mRNA_P-wetherbeei_contig15139.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15139.1.1
Unique NamemRNA_P-wetherbeei_contig15139.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig15139.1.1 vs. uniprot
Match: D8LPS2_ECTSI (Bleomycin hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPS2_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 2.550e-12
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 GDGGYRLMTGQWMDESFVRRVVVRKDALDEKLLPLLTDEPIVLPPWDPMGSLA 159
            G+ GY LMT  W DE ++ +VVV K  LD+ LLPLLTDEP +LP WDPMGSLA
Sbjct:  409 GNKGYFLMTNAWFDE-YLFQVVVNKSLLDKDLLPLLTDEPTMLPAWDPMGSLA 460
[Close]
BLAST of mRNA_P-wetherbeei_contig15139.1.1 vs. uniprot
Match: UPI00106D2F78 (bleomycin hydrolase-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D2F78)

HSP 1 Score: 63.5 bits (153), Expect = 2.030e-10
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 GDGGYRLMTGQWMDESFVRRVVVRKDALDEKLLPLLTDEPIVLPPWDPMGSLA 159
            GD GY +MT +W  E FV  VVV K  + E++L +L  EPIVLPPWDPMG+LA
Sbjct:  453 GDKGYLMMTDEWFSE-FVYEVVVDKKFVPEEILDVLKQEPIVLPPWDPMGALA 504
[Close]
BLAST of mRNA_P-wetherbeei_contig15139.1.1 vs. uniprot
Match: A0A1Y1YNV5_9FUNG (Cysteine proteinase 1, mitochondrial n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YNV5_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 2.770e-10
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 GDGGYRLMTGQWMDESFVRRVVVRKDALDEKLLPLLTDEPIVLPPWDPMGSLA 159
            GD G+  M+ +W DE F  ++V+ K+ + EK+L +L +EP+VLPPWDPMGSLA
Sbjct:  400 GDKGFLSMSDRWFDE-FTYQIVLEKEDIPEKVLEVLKEEPVVLPPWDPMGSLA 451
[Close]
BLAST of mRNA_P-wetherbeei_contig15139.1.1 vs. uniprot
Match: A0A0L0G6T7_9EUKA (Bleomycin hydrolase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G6T7_9EUKA)

HSP 1 Score: 62.8 bits (151), Expect = 3.700e-10
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 GDGGYRLMTGQWMDESFVRRVVVRKDALDEKLLPLLTDEPIVLPPWDPMGSLA 159
            GD GY +MT  W  E FV ++VV K  L+++ +P LT  P VLPPWDPMG+LA
Sbjct:  341 GDKGYHIMTADWFKE-FVYQIVVHKSQLEDEQVPALTATPSVLPPWDPMGTLA 392
[Close]
BLAST of mRNA_P-wetherbeei_contig15139.1.1 vs. uniprot
Match: A0A7J4GR45_9ARCH (Aminopeptidase n=1 Tax=Marine Group III euryarchaeote TaxID=2173149 RepID=A0A7J4GR45_9ARCH)

HSP 1 Score: 57.8 bits (138), Expect = 5.240e-10
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 GDGGYRLMTGQWMDESFVRRVVVRKDALDEKLLPLLTDEPIVLPPWDPMGSLA 159
            G+ G+ +MT  W D+ F+  VV+ K  L +K++ +   EPI LPPWDPMGSLA
Sbjct:    2 GEKGFDIMTDPWFDQ-FMYEVVIHKKHLTKKIIDMYNREPIALPPWDPMGSLA 53
[Close]
BLAST of mRNA_P-wetherbeei_contig15139.1.1 vs. uniprot
Match: UPI00083051DB (C1 family peptidase n=1 Tax=Caviibacter abscessus TaxID=1766719 RepID=UPI00083051DB)

HSP 1 Score: 62.0 bits (149), Expect = 7.070e-10
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 GDGGYRLMTGQWMDESFVRRVVVRKDALDEKLLPLLTDEPIVLPPWDPMGSLA 159
            G+ GY LMT +WMD  F  +VVV K  L E+L  L+  EPIVL PWDPMGSLA
Sbjct:  391 GNKGYFLMTDEWMDR-FTYQVVVNKKYLPEELRKLIEQEPIVLKPWDPMGSLA 442
[Close]
BLAST of mRNA_P-wetherbeei_contig15139.1.1 vs. uniprot
Match: A0A1H9HV97_9LACT (Aminopeptidase n=1 Tax=Granulicatella balaenopterae TaxID=137733 RepID=A0A1H9HV97_9LACT)

HSP 1 Score: 61.6 bits (148), Expect = 9.660e-10
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 GDGGYRLMTGQWMDESFVRRVVVRKDALDEKLLPLLTDEPIVLPPWDPMGSLA 159
            GD G+ +M+ +WMDE +  ++V++KD L E+ L    +EPIVL PWDPMGSLA
Sbjct:  390 GDKGFFVMSDEWMDE-YTYQIVIKKDYLTEEQLKAFNEEPIVLAPWDPMGSLA 441
[Close]
BLAST of mRNA_P-wetherbeei_contig15139.1.1 vs. uniprot
Match: A0A1W9M335_9DELT (Aminopeptidase n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9M335_9DELT)

HSP 1 Score: 61.6 bits (148), Expect = 9.660e-10
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 GDGGYRLMTGQWMDESFVRRVVVRKDALDEKLLPLLTDEPIVLPPWDPMGSLA 159
            GD GY +MT +W DE ++  ++V K  L  +LL  L  EP+VLPPWDPMG+LA
Sbjct:  392 GDKGYMVMTDRWFDE-YLYEIIVSKKKLSPELLKTLDTEPVVLPPWDPMGALA 443
[Close]
BLAST of mRNA_P-wetherbeei_contig15139.1.1 vs. uniprot
Match: UPI0006892C56 (C1 family peptidase n=1 Tax=Alicyclobacillus macrosporangiidus TaxID=392015 RepID=UPI0006892C56)

HSP 1 Score: 61.2 bits (147), Expect = 1.320e-9
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 GDGGYRLMTGQWMDESFVRRVVVRKDALDEKLLPLLTDEPIVLPPWDPMGSLA 159
            G  GY +M+  W DE F+ +VVV+K  L E++  +L +EP+VLPPWDPMGSLA
Sbjct:  403 GQDGYFVMSDAWFDE-FLYQVVVKKKYLPEEVRAVLKEEPVVLPPWDPMGSLA 454
[Close]
BLAST of mRNA_P-wetherbeei_contig15139.1.1 vs. uniprot
Match: A0A356B0J2_9FIRM (Aminopeptidase (Fragment) n=1 Tax=Clostridiales bacterium TaxID=1898207 RepID=A0A356B0J2_9FIRM)

HSP 1 Score: 60.1 bits (144), Expect = 1.330e-9
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 GDGGYRLMTGQWMDESFVRRVVVRKDALDEKLLPLLTDEPIVLPPWDPMGSLA 159
            G  G+ +M+ +W DE ++ +VVV K  LD+K+L L+  EPIVL PWDPMGSLA
Sbjct:  150 GHKGFLVMSDKWFDE-YMYQVVVHKKYLDKKILDLVKQEPIVLKPWDPMGSLA 201
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15139.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPS2_ECTSI2.550e-1264.15Bleomycin hydrolase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
UPI00106D2F782.030e-1058.49bleomycin hydrolase-like n=1 Tax=Dendronephthya gi... [more]
A0A1Y1YNV5_9FUNG2.770e-1052.83Cysteine proteinase 1, mitochondrial n=1 Tax=Basid... [more]
A0A0L0G6T7_9EUKA3.700e-1054.72Bleomycin hydrolase n=1 Tax=Sphaeroforma arctica J... [more]
A0A7J4GR45_9ARCH5.240e-1049.06Aminopeptidase n=1 Tax=Marine Group III euryarchae... [more]
UPI00083051DB7.070e-1060.38C1 family peptidase n=1 Tax=Caviibacter abscessus ... [more]
A0A1H9HV97_9LACT9.660e-1052.83Aminopeptidase n=1 Tax=Granulicatella balaenoptera... [more]
A0A1W9M335_9DELT9.660e-1052.83Aminopeptidase n=1 Tax=Desulfobacteraceae bacteriu... [more]
UPI0006892C561.320e-954.72C1 family peptidase n=1 Tax=Alicyclobacillus macro... [more]
A0A356B0J2_9FIRM1.330e-954.72Aminopeptidase (Fragment) n=1 Tax=Clostridiales ba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15139contigP-wetherbeei_contig15139:1209..1581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LPS2
Preferred nameBLMH
PFAMsPeptidase_C1_2
Model size159
Max annot lvl2759|Eukaryota
KEGG koko:K01372
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000096,GO:0000098,GO:0000122,GO:0000209,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003729,GO:0003824,GO:0004175,GO:0004177,GO:0004180,GO:0004197,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006082,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006520,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008238,GO:0009056,GO:0009063,GO:0009636,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016054,GO:0016567,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0036211,GO:0042221,GO:0042493,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043418,GO:0043436,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044273,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046395,GO:0046677,GO:0048519,GO:0048523,GO:0050667,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0070011,GO:0070647,GO:0071704,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1902679,GO:1903506,GO:1903507,GO:1990837,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue8.56e-11
EggNOG OGsCOG3579@1|root,KOG4128@2759|Eukaryota
EC3.4.22.40
Descriptionhomocysteine catabolic process
Cds size138
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186046.185256-CDS-P-wetherbeei_contig15139:1208..13071683186046.185256-CDS-P-wetherbeei_contig15139:1208..1307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15139 1209..1307 -
1683186046.199005-CDS-P-wetherbeei_contig15139:1521..15601683186046.199005-CDS-P-wetherbeei_contig15139:1521..1560Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15139 1522..1560 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186046.207701-UTR-P-wetherbeei_contig15139:1560..15811683186046.207701-UTR-P-wetherbeei_contig15139:1560..1581Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15139 1561..1581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15139.1.1prot_P-wetherbeei_contig15139.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15139 1209..1560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15139.1.1

>prot_P-wetherbeei_contig15139.1.1 ID=prot_P-wetherbeei_contig15139.1.1|Name=mRNA_P-wetherbeei_contig15139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=46bp
MTGQWMDESFVRRVVVRKDALDEKLLPLLTDEPIVLPPWDPMGSLA
back to top

mRNA from alignment at P-wetherbeei_contig15139:1209..1581-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15139.1.1 ID=mRNA_P-wetherbeei_contig15139.1.1|Name=mRNA_P-wetherbeei_contig15139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=373bp|location=Sequence derived from alignment at P-wetherbeei_contig15139:1209..1581- (Phaeothamnion wetherbeei SAG_119_79)
GGCGACGGCGGCTACCGCCTGATGACTGGACAATGGATGGACGAGTCCTT
TGTCAGGCGAGTGTATAGTATTGTCCCCGCTCCATTCAGCTCTCCTCTGT
TCGAGCACTTTCTTCACACTTTCATCCAGAGGTCTGTGAGTCTTTCTCTG
TGTCGTGGGAAAGTAGGCAAAGCTGTACACCTCTCAACCGACGTGTCCTG
ATGCAAAATGCCGTTACGTGCGCTTCTGCTTCCCTTGCTCTGCCTGCCCT
GCCTCGGCTGCTCTGGCGACGCAGGTGGTGGTGCGAAAGGACGCGCTCGA
CGAGAAGCTCCTTCCGCTGCTGACTGACGAGCCGATCGTCCTGCCGCCCT
GGGACCCAATGGGCAGCCTCGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15139:1209..1581-

>mRNA_P-wetherbeei_contig15139.1.1 ID=mRNA_P-wetherbeei_contig15139.1.1|Name=mRNA_P-wetherbeei_contig15139.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig15139:1209..1581- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGGACAATGGATGGACGAGTCCTTTGTCAGGCGAGTGGTGGTGCG
AAAGGACGCGCTCGACGAGAAGCTCCTTCCGCTGCTGACTGACGAGCCGA
TCGTCCTGCCGCCCTGGGACCCAATGGGCAGCCTCGCG
back to top