mRNA_P-wetherbeei_contig15134.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15134.1.1
Unique NamemRNA_P-wetherbeei_contig15134.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15134.1.1 vs. uniprot
Match: D8LQI2_ECTSI (NAD(P)H-Nitrate reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI2_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 2.320e-27
Identity = 49/78 (62.82%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    1 PAAANCYTMEEVAEHDSAEDCWIVVDGHVYDVTPFLKDHPGGAESITLCAGEDATEEFNALHSDKARAMLADYLIGSV 234
            P+    + +++V +HD+ +DCWI VDG VYDVT FL DHPGG ESIT+ AG+D++EEFNALHSDKARAML DY IG +
Sbjct:  475 PSNGKSFNLKDVQKHDNEDDCWIAVDGKVYDVTDFLDDHPGGGESITISAGQDSSEEFNALHSDKARAMLEDYYIGDL 552          
BLAST of mRNA_P-wetherbeei_contig15134.1.1 vs. uniprot
Match: A0A392VVX6_9FABA (Nitrate reductase (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392VVX6_9FABA)

HSP 1 Score: 100 bits (250), Expect = 1.980e-26
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   22 TMEEVAEHDSAEDCWIVVDGHVYDVTPFLKDHPGGAESITLCAGEDATEEFNALHSDKARAMLADYLIG 228
            TM EV +H++++  WI+VDGH+YD T +LKDHPGG +SI + AG D TEEF A+HSDKA+ ML DYLIG
Sbjct:    1 TMSEVEKHNNSDSAWIIVDGHIYDCTHYLKDHPGGVDSILINAGTDCTEEFEAIHSDKAKKMLEDYLIG 69          
BLAST of mRNA_P-wetherbeei_contig15134.1.1 vs. uniprot
Match: E1ZNI8_CHLVA (Nitrate reductase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZNI8_CHLVA)

HSP 1 Score: 110 bits (275), Expect = 2.050e-26
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 PAAANCYTMEEVAEHDSAEDCWIVVDGHVYDVTPFLKDHPGGAESITLCAGEDATEEFNALHSDKARAMLADYLIGSVATE 243
            P  A  +TM EV +H + + CW VVDG VYD TPFLK+HPGGA+SI L AG DA++EFNA+HS KA+AMLADY IG +  E
Sbjct:  501 PPGARTFTMAEVEQHATKDSCWFVVDGKVYDSTPFLKEHPGGADSILLVAGTDASDEFNAIHSAKAKAMLADYYIGELVEE 581          
BLAST of mRNA_P-wetherbeei_contig15134.1.1 vs. uniprot
Match: D6BJI2_CHLVU (Nitrate reductase n=1 Tax=Chlorella vulgaris TaxID=3077 RepID=D6BJI2_CHLVU)

HSP 1 Score: 109 bits (273), Expect = 3.830e-26
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    4 AAANCYTMEEVAEHDSAEDCWIVVDGHVYDVTPFLKDHPGGAESITLCAGEDATEEFNALHSDKARAMLADYLIGSVATE 243
            + A  YTM EV +HD+ E  W V DG VYD TPFLK+HPGGA+SI L AG DAT+EF+A+HS+KA+ ML DY IG +ATE
Sbjct:  501 SGAKLYTMAEVEKHDTKESAWFVSDGKVYDATPFLKEHPGGADSILLVAGTDATDEFHAIHSNKAKKMLLDYYIGDLATE 580          
BLAST of mRNA_P-wetherbeei_contig15134.1.1 vs. uniprot
Match: A0A150GIU5_GONPE (Nitrate reductase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GIU5_GONPE)

HSP 1 Score: 109 bits (272), Expect = 5.220e-26
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1
Query:   19 YTMEEVAEHDSAEDCWIVVDGHVYDVTPFLKDHPGGAESITLCAGEDATEEFNALHSDKARAMLADYLIGSV 234
            YTMEEVAEH++ E CW V +G VYD TP+L DHPGGAESI + AG DAT+EFN++HS KA+AMLA Y IG +
Sbjct:  501 YTMEEVAEHNTEESCWFVHEGKVYDATPYLNDHPGGAESILITAGADATDEFNSIHSSKAKAMLAQYYIGDL 572          
BLAST of mRNA_P-wetherbeei_contig15134.1.1 vs. uniprot
Match: A0A433Q854_9FUNG (Nitrate reductase [NADPH] n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q854_9FUNG)

HSP 1 Score: 109 bits (272), Expect = 5.230e-26
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 1
Query:   19 YTMEEVAEHDSAEDCWIVVDGHVYDVTPFLKDHPGGAESITLCAGEDATEEFNALHSDKARAMLADYLIGSV 234
            +T+E+VA+HD  +DCWI+VDG VYD T FL+DHPGGA+SI + AG D TEEFNA+HS KA+ ML +YLIGS+
Sbjct:  551 FTIEDVAKHDKEDDCWIIVDGRVYDCTKFLEDHPGGADSILINAGIDCTEEFNAIHSTKAQGMLTEYLIGSI 622          
BLAST of mRNA_P-wetherbeei_contig15134.1.1 vs. uniprot
Match: NIA_CHLVU (Nitrate reductase [NADH] (Fragment) n=1 Tax=Chlorella vulgaris TaxID=3077 RepID=NIA_CHLVU)

HSP 1 Score: 105 bits (263), Expect = 8.650e-26
Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    1 PAAANCYTMEEVAEHDSAEDCWIVVDGHVYDVTPFLKDHPGGAESITLCAGEDATEEFNALHSDKARAMLADYLIGSVATE 243
            PA A  +TM EV  H + E  W VVDG VYD TPFLKDHPGGA+SI L AG DAT+EFNA+HS KA+  L +Y IG +A E
Sbjct:  213 PAGAKSFTMAEVETHTTMESAWFVVDGKVYDATPFLKDHPGGADSILLVAGIDATDEFNAIHSLKAKKQLLEYYIGELAEE 293          
BLAST of mRNA_P-wetherbeei_contig15134.1.1 vs. uniprot
Match: UPI00053C7726 (nitrate reductase [NADH] 2 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C7726)

HSP 1 Score: 108 bits (270), Expect = 9.740e-26
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 1
Query:    7 AANCYTMEEVAEHDSAEDCWIVVDGHVYDVTPFLKDHPGGAESITLCAGEDATEEFNALHSDKARAMLADYLIGSVAT 240
            A+  ++M EV +H+SAE CWI+V GHVYD T FLKDHPGG++SI + AG D TEEF+A+HSDKA+ ML DY IG + T
Sbjct:  537 ASKMFSMSEVKKHNSAESCWIIVHGHVYDCTRFLKDHPGGSDSILINAGSDCTEEFDAIHSDKAKKMLEDYRIGELIT 614          
BLAST of mRNA_P-wetherbeei_contig15134.1.1 vs. uniprot
Match: A0A199UA85_MANES (Uncharacterized protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A199UA85_MANES)

HSP 1 Score: 106 bits (264), Expect = 1.700e-25
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    7 AANCYTMEEVAEHDSAEDCWIVVDGHVYDVTPFLKDHPGGAESITLCAGEDATEEFNALHSDKARAMLADYLIGSV 234
            ++N ++M EV +H+SA+ CWI+V GHVYD T FLKDHPGG +SI + AG D TEEF+A+HSDKA+ ML DY IG +
Sbjct:    4 SSNTFSMAEVKKHNSADSCWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGEL 79          
BLAST of mRNA_P-wetherbeei_contig15134.1.1 vs. uniprot
Match: A0A5J4XQJ5_9CHLO (Nitrate reductase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XQJ5_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 3.380e-25
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 1
Query:   19 YTMEEVAEHDSAEDCWIVVDGHVYDVTPFLKDHPGGAESITLCAGEDATEEFNALHSDKARAMLADYLIGSV 234
            YT+EEV +HDS ED W V DG VYD T FL  HPGGAESI +  G+DATEEFNA+HS KA+AMLADY+IG +
Sbjct:  512 YTLEEVEKHDSREDVWFVHDGKVYDGTKFLSAHPGGAESILMVGGQDATEEFNAIHSSKAKAMLADYMIGLI 583          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15134.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQI2_ECTSI2.320e-2762.82NAD(P)H-Nitrate reductase n=2 Tax=Ectocarpus TaxID... [more]
A0A392VVX6_9FABA1.980e-2662.32Nitrate reductase (Fragment) n=1 Tax=Trifolium med... [more]
E1ZNI8_CHLVA2.050e-2661.73Nitrate reductase n=1 Tax=Chlorella variabilis Tax... [more]
D6BJI2_CHLVU3.830e-2662.50Nitrate reductase n=1 Tax=Chlorella vulgaris TaxID... [more]
A0A150GIU5_GONPE5.220e-2666.67Nitrate reductase n=1 Tax=Gonium pectorale TaxID=3... [more]
A0A433Q854_9FUNG5.230e-2665.28Nitrate reductase [NADPH] n=2 Tax=Jimgerdemannia f... [more]
NIA_CHLVU8.650e-2661.73Nitrate reductase [NADH] (Fragment) n=1 Tax=Chlore... [more]
UPI00053C77269.740e-2661.54nitrate reductase [NADH] 2 n=1 Tax=Tarenaya hassle... [more]
A0A199UA85_MANES1.700e-2560.53Uncharacterized protein n=1 Tax=Manihot esculenta ... [more]
A0A5J4XQJ5_9CHLO3.380e-2568.06Nitrate reductase n=1 Tax=Trebouxia sp. A1-2 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15134contigP-wetherbeei_contig15134:168..410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQI2
Preferred nameNIA1
PFAMsCyt-b5,FAD_binding_6,Mo-co_dimer,NAD_binding_1,Oxidored_molyb
Model size243
Max annot lvl2759|Eukaryota
KEGG rclassRC00168,RC02812
KEGG koko:K00326,ko:K00387,ko:K10534
KEGG ReactionR00100,R00533,R00794,R00796
KEGG Pathwayko00520,ko00910,ko00920,ko01100,ko01120,map00520,map00910,map00920,map01100,map01120
KEGG ModuleM00531
Hectar predicted targeting categoryother localisation
GOsGO:0001505,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005829,GO:0005886,GO:0006082,GO:0006807,GO:0006809,GO:0008150,GO:0008152,GO:0008940,GO:0009058,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009608,GO:0009610,GO:0009620,GO:0009628,GO:0009703,GO:0009987,GO:0016020,GO:0016491,GO:0016661,GO:0017144,GO:0034641,GO:0042126,GO:0042128,GO:0042133,GO:0042136,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046209,GO:0046857,GO:0050896,GO:0051704,GO:0051707,GO:0055114,GO:0065007,GO:0065008,GO:0071704,GO:0071941,GO:0071944,GO:0072593,GO:1903409,GO:2001057
Exons1
Evalue2.12e-26
EggNOG OGsCOG0543@1|root,COG2041@1|root,COG5274@1|root,KOG0534@2759|Eukaryota,KOG0535@2759|Eukaryota,KOG0537@2759|Eukaryota
EC1.6.2.2,1.7.1.1,1.7.1.2,1.7.1.3,1.8.3.1
Descriptionheme binding
Cds size219
COG categoryCI
BiGG ReactioniRC1080.CRv4_Au5_s9_g15693_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.9633675-UTR-P-wetherbeei_contig15134:167..1911683186045.9633675-UTR-P-wetherbeei_contig15134:167..191Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15134 168..191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.9759316-CDS-P-wetherbeei_contig15134:191..4101683186045.9759316-CDS-P-wetherbeei_contig15134:191..410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15134 192..410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15134.1.1prot_P-wetherbeei_contig15134.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15134 192..410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15134.1.1

>prot_P-wetherbeei_contig15134.1.1 ID=prot_P-wetherbeei_contig15134.1.1|Name=mRNA_P-wetherbeei_contig15134.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
MEEVAEHDSAEDCWIVVDGHVYDVTPFLKDHPGGAESITLCAGEDATEEF
NALHSDKARAMLADYLIGSVATE
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mRNA from alignment at P-wetherbeei_contig15134:168..410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15134.1.1 ID=mRNA_P-wetherbeei_contig15134.1.1|Name=mRNA_P-wetherbeei_contig15134.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig15134:168..410+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGGCGGCGAACTGCTACACGATGGAGGAGGTGGCGGAGCACGACAG CGCGGAGGACTGCTGGATCGTCGTCGACGGCCATGTCTACGACGTGACGC CCTTTCTGAAGGACCACCCGGGCGGGGCTGAGTCTATCACGCTCTGTGCC GGGGAGGACGCCACCGAGGAGTTCAACGCGCTGCACTCCGACAAGGCGCG CGCCATGCTCGCCGACTACCTCATCGGCAGCGTTGCCACTGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15134:168..410+

>mRNA_P-wetherbeei_contig15134.1.1 ID=mRNA_P-wetherbeei_contig15134.1.1|Name=mRNA_P-wetherbeei_contig15134.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig15134:168..410+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGAGGTGGCGGAGCACGACAGCGCGGAGGACTGCTGGATCGTCGT
CGACGGCCATGTCTACGACGTGACGCCCTTTCTGAAGGACCACCCGGGCG
GGGCTGAGTCTATCACGCTCTGTGCCGGGGAGGACGCCACCGAGGAGTTC
AACGCGCTGCACTCCGACAAGGCGCGCGCCATGCTCGCCGACTACCTCAT
CGGCAGCGTTGCCACTGAG
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