mRNA_P-wetherbeei_contig15125.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15125.2.2
Unique NamemRNA_P-wetherbeei_contig15125.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15125.2.2 vs. uniprot
Match: Q8QNM4_ESV1K (EsV-1-40 n=2 Tax=root TaxID=1 RepID=Q8QNM4_ESV1K)

HSP 1 Score: 244 bits (622), Expect = 3.490e-72
Identity = 148/454 (32.60%), Postives = 236/454 (51.98%), Query Frame = 1
Query:    1 SAFFETLFSSDMNKGIYIDKDSGVTVIPVSGYLESETILRMVRIFCHTGTLEVFDGDSVEILLECYFASDFYGLEGALKLLHSMLVNQISPANVLRVYEILLRKGSCEGKV-------IEKEVEDYIATYAFVILKHKSFLQFPSDLLGNMCHLLRRDDLNILEKDLLWLVYKCCSHRCDGMMAHASPSNVSEHPSPMDLLLHHWTDHGAQSLWGSIRFAALTHTEFADFIFKNPTALEDADTVDIIKFLH-----IIKETPEENVE----------------FRAISFYPRNLQLYGMRSPQSDVVYWDSQKMTAFFALQYDTKSAVSLNPIRFCKSYFHLELSHSENSIHMYGRAHPDQNAVSSVNTRADVKVTSSIVNFKHDRWKKKASVVPLSHSKVSEFSLNNILTWSTVEKVKKNEEADSSGYLFDIGYYPHYRA-GTWMMVLVSIES 1275
            S +F+ LFSS M KG   ++  GVT   VS  +    I  M+R+FCHTG ++V  G+ +   +E Y A  +Y L+G + ++  ++++ I+P N ++  E  +    C G         +  +++DYI+ YAFV+ KHKSF    +D +  +  +  RDDLNI E DLL  VYK C  +   + A   P  +    S   L+     + G+ SLW  IR ++++  EF  FI +N       + + II FL+        +TP  +                  F+ ISFYPRNL+ +G+ SPQ+D+ YWD  K+  F A  + +K A++L P+ F   + H  + H++ S+++ G  H   N     +   ++ VT+S+VNF+HDRW+KK  +  LS    + F +  IL+ +T+         D+ GYLFDI  YP Y   GTW+++ + IE 
Sbjct:   54 SDYFKCLFSSSMRKGT--EEFEGVTAYSVSHPMSKRHIFDMMRVFCHTGMVQVDKGEPILKTMERYSAFHYYSLQGGMNVIRQLVMDVINPTNAIQALEYAMSSAVCSGDGDGDSNAGLLSDIQDYISIYAFVVFKHKSFYALRADSIPGVSQICARDDLNIKEIDLLQCVYKLCEKK---VSADNKPGGLG---SAWALMTDDAAERGS-SLWSKIRLSSISMREFVKFIKENKQCFSSDNALKIITFLYSCADAAAADTPPSSASANDEVVGVHLSKKRKTFQPISFYPRNLEFHGLASPQTDISYWDDSKIKLFVAFDFSSKEAMTLPPVHFHSVFIHCTVYHADRSLNVSGNIHGKTN---KSDPSVNITVTASVVNFRHDRWRKKNVLASLSSG--TAFKIPTILSSNTIAN------NDTHGYLFDIERYPEYSPKGTWILMSLCIEK 487          
BLAST of mRNA_P-wetherbeei_contig15125.2.2 vs. uniprot
Match: B5LWK4_9PHYC (Putative transcription regulator n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK4_9PHYC)

HSP 1 Score: 195 bits (496), Expect = 4.800e-54
Identity = 126/428 (29.44%), Postives = 220/428 (51.40%), Query Frame = 1
Query:    1 SAFFETLFSSDMNKGIYIDKDSGVTVIPVSGYLESETILRMVRIFCHTGTLEVFDGDSVEILLECYFASDFYGLEGALKLLHSMLVNQISPANVLRVYEILLRKGSCEGKVIEKEVEDYIATYAFVILKHKSFLQFPSDLLGNMCHLLRRDDLNILEKDLLWLVYKCCSHRCDGMMAHASPSNVSEHPSPMDLLLHHWTDHGAQSLWGSIRFAALTHTEFADFIFKNPTALEDADTVDIIKFLHIIKETPEENVEFRAISFYPRNLQLYGMRSPQSDVVYWDSQKMTAFFALQYDTKSAVSLNPIRFCKSYFHLELSHSENSIHMYGRA-HPDQNAVSSVNTRADVKVTSSIVNFKHDRWKKKASVVPLSHSKVSEFSLNNILTWSTVEKVKKNEEADSSGYLFDIGYYPHYR-AGTWMMVLVSIESM 1278
            S+F  TLF + + KG     +     +P+    E   I  M+R+FCHTG +     D++   +E Y A  FYG+E     L  ++++ + P+N +  +E  + +   + + + +++  YI  YAF++ + KSFL    + L  + HL   D LN+ E DLL  + + C  + D           +E  SP  +L H       +SL+ ++R ++L+  EF     K+P A+ +   V +++ +H  + + ++  +F+ +S YPRNL  + + SPQ +V Y    K+ A +  Q+  K  VSL  + F      + + + +  + + G+A  P Q +      RAD+++T+S+VNF+HDRWKK  S   LS S    F + NIL+ + +E         SSGYLFD+  YP +   G+ +M+ ++ ES+
Sbjct:   56 SSFMRTLFETTVGKG-----EKSRDEVPMYRLSEKSHIFAMIRVFCHTGLVRFGKSDTILRTIERYAAFQFYGIEIGSATLKRLVLDSLGPSNSMVAFEYAVHR---QDRGLLQDIVAYIRNYAFLVFRQKSFLGIRRESLAELVHLCDSDSLNVPEIDLLSHLIRLCEKKLDE-------KEFTEFDSPFAILTHREWGTSGKSLFDALRLSSLSMEEFMSLALKHPGAMNNDQIVQVMRAIHRPEGSSKKRKKFQIVSAYPRNLTFHPVESPQMEVSYCQRDKVLAHYVFQFLPKKDVSLPTLNFGSYQIRITVVYRDKVLGISGQAISPKQES------RADLRITASMVNFRHDRWKK--STTALSGSV---FQIPNILSCNAIE--------GSSGYLFDVAEYPDFSDGGSCLMLSLACESL 449          
BLAST of mRNA_P-wetherbeei_contig15125.2.2 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.930e-22
Identity = 60/176 (34.09%), Postives = 96/176 (54.55%), Query Frame = 1
Query:    1 SAFFETLFSSDMNKGIYIDKDSGVTVIPVSGYLESETILRMVRIFCHTGTLEVFDGDSVEILLECYFASDFYGLEGALKLLHSMLVNQISPANVLRVYEILLRKGSCEG-----KVIEKEVEDYIATYAFVILKHKSFLQFPSDLLGNMCHLLRRDDLNILEKDLLWLVYKCCSHR 513
            S +F+ LF +DM KG   +K  GV    VS  +    I  M+R+FC+TG ++V  G+ +   +E Y A  +Y L G + ++  ++++ I+P+N ++  E  +    C G     + +  ++ DYIA YA V+ KHKSF     + +  +  +  RDDLNI E DLL  V+K C  R
Sbjct:  449 SDYFKCLFLNDMRKGT--EKFEGVKANKVSDPISKRHIFDMMRVFCYTGIVQVDKGEPILKTMERYSAFHYYSLRGGMDVIRQLVMDVINPSNAIQALEYAMNSVVCSGEDGSDRGLLSDISDYIAIYALVVFKHKSFYALGFESIPGISQICARDDLNIREIDLLQCVFKLCEKR 622          
BLAST of mRNA_P-wetherbeei_contig15125.2.2 vs. uniprot
Match: A0A836CM23_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM23_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.210e-14
Identity = 103/439 (23.46%), Postives = 182/439 (41.46%), Query Frame = 1
Query:   67 GVTVIPVSGYLESETILRMVRIFCHTGTLEVFDGDSVEILLECYFASDFYGLEGALKLLHSMLVNQISPANVLRVYEIL-LRKGSCEGKVIEKEVEDYIATYAFVILKHKSFLQFPSDLLGNMCHLLRRDDLNILEKDLLWLVYKCCSH-RCDGMMAHASPSNVSEHPSPMDLLLHHWTDHGAQSLWGSIRFAALTHTEFADFIFKNPTALEDA---DTVDIIK----------FLHIIKETPEENVEFRAISFYPRNL--QLYGMRS------------PQSDV-VYWDSQKMTAFFA-LQYDTKSAVSLNPIRFCKSYFHLELSHSENSIHMYGRAHPDQNAVSS-----VNTRADVKVTSSIVNFKHDRWKKKASVVPLSHSKVSEFSLNNILTWSTVEKVKKNEEADSSGYLFDIGYYPHYRAGTWMMVLVSIES 1275
            G +V+ V G+L    +LRMVR+F HTG       +S   L   Y   DF+    +  LLH ++V ++   + L+++++L +R+ S     ++  V  Y+  + F      S     +  L ++C +L  D++N  E  LL  +Y  C   +  G    +S S +   P+   +           S W  +R   L  ++   F    P A  D+   +  ++I+           L + + +  E  +  AIS YPRN+   ++G+ S            P S + + W  + ++  +A L Y     V L P    +S   L      + +H+ G    D NA           +A   +T   V+F+H RW K  +++    S    F +  ++T S +E         + GY FD   YP +  G ++M+ + I  
Sbjct:   70 GRSVVRVEGFLRQADLLRMVRVFGHTGITVYGRTESPMALYRRYECCDFFIFNCSRDLLHRVIVERLDVHSALQLFDVLSVREFSDNSLTVD--VTAYVTNH-FGEASRSSLSALGTHSLPHLCAVLSGDEVNACESKLLGSLYSVCDRLKTKG----SSTSQLFMQPTTCGV-----------SPWQCVRVLGLKVSDLLAFRASWPLAFSDSFCWNLAEVIETRNAEDRHFQLLGLSEASMREPRKLTAISCYPRNIPMSMHGLISDATAATNRSVIGPASIIHIMWQERHISVAYACLAYTRGRRVQLPPFACNRSVIQLTAIFEGSHMHIEGGV--DINASQRRERHMSEPQAGRLLTVYAVHFRHGRWNKGGAIIKGGRS----FHIAKLITLSALE---------TEGYKFDPTKYPVFTPGGYIMIKMVITD 475          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15125.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNM4_ESV1K3.490e-7232.60EsV-1-40 n=2 Tax=root TaxID=1 RepID=Q8QNM4_ESV1K[more]
B5LWK4_9PHYC4.800e-5429.44Putative transcription regulator n=1 Tax=Feldmanni... [more]
A0A6H5KJD3_9PHAE3.930e-2234.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CM23_9STRA6.210e-1423.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15125contigP-wetherbeei_contig15125:37..1458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1281
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionEsV-1-40 BTB/POZ-like domain
Ec32 orthologEc-06_006390.1
Cds size1281
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.3660603-CDS-P-wetherbeei_contig15125:36..5961683186045.3660603-CDS-P-wetherbeei_contig15125:36..596Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15125 37..596 +
1683186045.3753915-CDS-P-wetherbeei_contig15125:638..8431683186045.3753915-CDS-P-wetherbeei_contig15125:638..843Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15125 639..843 +
1683186045.3837998-CDS-P-wetherbeei_contig15125:942..14581683186045.3837998-CDS-P-wetherbeei_contig15125:942..1458Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15125 943..1458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15125.2.2prot_P-wetherbeei_contig15125.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15125 37..1458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15125.2.2

>prot_P-wetherbeei_contig15125.2.2 ID=prot_P-wetherbeei_contig15125.2.2|Name=mRNA_P-wetherbeei_contig15125.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=427bp
SAFFETLFSSDMNKGIYIDKDSGVTVIPVSGYLESETILRMVRIFCHTGT
LEVFDGDSVEILLECYFASDFYGLEGALKLLHSMLVNQISPANVLRVYEI
LLRKGSCEGKVIEKEVEDYIATYAFVILKHKSFLQFPSDLLGNMCHLLRR
DDLNILEKDLLWLVYKCCSHRCDGMMAHASPSNVSEHPSPMDLLLHHWTD
HGAQSLWGSIRFAALTHTEFADFIFKNPTALEDADTVDIIKFLHIIKETP
EENVEFRAISFYPRNLQLYGMRSPQSDVVYWDSQKMTAFFALQYDTKSAV
SLNPIRFCKSYFHLELSHSENSIHMYGRAHPDQNAVSSVNTRADVKVTSS
IVNFKHDRWKKKASVVPLSHSKVSEFSLNNILTWSTVEKVKKNEEADSSG
YLFDIGYYPHYRAGTWMMVLVSIESM*
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mRNA from alignment at P-wetherbeei_contig15125:37..1458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15125.2.2 ID=mRNA_P-wetherbeei_contig15125.2.2|Name=mRNA_P-wetherbeei_contig15125.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1422bp|location=Sequence derived from alignment at P-wetherbeei_contig15125:37..1458+ (Phaeothamnion wetherbeei SAG_119_79)
TCTGCGTTTTTTGAGACGCTTTTTTCTTCTGACATGAACAAGGGAATTTA CATTGACAAGGATTCAGGTGTGACGGTTATTCCCGTGTCGGGTTATCTTG AGAGTGAGACCATCCTGCGCATGGTGAGGATATTCTGCCATACTGGGACC TTGGAGGTCTTTGATGGAGATTCCGTCGAAATTCTTCTTGAATGCTACTT TGCATCCGACTTCTACGGACTTGAGGGTGCTCTTAAGCTCCTCCATTCCA TGCTTGTGAACCAAATCTCTCCTGCAAATGTTCTCCGTGTGTACGAAATC CTCTTGCGAAAGGGATCATGTGAGGGAAAAGTGATTGAAAAGGAAGTGGA AGATTACATTGCAACGTACGCATTTGTGATTCTGAAGCATAAGTCATTTC TTCAATTTCCGTCGGATCTCCTTGGCAACATGTGCCACCTCTTGAGACGC GATGATCTTAACATTCTTGAAAAGGATCTCCTTTGGCTTGTATACAAGTG TTGCAGTCATCGTTGTGATGGAATGATGGCACACGCCAGTCCTTCAAATG TTTCAGAGCAGTCTGGCGCAAGCCCATCTGGCGCAAGCCCGTCTGGCGCA AGCCCGAGTCCCATGGACTTGCTACTTCATCACTGGACAGACCATGGGGC ACAGAGCCTGTGGGGAAGCATACGCTTTGCGGCACTGACTCATACTGAAT TCGCCGACTTTATCTTTAAAAATCCCACGGCGCTTGAAGATGCCGACACC GTAGACATCATCAAGTTTCTTCACATCATCAAGGAGACACCCGAAGAAAA CGTTGAAGTAGCTCTTGCTTCATGGCGCAATGCCCGAGGCAGCGCACGAA GTTCACGTTCGACTGTCGTTTCTGAAATGTGCATCACTTTACAACCAAGG TTCAAGTTCCGGGCCATTTCATTTTACCCACGCAACCTTCAATTGTATGG GATGCGAAGTCCTCAGAGTGATGTTGTGTACTGGGACAGTCAAAAAATGA CTGCCTTCTTTGCTCTTCAGTATGACACCAAGAGTGCGGTTTCGCTGAAC CCCATCCGGTTCTGCAAATCATACTTTCATTTGGAACTGTCACATTCGGA GAACTCAATTCACATGTACGGCCGAGCGCATCCGGATCAAAATGCAGTGT CTTCAGTCAATACGCGCGCAGATGTCAAGGTGACATCTAGTATTGTCAAC TTCAAACACGATCGATGGAAAAAGAAAGCATCTGTTGTTCCTCTGAGTCA TTCGAAAGTATCAGAGTTTAGTCTGAACAATATCCTGACATGGAGCACTG TGGAAAAGGTGAAAAAGAATGAAGAGGCTGATAGTTCTGGGTACTTGTTT GATATTGGATACTATCCCCACTATCGAGCTGGGACGTGGATGATGGTTCT CGTTTCGATCGAGAGCATGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15125:37..1458+

>mRNA_P-wetherbeei_contig15125.2.2 ID=mRNA_P-wetherbeei_contig15125.2.2|Name=mRNA_P-wetherbeei_contig15125.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1281bp|location=Sequence derived from alignment at P-wetherbeei_contig15125:37..1458+ (Phaeothamnion wetherbeei SAG_119_79)
TCTGCGTTTTTTGAGACGCTTTTTTCTTCTGACATGAACAAGGGAATTTA
CATTGACAAGGATTCAGGTGTGACGGTTATTCCCGTGTCGGGTTATCTTG
AGAGTGAGACCATCCTGCGCATGGTGAGGATATTCTGCCATACTGGGACC
TTGGAGGTCTTTGATGGAGATTCCGTCGAAATTCTTCTTGAATGCTACTT
TGCATCCGACTTCTACGGACTTGAGGGTGCTCTTAAGCTCCTCCATTCCA
TGCTTGTGAACCAAATCTCTCCTGCAAATGTTCTCCGTGTGTACGAAATC
CTCTTGCGAAAGGGATCATGTGAGGGAAAAGTGATTGAAAAGGAAGTGGA
AGATTACATTGCAACGTACGCATTTGTGATTCTGAAGCATAAGTCATTTC
TTCAATTTCCGTCGGATCTCCTTGGCAACATGTGCCACCTCTTGAGACGC
GATGATCTTAACATTCTTGAAAAGGATCTCCTTTGGCTTGTATACAAGTG
TTGCAGTCATCGTTGTGATGGAATGATGGCACACGCCAGTCCTTCAAATG
TTTCAGAGCACCCGAGTCCCATGGACTTGCTACTTCATCACTGGACAGAC
CATGGGGCACAGAGCCTGTGGGGAAGCATACGCTTTGCGGCACTGACTCA
TACTGAATTCGCCGACTTTATCTTTAAAAATCCCACGGCGCTTGAAGATG
CCGACACCGTAGACATCATCAAGTTTCTTCACATCATCAAGGAGACACCC
GAAGAAAACGTTGAATTCCGGGCCATTTCATTTTACCCACGCAACCTTCA
ATTGTATGGGATGCGAAGTCCTCAGAGTGATGTTGTGTACTGGGACAGTC
AAAAAATGACTGCCTTCTTTGCTCTTCAGTATGACACCAAGAGTGCGGTT
TCGCTGAACCCCATCCGGTTCTGCAAATCATACTTTCATTTGGAACTGTC
ACATTCGGAGAACTCAATTCACATGTACGGCCGAGCGCATCCGGATCAAA
ATGCAGTGTCTTCAGTCAATACGCGCGCAGATGTCAAGGTGACATCTAGT
ATTGTCAACTTCAAACACGATCGATGGAAAAAGAAAGCATCTGTTGTTCC
TCTGAGTCATTCGAAAGTATCAGAGTTTAGTCTGAACAATATCCTGACAT
GGAGCACTGTGGAAAAGGTGAAAAAGAATGAAGAGGCTGATAGTTCTGGG
TACTTGTTTGATATTGGATACTATCCCCACTATCGAGCTGGGACGTGGAT
GATGGTTCTCGTTTCGATCGAGAGCATGTAA
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