mRNA_P-wetherbeei_contig1519.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1519.1.1
Unique NamemRNA_P-wetherbeei_contig1519.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1519.1.1 vs. uniprot
Match: A0A835ZEV0_9STRA (40S ribosomal protein S4 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEV0_9STRA)

HSP 1 Score: 444 bits (1143), Expect = 1.500e-156
Identity = 210/261 (80.46%), Postives = 241/261 (92.34%), Query Frame = 1 
Query:    7 RGPKKHMKRLAAPRHWMLGKLEGIWAPKPSCGPHSTRECMPLILIVRNRLKYALTKSEANMICMQRLVKVDGKVRTDVNFPAGFMDVVSIEKSSDQFRLLYDTKGRFALHRVSDEEAKYKLCRVKKVEVSKKKIPFLVTHDGRTLRYPDPLVKKNDTIKVDLETGKMVDIIKFEMGNMCMINRGHNTGRVGIITHVERHPGSFDIVSVKDATGATFATRLQNVFVIGQGNRPAVSLPKGKGIKLSILEERANKNA-AANGN 786
            RGPKKH+KRL AP+HW+LGKLEGIWAPKPSCGPH+ REC+PLI+IVRNRLKYALTK+EANMICMQ+ VKVDGKVRTD+NFPAGFMDVVSIEKS+DQFRLLY+TKGRF LHRV DEEAKYKLCRV+KVEVSKKKIPFLVTHDGRT+RYPDPLVK ND+IKVD+ETGKM DI K+E+GN+CMI+RGHNTGRVG I H+ERHPGSFDIV+VKD+ G  FATR  N+FV+G+  RPA+SLP+GKG+KL+ILEERA ++  AANGN
Sbjct:    2 RGPKKHLKRLNAPKHWLLGKLEGIWAPKPSCGPHNGRECLPLIIIVRNRLKYALTKAEANMICMQKHVKVDGKVRTDLNFPAGFMDVVSIEKSADQFRLLYNTKGRFVLHRVKDEEAKYKLCRVQKVEVSKKKIPFLVTHDGRTIRYPDPLVKVNDSIKVDVETGKMSDIYKYEIGNLCMISRGHNTGRVGTIQHIERHPGSFDIVTVKDSAGNVFATRQANIFVLGESTRPAISLPRGKGVKLTILEERAARDKRAANGN 262
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BLAST of mRNA_P-wetherbeei_contig1519.1.1 vs. uniprot
Match: D7FLZ5_ECTSI (40S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLZ5_ECTSI)

HSP 1 Score: 426 bits (1094), Expect = 4.360e-149
Identity = 199/261 (76.25%), Postives = 228/261 (87.36%), Query Frame = 1 
Query:    4 GRGPKKHMKRLAAPRHWMLGKLEGIWAPKPSCGPHSTRECMPLILIVRNRLKYALTKSEANMICMQRLVKVDGKVRTDVNFPAGFMDVVSIEKSSDQFRLLYDTKGRFALHRVSDEEAKYKLCRVKKVEVSKKKIPFLVTHDGRTLRYPDPLVKKNDTIKVDLETGKMVDIIKFEMGNMCMINRGHNTGRVGIITHVERHPGSFDIVSVKDATGATFATRLQNVFVIGQGNRPAVSLPKGKGIKLSILEERANKNAAANGN 786
            GRGPKKHMKRL AP+HW+LGK+EGIWAPKPS GPH  REC+PL++I+RNRLKYALT SEANMICMQ+L+KVDGKVRTDVNFPAGFMDVV I+KS D FRLLY+TKGRF LHR+S+EE+K+KLCRV KVE+SK KIP+LVTHDGRT+RYPDPL+K NDTIKVDLETGK +D IKFE+GN+CMI RG N GRVGI+ H+ERHPGSFDIVSVKD  G  FATRLQN+F +G G R  VSLPKGKG+KL+ILEE+A K   A  N
Sbjct:    2 GRGPKKHMKRLNAPKHWLLGKMEGIWAPKPSPGPHLNRECLPLVIIIRNRLKYALTMSEANMICMQKLIKVDGKVRTDVNFPAGFMDVVQIQKSGDLFRLLYNTKGRFVLHRISEEESKFKLCRVNKVEMSKNKIPYLVTHDGRTIRYPDPLIKVNDTIKVDLETGKAIDTIKFEIGNVCMIARGRNAGRVGIMQHIERHPGSFDIVSVKDGAGHVFATRLQNIFTMGHGTRAMVSLPKGKGVKLTILEEKAAKIKKAQNN 262
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BLAST of mRNA_P-wetherbeei_contig1519.1.1 vs. uniprot
Match: A0A7S2WPT4_9STRA (40S ribosomal protein S4 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPT4_9STRA)

HSP 1 Score: 397 bits (1019), Expect = 2.030e-137
Identity = 183/255 (71.76%), Postives = 217/255 (85.10%), Query Frame = 1 
Query:    7 RGPKKHMKRLAAPRHWMLGKLEGIWAPKPSCGPHSTRECMPLILIVRNRLKYALTKSEANMICMQRLVKVDGKVRTDVNFPAGFMDVVSIEKSSDQFRLLYDTKGRFALHRVSDEEAKYKLCRVKKVEVSKKKIPFLVTHDGRTLRYPDPLVKKNDTIKVDLETGKMVDIIKFEMGNMCMINRGHNTGRVGIITHVERHPGSFDIVSVKDATGATFATRLQNVFVIGQGNRPAVSLPKGKGIKLSILEERANKNA 771
            RGP+KH+KRL AP+ WMLGK+EGIWAP+PS GPH  REC+PLILI+RNRLKYALT  E   ICMQRLVK+DGKVRTD+ +PAGFMDVV IE+S D FRLLYD KGRF LHRV ++E  +KLCRV KV+VS KKIP++VTHDGRT+RYPDPL+K NDT+KVDL TGK++D IKFE+G +CMI RG N GRVG+I HVE+HPGSFD+++VKDA G  FATRL N+FVIG   +P VSLPKGKGIKLSI+EERA ++A
Sbjct:   19 RGPRKHLKRLNAPKAWMLGKMEGIWAPRPSAGPHKLRECLPLILILRNRLKYALTLQEVKAICMQRLVKIDGKVRTDMGYPAGFMDVVQIERSGDLFRLLYDVKGRFVLHRVKEDEGSFKLCRVMKVDVSAKKIPYVVTHDGRTIRYPDPLIKANDTVKVDLATGKIIDHIKFEIGRLCMIQRGRNAGRVGVIQHVEKHPGSFDMITVKDAAGKVFATRLGNIFVIGDDKKPWVSLPKGKGIKLSIVEERAMRDA 273
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BLAST of mRNA_P-wetherbeei_contig1519.1.1 vs. uniprot
Match: W7TUQ1_9STRA (40S ribosomal protein S4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUQ1_9STRA)

HSP 1 Score: 395 bits (1014), Expect = 6.180e-137
Identity = 184/253 (72.73%), Postives = 222/253 (87.75%), Query Frame = 1 
Query:    7 RGPKKHMKRLAAPRHWMLGKLEGIWAPKPSCGPHSTRECMPLILIVRNRLKYALTKSEANMICMQRLVKVDGKVRTDVNFPAGFMDVVSIEKSSDQFRLLYDTKGRFALHRVSD--EEAKYKLCRVKKVEVSKKKIPFLVTHDGRTLRYPDPLVKKNDTIKVDLETGKMVDIIKFEMGNMCMINRGHNTGRVGIITHVERHPGSFDIVSVKDATGATFATRLQNVFVIGQGNRPAVSLPKGKGIKLSILEERA 759
            RGPKKH+KR+ APRHWML K++GI+AP+PS GPH  RE +PLILI+RNRLKYALTK+EAN ICMQ+LVKVDGKVRTD+NFPAGFMDV++IEKS D+FRLLYD KGRF L R+ +  EE  +KLCRV K E+S  KIP++VTHDGRT+RYPDPL+K +DT+KVD+ TGK++D IKF++GN+  + RGHNTGRVG+I H+ERHPGSFDI++VKDA G TFATR QNVFVIGQGN+P VSLPKGKGIKLSI+EER+
Sbjct:    3 RGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRNRLKYALTKAEANAICMQKLVKVDGKVRTDLNFPAGFMDVITIEKSGDEFRLLYDVKGRFYLQRLEEGSEERNFKLCRVNKNEMSANKIPYIVTHDGRTIRYPDPLIKMDDTVKVDIRTGKILDFIKFDLGNLVYLTRGHNTGRVGMIQHIERHPGSFDIITVKDAQGHTFATRRQNVFVIGQGNKPMVSLPKGKGIKLSIVEERS 255
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BLAST of mRNA_P-wetherbeei_contig1519.1.1 vs. uniprot
Match: F0WD75_9STRA (40S ribosomal protein S4 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WD75_9STRA)

HSP 1 Score: 386 bits (991), Expect = 2.030e-133
Identity = 177/251 (70.52%), Postives = 212/251 (84.46%), Query Frame = 1 
Query:    7 RGPKKHMKRLAAPRHWMLGKLEGIWAPKPSCGPHSTRECMPLILIVRNRLKYALTKSEANMICMQRLVKVDGKVRTDVNFPAGFMDVVSIEKSSDQFRLLYDTKGRFALHRVSDEEAKYKLCRVKKVEVSKKKIPFLVTHDGRTLRYPDPLVKKNDTIKVDLETGKMVDIIKFEMGNMCMINRGHNTGRVGIITHVERHPGSFDIVSVKDATGATFATRLQNVFVIGQGNRPAVSLPKGKGIKLSILEERA 759
            RGP+KH+KRL+AP+HWMLGKL+G+WAP+PS GPH  REC+PLI+I+RNRLKYALTK E  MICMQ+ VKVDGK+R D NFPAGFMD+V I KS DQFRLLYDTKGRF LHRV+ EE KYKLC+V + E +KK IP++ T+DGRT+RYPDPLVK NDT+K+DLETGK+VD IKFE GN+ M+ RG NTG VG++  +ERH GSF I  ++D+TG  FATRL NVF IG G+RP +SLPKGKGIKLSILEER+
Sbjct:    3 RGPRKHLKRLSAPKHWMLGKLDGVWAPRPSSGPHKLRECLPLIIILRNRLKYALTKQEVTMICMQKAVKVDGKIRVDPNFPAGFMDIVEIPKSGDQFRLLYDTKGRFVLHRVNHEEKKYKLCKVIRQEYTKKGIPYVATNDGRTIRYPDPLVKSNDTVKIDLETGKIVDFIKFETGNLVMVTRGRNTGIVGMLHQIERHEGSFSIARIRDSTGHEFATRLGNVFAIGNGSRPWISLPKGKGIKLSILEERS 253
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BLAST of mRNA_P-wetherbeei_contig1519.1.1 vs. uniprot
Match: A0A7N5PAX9_AILME (40S ribosomal protein S4 n=22 Tax=Amniota TaxID=32524 RepID=A0A7N5PAX9_AILME)

HSP 1 Score: 383 bits (983), Expect = 3.600e-132
Identity = 172/256 (67.19%), Postives = 217/256 (84.77%), Query Frame = 1 
Query:    7 RGPKKHMKRLAAPRHWMLGKLEGIWAPKPSCGPHSTRECMPLILIVRNRLKYALTKSEANMICMQRLVKVDGKVRTDVNFPAGFMDVVSIEKSSDQFRLLYDTKGRFALHRVSDEEAKYKLCRVKKVEVSKKKIPFLVTHDGRTLRYPDPLVKKNDTIKVDLETGKMVDIIKFEMGNMCMINRGHNTGRVGIITHVERHPGSFDIVSVKDATGATFATRLQNVFVIGQGNRPAVSLPKGKGIKLSILEERANKNAA 774
            RGPKKH+KR+AAP+HWML KL G++AP+PS GPH  REC+PLI+ +RNRLKYALT  E   ICMQR +K+DGKVRTD+ +PAGFMDV+SIEK+++ FRL+YDTKGRFA+HR++ EEAKYKLC+V+K+ V  K IP LVTHD RT+RYPDPL+K NDTI++DLETGK+ D IKF+ GN+CM+  G N GR+G+IT+ ERHPGSFD+V VKDA G +FATRL N+FVIG+GN+P +SLP+GKGI+L+I EER  + AA
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTAEHFRLVYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 258
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BLAST of mRNA_P-wetherbeei_contig1519.1.1 vs. uniprot
Match: A0A401S1R2_CHIPU (40S ribosomal protein S4 n=8 Tax=Gnathostomata TaxID=7776 RepID=A0A401S1R2_CHIPU)

HSP 1 Score: 383 bits (983), Expect = 3.600e-132
Identity = 173/256 (67.58%), Postives = 216/256 (84.38%), Query Frame = 1 
Query:    7 RGPKKHMKRLAAPRHWMLGKLEGIWAPKPSCGPHSTRECMPLILIVRNRLKYALTKSEANMICMQRLVKVDGKVRTDVNFPAGFMDVVSIEKSSDQFRLLYDTKGRFALHRVSDEEAKYKLCRVKKVEVSKKKIPFLVTHDGRTLRYPDPLVKKNDTIKVDLETGKMVDIIKFEMGNMCMINRGHNTGRVGIITHVERHPGSFDIVSVKDATGATFATRLQNVFVIGQGNRPAVSLPKGKGIKLSILEERANKNAA 774
            RGPKKH+KRLAAPRHWML KL G++AP+PS GPH  REC+PLI+ +RNRLKYALT  E   ICMQR +K+DGKVRTDV +P GFMDV+SI+K+S+ FRL+YDTKGRFA+HR++ EEAKYKLC+V+K+ V  K IP LVTHD RT+RYPDPL+K NDT+++DL+TGK+ D IKF+ GN+CM+  G N GR+G+IT+ ERHPGSFD+V VKDA G +FATRL N+FVIG+GN+P VSLP+GKGI+L+I EER  + AA
Sbjct:    3 RGPKKHLKRLAAPRHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDVTYPTGFMDVISIDKTSEHFRLIYDTKGRFAVHRITAEEAKYKLCKVRKIRVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLDTGKITDFIKFDTGNLCMVIGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWVSLPRGKGIRLTIAEERDKRLAA 258
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BLAST of mRNA_P-wetherbeei_contig1519.1.1 vs. uniprot
Match: A0A6P7LXE5_BETSP (40S ribosomal protein S4 n=1 Tax=Betta splendens TaxID=158456 RepID=A0A6P7LXE5_BETSP)

HSP 1 Score: 382 bits (982), Expect = 5.110e-132
Identity = 174/256 (67.97%), Postives = 215/256 (83.98%), Query Frame = 1 
Query:    7 RGPKKHMKRLAAPRHWMLGKLEGIWAPKPSCGPHSTRECMPLILIVRNRLKYALTKSEANMICMQRLVKVDGKVRTDVNFPAGFMDVVSIEKSSDQFRLLYDTKGRFALHRVSDEEAKYKLCRVKKVEVSKKKIPFLVTHDGRTLRYPDPLVKKNDTIKVDLETGKMVDIIKFEMGNMCMINRGHNTGRVGIITHVERHPGSFDIVSVKDATGATFATRLQNVFVIGQGNRPAVSLPKGKGIKLSILEERANKNAA 774
            RGPKKH+KR+AAP+HWML KL G++AP+PS GPH  REC+PLI+ +RNRLKYALT  E   ICMQR +K+DGKVRTD+ +PAGFMDVVSIEK+ + FRL+YD KGRFA+HR++ EEAKYKLC+V+K+ V  K IP LVTHD RT+RYPDPL+K NDTI++D+ETGK+ D +KF+ GN+CM+  G N GRVG+IT+ ERHPGSFD+V VKD TG TFATRL N+FVIG+GN+P VSLPKGKGI+L+I EER  + AA
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVVSIEKTGEHFRLIYDVKGRFAVHRITAEEAKYKLCKVRKIIVGTKGIPHLVTHDARTIRYPDPLIKANDTIRIDIETGKITDHVKFDTGNLCMVTGGANLGRVGVITNRERHPGSFDVVHVKDTTGNTFATRLGNIFVIGKGNKPWVSLPKGKGIRLTITEERDKRLAA 258
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BLAST of mRNA_P-wetherbeei_contig1519.1.1 vs. uniprot
Match: A0A7L3BJT7_PELUR (RS4 protein (Fragment) n=4 Tax=Amniota TaxID=32524 RepID=A0A7L3BJT7_PELUR)

HSP 1 Score: 382 bits (981), Expect = 7.000e-132
Identity = 171/256 (66.80%), Postives = 216/256 (84.38%), Query Frame = 1 
Query:    7 RGPKKHMKRLAAPRHWMLGKLEGIWAPKPSCGPHSTRECMPLILIVRNRLKYALTKSEANMICMQRLVKVDGKVRTDVNFPAGFMDVVSIEKSSDQFRLLYDTKGRFALHRVSDEEAKYKLCRVKKVEVSKKKIPFLVTHDGRTLRYPDPLVKKNDTIKVDLETGKMVDIIKFEMGNMCMINRGHNTGRVGIITHVERHPGSFDIVSVKDATGATFATRLQNVFVIGQGNRPAVSLPKGKGIKLSILEERANKNAA 774
            RGPKKH+KR+AAP+HWML KL G++AP+PS GPH  REC+PLI+ +RNRLKYALT  E   ICMQR +K+DGKVRTD+ +PAGFMDV+SIEK+ + FRL+YDTKGRFA+HR++ EEAKYKLC+V+K+ V  K IP LVTHD RT+RYPDPL+K NDT+++DLETGK+ D IKF+ GN+CM+  G N GR+G+IT+ ERHPGSFD+V VKDA G +FATRL N+FVIG+GN+P +SLP+GKGI+L+I EER  + AA
Sbjct:    2 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRPAA 257
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BLAST of mRNA_P-wetherbeei_contig1519.1.1 vs. uniprot
Match: B5FXF0_TAEGU (40S ribosomal protein S4 n=8 Tax=Neognathae TaxID=8825 RepID=B5FXF0_TAEGU)

HSP 1 Score: 382 bits (981), Expect = 7.250e-132
Identity = 171/256 (66.80%), Postives = 216/256 (84.38%), Query Frame = 1 
Query:    7 RGPKKHMKRLAAPRHWMLGKLEGIWAPKPSCGPHSTRECMPLILIVRNRLKYALTKSEANMICMQRLVKVDGKVRTDVNFPAGFMDVVSIEKSSDQFRLLYDTKGRFALHRVSDEEAKYKLCRVKKVEVSKKKIPFLVTHDGRTLRYPDPLVKKNDTIKVDLETGKMVDIIKFEMGNMCMINRGHNTGRVGIITHVERHPGSFDIVSVKDATGATFATRLQNVFVIGQGNRPAVSLPKGKGIKLSILEERANKNAA 774
            RGPKKH+KR+AAP+HWML KL G++AP+PS GPH  REC+PLI+ +RNRLKYALT  E   ICMQR +K+DGKVRTD+ +PAGFMDV+SIEK+ + FRL+YDTKGRFA+HR++ EEAKYKLC+V+K+ V  K IP LVTHD RT+RYPDPL+K NDT+++DLETGK+ D IKF+ GN+CM+  G N GR+G+IT+ ERHPGSFD+V VKDA G +FATRL N+FVIG+GN+P +SLP+GKGI+L+I EER  + AA
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 258
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1519.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEV0_9STRA1.500e-15680.4640S ribosomal protein S4 n=2 Tax=Tribonema minus T... [more]
D7FLZ5_ECTSI4.360e-14976.2540S ribosomal protein S4 n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2WPT4_9STRA2.030e-13771.7640S ribosomal protein S4 n=1 Tax=Rhizochromulina m... [more]
W7TUQ1_9STRA6.180e-13772.7340S ribosomal protein S4 n=2 Tax=Monodopsidaceae T... [more]
F0WD75_9STRA2.030e-13370.5240S ribosomal protein S4 n=1 Tax=Albugo laibachii ... [more]
A0A7N5PAX9_AILME3.600e-13267.1940S ribosomal protein S4 n=22 Tax=Amniota TaxID=32... [more]
A0A401S1R2_CHIPU3.600e-13267.5840S ribosomal protein S4 n=8 Tax=Gnathostomata Tax... [more]
A0A6P7LXE5_BETSP5.110e-13267.9740S ribosomal protein S4 n=1 Tax=Betta splendens T... [more]
A0A7L3BJT7_PELUR7.000e-13266.80RS4 protein (Fragment) n=4 Tax=Amniota TaxID=32524... [more]
B5FXF0_TAEGU7.250e-13266.8040S ribosomal protein S4 n=8 Tax=Neognathae TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1519contigP-wetherbeei_contig1519:1775..5372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLZ5
Preferred nameRPS4X
PFAMs40S_S4_C,KOW,RS4NT,Ribosomal_S4e,S4
Model size789
Max annot lvl2759|Eukaryota
KEGG koko:K02987,ko:K22377
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000822,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005856,GO:0005886,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009636,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022626,GO:0022627,GO:0030029,GO:0030036,GO:0030684,GO:0030686,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034248,GO:0034250,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0035770,GO:0036094,GO:0036464,GO:0042127,GO:0042221,GO:0042493,GO:0042886,GO:0043009,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045471,GO:0045727,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0060255,GO:0060322,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0097305,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901700,GO:1990904,GO:2000112
Exons7
Evalue6.43e-144
EggNOG OGsCOG1471@1|root,KOG0378@2759|Eukaryota
Ec32 ortholog description40S ribosomal protein S4
Ec32 orthologEc-22_000290.1
EC2.3.2.27
DescriptionrRNA binding
Cds size765
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1519.1.1prot_P-wetherbeei_contig1519.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1519 1799..5372 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186047.4874706-UTR-P-wetherbeei_contig1519:1774..17981683186047.4874706-UTR-P-wetherbeei_contig1519:1774..1798Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1519 1775..1798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186047.4967535-CDS-P-wetherbeei_contig1519:1798..18901683186047.4967535-CDS-P-wetherbeei_contig1519:1798..1890Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1519 1799..1890 +
1683186047.5039253-CDS-P-wetherbeei_contig1519:2734..28311683186047.5039253-CDS-P-wetherbeei_contig1519:2734..2831Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1519 2735..2831 +
1683186047.5116045-CDS-P-wetherbeei_contig1519:3455..35041683186047.5116045-CDS-P-wetherbeei_contig1519:3455..3504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1519 3456..3504 +
1683186047.5197077-CDS-P-wetherbeei_contig1519:3939..40611683186047.5197077-CDS-P-wetherbeei_contig1519:3939..4061Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1519 3940..4061 +
1683186047.5278347-CDS-P-wetherbeei_contig1519:4381..45961683186047.5278347-CDS-P-wetherbeei_contig1519:4381..4596Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1519 4382..4596 +
1683186047.535667-CDS-P-wetherbeei_contig1519:4986..50771683186047.535667-CDS-P-wetherbeei_contig1519:4986..5077Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1519 4987..5077 +
1683186047.5432968-CDS-P-wetherbeei_contig1519:5273..53721683186047.5432968-CDS-P-wetherbeei_contig1519:5273..5372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1519 5274..5372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1519.1.1

>prot_P-wetherbeei_contig1519.1.1 ID=prot_P-wetherbeei_contig1519.1.1|Name=mRNA_P-wetherbeei_contig1519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=255bp
MKRLAAPRHWMLGKLEGIWAPKPSCGPHSTRECMPLILIVRNRLKYALTK
SEANMICMQRLVKVDGKVRTDVNFPAGFMDVVSIEKSSDQFRLLYDTKGR
FALHRVSDEEAKYKLCRVKKVEVSKKKIPFLVTHDGRTLRYPDPLVKKND
TIKVDLETGKMVDIIKFEMGNMCMINRGHNTGRVGIITHVERHPGSFDIV
SVKDATGATFATRLQNVFVIGQGNRPAVSLPKGKGIKLSILEERANKNAA
ANGN*
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mRNA from alignment at P-wetherbeei_contig1519:1775..5372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1519.1.1 ID=mRNA_P-wetherbeei_contig1519.1.1|Name=mRNA_P-wetherbeei_contig1519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3598bp|location=Sequence derived from alignment at P-wetherbeei_contig1519:1775..5372+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGGGCGAGGACCGAAGAAGCACATGAAGCGGCTGGCGGCGCCGCGGCA
CTGGATGCTCGGCAAGCTCGAGGGCATCTGGGCACCCAAGCCATCGTGCG
GCCCGCACTCCACCCGGTGAGAGCAGCTGATCTGTCCTCCCGTTGTTTTT
TCTCGAATTATGTCAAAGCGTCTTACTTTTTCCCACCTGCATTTCGTCTG
CTTCGCGTTAAGCTCTTCCTGGTCACGCGTTCGGCTCACGCGCTGCGGCA
ATGTTGTTTCTTGCTCGACCATTGGAAAGACTCCTTTGAGGTTTTCGTTG
AGAGCGTTTACCGTTGAGCCCTTGGCATCGGTTGTGCGGGGCTTTCGTAT
TCTTCCTGCCTTGAAATCCTGGGCGGGTTATAGAAGCCCGTGACGTCATC
GTCGCTGAGCGCTTGCCGCAGCTATCAGCTCGCTCTATTGCATCGCCAAA
AGGAGCCTGCGCCGCATATGAAGCCGGATGGCGCTGCTGTCACAGCCGCC
GCTACTACCATCCTGCGATTGCTCGCACGGAGCTTCTTTTTCCATAGCGG
GGGCAGTATCAGGAACGTCGACGGCGGTGGCGGCCGCGACGGCAAAAAAT
GGCTGCATTCACCCGCGGCGGGGCAGCTGCTGAGCCACTGGGAAAGGGAG
GGTCATCGGGAGCGCTCCTCGTATGGAGATCTGACGGCCTCCACCGCACG
CGGACGCTGGCCTTCTTGGTTGTGCCGACAATCGGCGGCGGCTGCGGCAG
AGGATCGGCGGCGATTGTGGGACCCTATTTTACCATCTCGGTACCTGCCT
GCGCCGTCTTCTATTCTTTTATTCTTTCTGGTCCATACTCCAAATCAAAA
CAGTGGACTGACTGCCATTGTCTCTCATCTCTCGTCTTCCGCCACGGCTT
CGCCACGGCGTCGAAACGGCTGGAACCGCTGGGACCAAACCAAAATGTTC
CCGTGCACAGGGAGTGCATGCCGCTCATCCTGATCGTGCGGAACCGCTTG
AAGTACGCGTTGACGAAGAGCGAGGCCAACATGATCTGCATGCAGCGGCT
CGTGAAGGTATATTCATTTACCATAGTCGGTCGCCGAGCGGTAACCGCCT
TTTTTCCCGTATCATGTACCGCTAAGTCGTCCATGGGCTTTGGCAATGCG
GAAGAGCCGCTGCTGTCGCTGTTGTCTTGCTGCATTTCTCCCGCTTGCCG
CCGCTCCGCGGTTGCCTGATGATTGCACTACTCTTCCCGAAGCCGGTGCT
TTTCGGCGGCGGTGGCGTCTCTGGGTATGGCGAGTGGCGGCGGCGGCGTT
CTGCCCGCGACGTGAGCCTTGCAGCGGCGAACTGGCGGGACGATGACGAC
AGGCTGGCAGCGGCGACGGTGGCGGCGGGGTGGCGGACAGGCAGTCGGCA
GAGGCGGAGGCAGCGGGGGCTGGGGGCGACGGCTGCCGCATGCGGTGGCT
GGCTATCGGAAACGCTCCGCTGGCGCCAGCAGCGTCAGCGGTGGAGACAA
CGGCAGCGGCAGTATCACTGGTTGTACCAAGAGCTTTCGGCCTTCCCTTT
CTCCGTCTTGCAGGAGGACGATCTCTCATTCGCTATCGGCATCTGATCCA
AGTGATGCCGCGCCTCTTCCCTTCTTCGTGTTCTTTCGCCTGGATTGTCC
ATTCTTGCTTTTCTGTTCTATCTGCGGGCAGGTGGACGGCAAGGTGCGCA
CCGACGTCAACTTCCCGGCGGGCTTCATGGGTGAGTTCAGCCGGCACTTC
ACTTGCCGGCCGCAGCGGTGCCAGCGGCAGGGACAGCGACGGGGGCAAGG
CGGCAGCTTCGGCAGGGTGCGCAGTGTGGACCTTGCGATAGAGGCCGGCG
CCTTTTAGCGGCGGGGCGGCGGTATGCCGCTCTGACTGTCAGGGGTGGCA
TAAGCAGTGACAGTGGCTGCGGCTGCAGGTTCGACAGAGGCAGGCAGGAG
CGGCGAGGAGGATTTGGAGGGGCGCGGCGCAAACGGCGGGCAGTAGCGAG
GTTTGGACGCGATGGGCGGCGGTCTCGGATTTCGTGCTGGGTATGACGGG
GATCCTTCGATGCTTTCTAAGCAATTTCTACTTCCCCCTCCGCTTTTTGC
ATCCTTCTCTTCTCGCGTTATCTGCCGAACGGCATTATACCTGCTCCGTG
TTCATATTGTATCAGACGTGGTGTCGATCGAGAAGTCTTCGGACCAGTTC
CGGCTGCTCTACGACACCAAGGGCCGTTTCGCACTCCACCGCGTCTCCGA
CGAGGAGGCCAAGTACAAGCTCTGCCGCGTCAAGAAGGTAAGCGTTGCTA
GTCAGCAGTTACCGCAGTTGCGATGGCGCCGATTGCGGGAGGAGTTATTT
GAGGTAAAAGGCTTTTCACCGGTTCCTTAAAGAAAGCAGGAAGCGGCGGC
GTCGCCGCGAGGAGCTTTCTGGAGAGATACGGCTTAGAGCAGCGCTGTGC
GTGCAGATGGGCTTCGCATAGTTGCTGCTTTCCGCACCGCAGTCTCGTCG
ATTTTGGGGGGGCTGATAGGAACCTCTCTCGCTCACCTTTCCTTTATTTT
TCTCTCTTCCGTTAATCTTCCCGCTTGTCTTCCGCCCTTTGCCTTTCTGT
TTGTCAGGTGGAGGTGTCGAAGAAGAAGATCCCGTTCCTGGTGACGCACG
ACGGGCGCACGCTGCGCTACCCGGACCCGCTCGTCAAGAAAAACGACACC
ATCAAGGTGGACCTCGAGACGGGCAAGATGGTGGACATCATCAAGTTCGA
GATGGGCAACATGTGCATGATTAACCGCGGACACAATACCGGCCGCGTCG
GCATCATCACCCACGTCGAGCGGTGAGTGCATGATAAAGAGAGAAGAGGA
AAGAACGAGAAGAGTTAACAATTCTGGCTGGCGGTCGCAGCAATGTTCCG
ATGGTTGCGGCAGTGTGGCTTTTTTGCGGCCCGGCCATTTTCGGCTTTCG
ATCTTCCGATTTCCGGTTCCCAATTGCATTGCGTGTCTTTTCTGTGTGTT
GCTGTCGCCCGTGCTTGTCGCGTATTGTTCTCTCCGTCATGACCGAAACT
TGGGGCCCGCTGCGGTTGGAAAAGCCTCCGTGTGCCGTGAGGCAACATCA
CCATACTTGAGTAACCGATGCAACCTAAGCCATTTCTACCGTTGCTCGAA
CCCAAAGCTCCTTCTATTCTTCATCTGCCACTCTTTTGGGCGGGGTCATT
GCGTCATTGCAGGCACCCGGGATCGTTCGACATTGTGTCCGTGAAGGACG
CCACGGGCGCCACCTTCGCCACTCGCCTCCAGAACGTCTTCGTCATCGGA
CAGGTGTGTCCGTTGTCCATTTCTCTTTTTTGCTGTGTTCAGATGGGAGG
GGGAAGGAACAGTCGTGGCTTTTTTCGAGGCTGCCTTCACTTTGCCGGCC
CATCTACATTACCGCTGATCTTCATCGCACCCCATAAACCATTTTCCCTC
CCTGCAATCTCTATTCTCTTCTCCGTGTTTCTCTGATGCCGCTCTTCAGG
GCAACCGGCCGGCGGTCTCGCTGCCGAAGGGCAAGGGCATCAAGCTCTCC
ATCCTCGAGGAGCGAGCCAACAAGAACGCCGCCGCCAACGGCAACTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1519:1775..5372+

>mRNA_P-wetherbeei_contig1519.1.1 ID=mRNA_P-wetherbeei_contig1519.1.1|Name=mRNA_P-wetherbeei_contig1519.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=765bp|location=Sequence derived from alignment at P-wetherbeei_contig1519:1775..5372+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCGGCTGGCGGCGCCGCGGCACTGGATGCTCGGCAAGCTCGAGGG
CATCTGGGCACCCAAGCCATCGTGCGGCCCGCACTCCACCCGGGAGTGCA
TGCCGCTCATCCTGATCGTGCGGAACCGCTTGAAGTACGCGTTGACGAAG
AGCGAGGCCAACATGATCTGCATGCAGCGGCTCGTGAAGGTGGACGGCAA
GGTGCGCACCGACGTCAACTTCCCGGCGGGCTTCATGGACGTGGTGTCGA
TCGAGAAGTCTTCGGACCAGTTCCGGCTGCTCTACGACACCAAGGGCCGT
TTCGCACTCCACCGCGTCTCCGACGAGGAGGCCAAGTACAAGCTCTGCCG
CGTCAAGAAGGTGGAGGTGTCGAAGAAGAAGATCCCGTTCCTGGTGACGC
ACGACGGGCGCACGCTGCGCTACCCGGACCCGCTCGTCAAGAAAAACGAC
ACCATCAAGGTGGACCTCGAGACGGGCAAGATGGTGGACATCATCAAGTT
CGAGATGGGCAACATGTGCATGATTAACCGCGGACACAATACCGGCCGCG
TCGGCATCATCACCCACGTCGAGCGGCACCCGGGATCGTTCGACATTGTG
TCCGTGAAGGACGCCACGGGCGCCACCTTCGCCACTCGCCTCCAGAACGT
CTTCGTCATCGGACAGGGCAACCGGCCGGCGGTCTCGCTGCCGAAGGGCA
AGGGCATCAAGCTCTCCATCCTCGAGGAGCGAGCCAACAAGAACGCCGCC
GCCAACGGCAACTAA
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