRLLAKPSAAATENNIDASKSHEGGYAQAH
PVAVAATPTPPGRDSSSQRTTEPTAGDRAETDASQHSAARSSIALVAAFR
AALRTLPFYSEHGSSPASAGGSSQSLPSSLPTQQPPAPPPPPPPTPPSLA
PGQAAGARVLLARQQELALQRPAAPRLRSRGRRSLSLFFKRRVLGAFSRR
NSAWAQVQAFADRGKSKSAMERRTAVTAAAAA
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mRNA from alignment at P-wetherbeei_contig15238:276..1195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15238.1.1 ID=mRNA_P-wetherbeei_contig15238.1.1|Name=mRNA_P-wetherbeei_contig15238.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=920bp|location=Sequence derived from alignment at P-wetherbeei_contig15238:276..1195+ (Phaeothamnion wetherbeei SAG_119_79)
TGCAAATAGGGATCTGCAGCTCGCTCAGCCTCTGTGTGTAGAAGGACGCC
GGTACATTGGGACTAAAAGCTTCTATGCAAATGGGTTTCGGATCTCGCTC
CGTCCTTCTCGCCGTTTTCTTGTTAAACAACACAGTGATCGCTTTCCGTC
CTGTTCTTAACCTCTCCCCTGCAAGTAGAGCTCCATGTCGCACGTGTTTA
ATTGGCGCAGCCTCCAGCGATAACTCTCGAGAACTGCCTGCCCGGTATTC
AGCATGGGATCCACGAGGTGCGCTGGAAGCGTTGCCACGATTGCTTGCGA
AGCCTTCAGCAGCAGCAACGGAAAACAATATCGACGCGTCCAAGTCTCAC
GAGGGTGGCTATGCCCAGGCGCACCCGGTAGCGGTTGCGGCCACGCCGAC
GCCGCCAGGGAGAGATTCTAGTTCTCAAAGGACGACAGAGCCGACGGCGG
GGGACAGGGCAGAAACAGATGCTTCACAGCATTCTGCTGCGCGATCATCC
ATAGCGCTGGTGGCGGCGTTTCGTGCGGCGCTTCGCACCCTGCCATTCTA
CTCCGAACACGGTTCCTCGCCGGCCTCCGCGGGAGGTTCTTCGCAGTCGC
TGCCGTCGTCGTTGCCGACGCAGCAGCCACCAGCGCCGCCTCCACCGCCG
CCGCCGACGCCGCCATCACTGGCTCCAGGGCAGGCCGCCGGCGCTCGAGT
GCTTCTGGCGCGGCAGCAGGAGCTCGCTTTGCAGCGACCGGCAGCACCGA
GGCTTCGTTCGCGGGGCCGGCGTTCCCTTTCGCTCTTTTTCAAGCGGCGC
GTCCTCGGCGCCTTCTCACGGCGCAATTCCGCATGGGCTCAGGTGCAAGC
CTTCGCCGACCGGGGCAAGTCAAAATCCGCCATGGAGCGGAGGACCGCCG
TAACAGCCGCCGCGGCTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15238:276..1195+

>mRNA_P-wetherbeei_contig15238.1.1 ID=mRNA_P-wetherbeei_contig15238.1.1|Name=mRNA_P-wetherbeei_contig15238.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=846bp|location=Sequence derived from alignment at P-wetherbeei_contig15238:276..1195+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAATGGGTTTCGGATCTCGCTCCGTCCTTCTCGCCGTTTTCTTGTT
AAACAACACAGTGATCGCTTTCCGTCCTGTTCTTAACCTCTCCCCTGCAA
GTAGAGCTCCATGTCGCACGTGTTTAATTGGCGCAGCCTCCAGCGATAAC
TCTCGAGAACTGCCTGCCCGGTATTCAGCATGGGATCCACGAGGTGCGCT
GGAAGCGTTGCCACGATTGCTTGCGAAGCCTTCAGCAGCAGCAACGGAAA
ACAATATCGACGCGTCCAAGTCTCACGAGGGTGGCTATGCCCAGGCGCAC
CCGGTAGCGGTTGCGGCCACGCCGACGCCGCCAGGGAGAGATTCTAGTTC
TCAAAGGACGACAGAGCCGACGGCGGGGGACAGGGCAGAAACAGATGCTT
CACAGCATTCTGCTGCGCGATCATCCATAGCGCTGGTGGCGGCGTTTCGT
GCGGCGCTTCGCACCCTGCCATTCTACTCCGAACACGGTTCCTCGCCGGC
CTCCGCGGGAGGTTCTTCGCAGTCGCTGCCGTCGTCGTTGCCGACGCAGC
AGCCACCAGCGCCGCCTCCACCGCCGCCGCCGACGCCGCCATCACTGGCT
CCAGGGCAGGCCGCCGGCGCTCGAGTGCTTCTGGCGCGGCAGCAGGAGCT
CGCTTTGCAGCGACCGGCAGCACCGAGGCTTCGTTCGCGGGGCCGGCGTT
CCCTTTCGCTCTTTTTCAAGCGGCGCGTCCTCGGCGCCTTCTCACGGCGC
AATTCCGCATGGGCTCAGGTGCAAGCCTTCGCCGACCGGGGCAAGTCAAA
ATCCGCCATGGAGCGGAGGACCGCCGTAACAGCCGCCGCGGCTGCC
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