mRNA_P-wetherbeei_contig15128.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15128.1.1
Unique NamemRNA_P-wetherbeei_contig15128.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15128.1.1 vs. uniprot
Match: D7FNW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW1_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 3.960e-48
Identity = 147/382 (38.48%), Postives = 199/382 (52.09%), Query Frame = 1
Query:    1 EETFRKSGGLRQELKALADGLGGGQLIYGPPLEEAEQRAALLLCGVDLETALDAQGKAALRRAVLDGVERLRRATHDESPSLLRALRRAAADLAGVAGLPAQLTHHLAAAAAELADIIARIRYAGDDNDDDGSGSXXXXXXXRXXXXXXXXXXXXXXSTRGGGAPSV--RSASRTAMTACGGXXXXXX------------------------AGGWESFVNVDMPAVRAVQKRLGLLAGASDLTDGVKARLRNVAEDLARQNFCNAAVDDAVEGATAAPLAAHDAAQRELADHALFVMEDRAAAAAAATERMCTLWGAAAAAVAEHGKRTAAIDKIALDEMFDCKEDFRLADEDREAEMAAATKRLRQAPNEHQLNATFEEV 1068
            E+  RK+GGL+ EL AL  G+   +++Y   L  A +R  L+LCGVDLE  LD QGKA +RR + D VERLR+A   + PS+L A+RR AADL+ V  +   L   L  A  ++  ++  I   GD +    SG                         RGGGA SV  R + R+ + +  G XXXXX                         GGWES + +DM  VRAVQ+RLG+LA ASDL++  K  LR+    L ++  CN AVD  V       L A  + Q  L + AL  M+ RA +  A  ER+C+ + A A  V  H +  A ID+     MF+CKEDFRLADEDRE E+  +T R+R A +E++L  +F  V
Sbjct:  472 EDFMRKAGGLKHELLALVQGMRSPEIMYDSWLSVAIERTDLVLCGVDLERVLDKQGKAGMRRGLADSVERLRKAPKSDIPSILDAMRRQAADLSQVVDIDPLLAACLDHATEDIDRVVDTIERRGDSD----SGG------------------------RGGGAASVGSRVSKRSGVGSSRGKXXXXXXXXXXXXXXXXXXXXXPRRSTTSRGGGWESEIEIDMLQVRAVQRRLGMLACASDLSEEFKEVLRSTRAALEQKRSCNKAVDLVVSQEADGELTARLSEQSLLMERALRSMDARAQSLHACAERVCSFFAAMALEVETHEEIEAKIDESGEQRMFECKEDFRLADEDREDEVKTSTSRVRMAADENELETSFARV 825          
BLAST of mRNA_P-wetherbeei_contig15128.1.1 vs. uniprot
Match: A0A6H5KM06_9PHAE (DUF4455 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM06_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 4.210e-30
Identity = 115/327 (35.17%), Postives = 159/327 (48.62%), Query Frame = 1
Query:    1 EETFRKSGGLRQELKALADGLGGGQLIYGPPLEEAEQRAALLLCGVDLETALDAQGKAALRRAVLDGVERLRRATHDESPSLLRALRRAAADLAGVAGLPAQLTHHLAAAAAELADIIARIRYAGDDNDDDGSGSXXXXXXXRXXXXXXXXXXXXXXSTRGGGAPSVRS--ASRTAMTACGGXXXXXXA----GGWESFVNVDMPAVRAVQKRLGLLAGASDLTDGVKARLRNVAEDLARQNFCNAAVDDAV------------EGATAAPLAAHDAAQRELADHALFVMEDRAAAAAAATERMCTLWGAAAAAVAEHGKRTAAIDK 927
            E+  RK+GGL+ EL AL  G+   +++Y   +  A +R  L+LCGVDLE  LD QGKA +RR + D VERLR+A     PS+L A+RR AADL+ V  +   L   L  A  ++  ++  I   GD +    SG                         RGGGA SV S  + R+ M +  G           GGWES + +DM     +Q+RLG+LA ASDL++  K  LR+    L ++  CN AVD  V            E      LAA  + Q  L + AL  M+ RA +     ER+C+ + A A  V  H +  A ID+
Sbjct:  402 EDFMRKAGGLKHELLALVQGMRSPEIMYDSWVSVAIERTDLVLCGVDLERVLDKQGKAGMRRGLADSVERLRKAPKSGIPSILDAMRRQAADLSQVVDIDPMLAACLDHATEDIDRVVDTIERRGDSD----SGG------------------------RGGGAASVGSQVSKRSGMGSSRGKGPGRLTTSRGGGWESEIEIDM-----LQRRLGMLACASDLSEEFKEVLRSTRAALEQKRSCNKAVDLVVSEESNHICNVTIEHQADGELAARFSEQSLLMERALRSMDARAQSLHTCAERVCSFFAAVALEVETHEEIEANIDE 695          
BLAST of mRNA_P-wetherbeei_contig15128.1.1 vs. uniprot
Match: A0A7S3Y9X5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9X5_HETAK)

HSP 1 Score: 101 bits (251), Expect = 1.220e-21
Identity = 65/164 (39.63%), Postives = 93/164 (56.71%), Query Frame = 1
Query:  568 WESFVNVDMPAVRAVQKRLGLLAGASDLTDGVKARLRNVAEDLARQNFCNAAVDDAVEGATAAPLAAHDAAQRELADHALFVMEDRAAAAAAATERMCTLWGAAAAAVAEHGKRTAAIDKIALDEMFDCKEDFRLADEDREAEMAAATKRLRQAPNEHQLNATF 1059
            WE+   +D+PAVR VQ+R+GLL  A +L    +  LR     L ++  CN AVD AV+GA A P+ A D   R LA  AL  +  RA       +R+C  +  AA  VA H +    +D+ A DE+FD +E+ R+   DRE  +AAA +R+R+A +E +L   F
Sbjct:    9 WEA-APLDLPAVRGVQRRVGLLVAACELPPAAQQDLRAALRGLGQKARCNRAVDRAVQGAAAGPIEARDGEMRALAGEALRALNLRAFHLRTVADRVCAFFAGAAQVVAAHLRFEGELDEAAADELFDAREEHRVELVDREEALAAALQRVRRAADEEELAGAF 171          
BLAST of mRNA_P-wetherbeei_contig15128.1.1 vs. uniprot
Match: A0A225VCP4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VCP4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.070e-7
Identity = 70/247 (28.34%), Postives = 107/247 (43.32%), Query Frame = 1
Query:    1 EETFRKSGGLRQELKALADGLGGGQLIYGPPLEEAEQRAALLLCGVDLETALDAQGKAALRRAVLDGVERLRRATHDESPSLLRALRRAAADLAGVAGLPAQLTHHLAAAAAELADIIARIRYAGDDNDDDGSGSXXXXXXXRXXXXXXXXXXXXXXSTRGGGAPSVRSASRTAMTACGGXXXXXXAGGWESFVN-VDMPAVRAVQKRLGLLAGASDLTDGVKARLRNVAEDLARQNFCNAAVDDAV 738
            E+ FR +GGL+ EL  L   L    LIY   LE       +LL  + L++ ++ QGK A ++AV   +E+LR+A  +E  ++L +L+     L  +  + A          AEL+DI+A++                                    S     A    S S  A  A  G          ES  N VD+ A+R VQ+RLG+L  AS+L+   +  L+ +A+ LA Q   N  VD+ +
Sbjct:  311 EDFFRAAGGLKTELDTLVKQLCVEDLIYKTNLEPMVSSLEILLSALPLKSVMEKQGKEAEQKAVETTLEKLRKAAKNEIMAILPSLQTQILMLMNIDDMSANFK-------AELSDIMAQL-------------DQIILEYGSLPSISADAPSEKTFSRTPSIAVLANSKSMKASAAMIGESSSSNNKPSESNGNIVDLQAIRKVQRRLGMLVYASELSAPWQQHLQFIADQLALQTKANGIVDEVI 537          
BLAST of mRNA_P-wetherbeei_contig15128.1.1 vs. uniprot
Match: A0A662WX38_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WX38_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.440e-7
Identity = 74/268 (27.61%), Postives = 107/268 (39.93%), Query Frame = 1
Query:    1 EETFRKSGGLRQELKALADGLGGGQLIYGPPLEEAEQRAALLLCGVDLETALDAQGKAALRRAVLDGVERLRRATHDESPSLLRALRRAAADLAGVAGLPAQLTHHLAAAAAELADIIARIRYAGDDNDDDG--------------------SGSXXXXXXXRXXXXXXXXXXXXXXSTRGGGAPSVRSASRTAMT--ACGGXXXXXXAGGWESFVNVDMPAVRAVQKRLGLLAGASDLTDGVKARLRNVAEDLARQNFCNAAVDDAV 738
            E+ FR +GGLR EL  LA  L    LIY   LE   +   +LL  + LE  +  +GK A R+AV   +ER+R+A+  E  +LL  L+     L  +  + A     +    A+L  II     + +  D                       +G+       R              S   GG P+  S    A T  +C G               VD  A+R VQ+RLG L  AS+L+  ++  L+ + E L  Q   N  VD A+
Sbjct:  551 EDLFRVAGGLRAELDILAKRLNVADLIYSASLEPLVKVVGILLSALPLEGVMATRGKEAGRKAVQATLERIRKASKLEIMALLPPLQAQILPLRNLDEMGATFKAEVEEIMAQLDAIIQGCGASSESTDSTALATLTTTCSSGPSASEPSSTAGALAGRTQLRPPAGATPESSFRRSSVSIGGDPTATSKPCDASTNQSCSGGV-------------VDFQAIRKVQRRLGTLVYASELSQPLQQHLQFILEQLLVQANANLVVDRAI 805          
BLAST of mRNA_P-wetherbeei_contig15128.1.1 vs. uniprot
Match: A0A662XLB5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XLB5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.810e-7
Identity = 75/271 (27.68%), Postives = 109/271 (40.22%), Query Frame = 1
Query:    1 EETFRKSGGLRQELKALADGLGGGQLIYGPPLEEAEQRAALLLCGVDLETALDAQGKAALRRAVLDGVERLRRATHDESPSLLRALRRAAADLAGVAGLPAQLTHHLAAAAAELADIIARIRYAGDDNDDDGS-----------------------GSXXXXXXXRXXXXXXXXXXXXXXSTRGGGAPSV--RSASRTAMTACGGXXXXXXAGGWESFVNVDMPAVRAVQKRLGLLAGASDLTDGVKARLRNVAEDLARQNFCNAAVDDAV 738
            E+ FR +GGLR EL  LA  L    LIY   LE   +   +LL  + LE  +  QGK A R+AV   +ER+R+A+  E  +LL  L+   A +  +  L    T   A   A +A + A I+  G   +   S                       G+       R              S   GG P+   +     A  +C G               VD  A+R VQ+RLG+L  AS+L+  ++  L+ + + L  Q   N  VD A+
Sbjct:  676 EDLFRVAGGLRAELDILAKRLNVADLIYSANLEPLVKLVEILLSALPLEGVMATQGKEAGRKAVQATLERIRKASKLEIMALLPPLQ---AQVLALRNLDEMGTTFKAEVEAVMAQLDAIIQECGASLESTASTALTALTTACGSEPNAIEPSSTAGALAGRTQLRPPSGAAPESSFRRSSVSIGGDPTATNKPCDTNATQSCSGGV-------------VDFQAIRKVQRRLGILVYASELSPPLQQHLQFILKQLLVQANANFVVDRAI 930          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15128.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FNW1_ECTSI3.960e-4838.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM06_9PHAE4.210e-3035.17DUF4455 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3Y9X5_HETAK1.220e-2139.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A225VCP4_9STRA1.070e-728.34Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A662WX38_9STRA2.440e-727.61Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662XLB5_9STRA5.810e-727.68Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15128contigP-wetherbeei_contig15128:32..1598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNW1
Preferred nameCCDC180
PFAMsDUF4455,DUF4456,RBP_receptor
Model size1068
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.5e-49
EggNOG OGs2CN0H@1|root,2QT47@2759|Eukaryota
DescriptionDomain of unknown function (DUF4455)
Cds size1068
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.4811835-CDS-P-wetherbeei_contig15128:31..1421683186045.4811835-CDS-P-wetherbeei_contig15128:31..142Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15128 32..142 -
1683186045.4959543-CDS-P-wetherbeei_contig15128:488..9821683186045.4959543-CDS-P-wetherbeei_contig15128:488..982Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15128 489..982 -
1683186045.5100017-CDS-P-wetherbeei_contig15128:1135..15981683186045.5100017-CDS-P-wetherbeei_contig15128:1135..1598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15128 1136..1598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15128.1.1prot_P-wetherbeei_contig15128.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15128 32..1598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15128.1.1

>prot_P-wetherbeei_contig15128.1.1 ID=prot_P-wetherbeei_contig15128.1.1|Name=mRNA_P-wetherbeei_contig15128.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=356bp
EETFRKSGGLRQELKALADGLGGGQLIYGPPLEEAEQRAALLLCGVDLET
ALDAQGKAALRRAVLDGVERLRRATHDESPSLLRALRRAAADLAGVAGLP
AQLTHHLAAAAAELADIIARIRYAGDDNDDDGSGSDSGGGGGRSGGRSGR
AGAHRGRSTRGGGAPSVRSASRTAMTACGGGGGGSGAGGWESFVNVDMPA
VRAVQKRLGLLAGASDLTDGVKARLRNVAEDLARQNFCNAAVDDAVEGAT
AAPLAAHDAAQRELADHALFVMEDRAAAAAAATERMCTLWGAAAAAVAEH
GKRTAAIDKIALDEMFDCKEDFRLADEDREAEMAAATKRLRQAPNEHQLN
ATFEEV
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mRNA from alignment at P-wetherbeei_contig15128:32..1598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15128.1.1 ID=mRNA_P-wetherbeei_contig15128.1.1|Name=mRNA_P-wetherbeei_contig15128.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1567bp|location=Sequence derived from alignment at P-wetherbeei_contig15128:32..1598- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAAACGTTCCGGAAGTCGGGCGGCCTCCGGCAGGAGCTTAAGGCATT GGCAGACGGCCTCGGCGGCGGCCAGCTCATCTACGGGCCGCCGCTGGAGG AAGCCGAGCAGCGGGCGGCGCTGCTGCTGTGCGGCGTCGACTTGGAGACG GCGCTGGATGCGCAGGGCAAGGCGGCCTTGCGCCGGGCGGTCCTTGACGG GGTCGAGAGGCTACGGCGGGCGACACACGACGAGTCGCCGTCGCTGCTGC GCGCGCTGCGGCGGGCGGCGGCGGACCTGGCGGGCGTGGCTGGGTTGCCG GCGCAGCTGACGCACCACCTGGCGGCCGCCGCTGCCGAGCTTGCCGACAT TATCGCCCGTATCCGCTACGCCGGCGACGACAACGATGATGACGGCAGCG GCAGCGACAGCGGCGGCGGCGGTGGCCGCAGCGGCGGCCGCAGCGGCCGC GCCGGCGCGCATCGTTCCGGCGGCGGTCCGGGCTCGGTGTCGGCCCGCAG CCGCCACAGCAATGCTGTCTCATCCCGGTCGCCAAAGCACGGTCCGCTGT CGGCAGTGTCCCCGCCGGGGTCGTCGTCACCGTCGCCAGGCCCGCGCGTC ATCGCTCGCTCCTCAGGTGGCCGCTCAACACGCGGCGGCGGCGCGCCTTC GGTGCGCAGTGCTTCCCGCACGGCAATGACCGCCTGCGGCGGTGGCGGCG GCGGCAGCGGCGCTGGCGGCTGGGAGAGTTTCGTGAATGTCGACATGCCG GCGGTGCGCGCCGTCCAGAAACGGCTGGGGTTGCTGGCCGGCGCCAGCGA CCTGACGGACGGCGTCAAAGCGCGGCTGCGCAACGTGGCAGAAGACTTGG CGCGGCAGAATTTCTGCAACGCCGCCGTCGACGATGCGGTCGAGGGGGCG ACGGCGGCGCCACTGGCGGCGCACGACGCGGCGCAGCGGGAGCTGGCCGA CCACGCGCTGTTTGTCATGGAGGACCGTGCGGCGGCGGCGGCGGCGGCAA CAGAGCGGATGTGCACACTGTGGGGCGCGGCGGCGGCGGCGGTGGCGGAG CACGGGAAGCGAACGGCCGCCATCGACAAGATCGCCCTCGATGAGATGTT TGACTGCAAGGTGAAGAGGGAGATGGGTGAGGGGGCGACAGTTGCGACTA ATAGGCATTAGCGAACTACCTGTTTTGGCCGTTCTGAGTTTGTTGTGCTT CTCTGAAAGGAAGGATCGGAAACTCTCCCGAGGCACGGCTGTGGCCTTGA GGAAAACGTAGTGAGGCGTGGCTGCTCTACTGCAATCGTCCAAACGTCCC CTCAACTTTCTCATTTTCTCACCCTTTTTGATCTGCTACCCACTACCGGC ACGCTGTGGCGACGGCGGCGGCTACTGTCTGCTGCCGCCGGCGGCGGCCG CGATGATGACGGCGGTGGCGGCGTACGACGGCACTTGGCGCTGACTGGCG GTTCAGGAGGACTTTCGGCTGGCGGACGAAGACCGCGAGGCGGAGATGGC GGCGGCGACGAAGCGGCTGCGGCAGGCGCCCAACGAGCACCAACTCAATG CCACCTTTGAGGAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15128:32..1598-

>mRNA_P-wetherbeei_contig15128.1.1 ID=mRNA_P-wetherbeei_contig15128.1.1|Name=mRNA_P-wetherbeei_contig15128.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1068bp|location=Sequence derived from alignment at P-wetherbeei_contig15128:32..1598- (Phaeothamnion wetherbeei SAG_119_79)
GAGGAAACGTTCCGGAAGTCGGGCGGCCTCCGGCAGGAGCTTAAGGCATT
GGCAGACGGCCTCGGCGGCGGCCAGCTCATCTACGGGCCGCCGCTGGAGG
AAGCCGAGCAGCGGGCGGCGCTGCTGCTGTGCGGCGTCGACTTGGAGACG
GCGCTGGATGCGCAGGGCAAGGCGGCCTTGCGCCGGGCGGTCCTTGACGG
GGTCGAGAGGCTACGGCGGGCGACACACGACGAGTCGCCGTCGCTGCTGC
GCGCGCTGCGGCGGGCGGCGGCGGACCTGGCGGGCGTGGCTGGGTTGCCG
GCGCAGCTGACGCACCACCTGGCGGCCGCCGCTGCCGAGCTTGCCGACAT
TATCGCCCGTATCCGCTACGCCGGCGACGACAACGATGATGACGGCAGCG
GCAGCGACAGCGGCGGCGGCGGTGGCCGCAGCGGCGGCCGCAGCGGCCGC
GCCGGCGCGCATCGTGGCCGCTCAACACGCGGCGGCGGCGCGCCTTCGGT
GCGCAGTGCTTCCCGCACGGCAATGACCGCCTGCGGCGGTGGCGGCGGCG
GCAGCGGCGCTGGCGGCTGGGAGAGTTTCGTGAATGTCGACATGCCGGCG
GTGCGCGCCGTCCAGAAACGGCTGGGGTTGCTGGCCGGCGCCAGCGACCT
GACGGACGGCGTCAAAGCGCGGCTGCGCAACGTGGCAGAAGACTTGGCGC
GGCAGAATTTCTGCAACGCCGCCGTCGACGATGCGGTCGAGGGGGCGACG
GCGGCGCCACTGGCGGCGCACGACGCGGCGCAGCGGGAGCTGGCCGACCA
CGCGCTGTTTGTCATGGAGGACCGTGCGGCGGCGGCGGCGGCGGCAACAG
AGCGGATGTGCACACTGTGGGGCGCGGCGGCGGCGGCGGTGGCGGAGCAC
GGGAAGCGAACGGCCGCCATCGACAAGATCGCCCTCGATGAGATGTTTGA
CTGCAAGGAGGACTTTCGGCTGGCGGACGAAGACCGCGAGGCGGAGATGG
CGGCGGCGACGAAGCGGCTGCGGCAGGCGCCCAACGAGCACCAACTCAAT
GCCACCTTTGAGGAGGTG
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