mRNA_P-wetherbeei_contig15117.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15117.1.1
Unique NamemRNA_P-wetherbeei_contig15117.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig15117.1.1 vs. uniprot
Match: A0A813FY25_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FY25_POLGL)

HSP 1 Score: 58.2 bits (139), Expect = 1.350e-7
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:   79 FLAIQSFFLRELASHPWRVQDPAQAVFFVIPFDLEQSYFAGTTAQHGTHLNRVEGLLDALEQSEWYKRRGGADHFW 306
            ++   + F++ +     RV+DPA A +FVIPF +  S         G+HL+R+   LD LE S W++RR G DH W
Sbjct:   69 YVIADAEFIKHIEPLEGRVEDPAAASWFVIPFSVGLSRAYDGVC--GSHLDRLNQALDVLESSPWFQRRQGRDHPW 142
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15117.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A813FY25_POLGL1.350e-738.16Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15117contigP-wetherbeei_contig15117:807..1297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0SXS2
PFAMsExostosin
Model size327
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.75e-07
EggNOG OGs2F00R@1|root,2T18Y@2759|Eukaryota
DescriptionExostosin family
Cds size327
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186045.1447937-CDS-P-wetherbeei_contig15117:806..9061683186045.1447937-CDS-P-wetherbeei_contig15117:806..906Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15117 807..906 -
1683186045.1567996-CDS-P-wetherbeei_contig15117:1070..12971683186045.1567996-CDS-P-wetherbeei_contig15117:1070..1297Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15117 1071..1297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15117.1.1prot_P-wetherbeei_contig15117.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15117 807..1297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15117.1.1

>prot_P-wetherbeei_contig15117.1.1 ID=prot_P-wetherbeei_contig15117.1.1|Name=mRNA_P-wetherbeei_contig15117.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
LPFYLYSGAEWTCSAPLQKEPSGEDWFLAIQSFFLRELASHPWRVQDPAQ
AVFFVIPFDLEQSYFAGTTAQHGTHLNRVEGLLDALEQSEWYKRRGGADH
FWSFFRWEM
back to top

mRNA from alignment at P-wetherbeei_contig15117:807..1297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15117.1.1 ID=mRNA_P-wetherbeei_contig15117.1.1|Name=mRNA_P-wetherbeei_contig15117.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=491bp|location=Sequence derived from alignment at P-wetherbeei_contig15117:807..1297- (Phaeothamnion wetherbeei SAG_119_79)
CTTCCCTTCTACCTCTATTCCGGTGCGGAGTGGACTTGCTCGGCCCCGTT
GCAGAAGGAACCAAGCGGCGAGGATTGGTTCCTGGCGATACAGAGCTTCT
TCCTAAGAGAACTGGCGAGCCACCCATGGAGGGTTCAAGACCCCGCCCAA
GCAGTGTTCTTCGTCATCCCCTTCGACCTAGAGCAATCTTACTTTGCGGG
CACCACCGCCCAACATGGGACCCATTTGTGAGTTTTGTGGTAGCACAACT
GCGCGTTACAAAACGCCTTGGTCTAACCAAAGCATGATATTTCCTTTCGG
ATCAGCGCTTGTCAACGTCATGTCTTTCTTGTAAAAGCGGGCATGGCCCT
TAACAATTTCTTTCCTTCCGGCAACCAATTATCGTCTGCAGGAATCGCGT
GGAGGGGTTGCTGGACGCGTTAGAGCAGTCGGAATGGTACAAGCGACGTG
GCGGCGCCGACCACTTCTGGTCGTTCTTCAGATGGGAGATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15117:807..1297-

>mRNA_P-wetherbeei_contig15117.1.1 ID=mRNA_P-wetherbeei_contig15117.1.1|Name=mRNA_P-wetherbeei_contig15117.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig15117:807..1297- (Phaeothamnion wetherbeei SAG_119_79)
CTTCCCTTCTACCTCTATTCCGGTGCGGAGTGGACTTGCTCGGCCCCGTT
GCAGAAGGAACCAAGCGGCGAGGATTGGTTCCTGGCGATACAGAGCTTCT
TCCTAAGAGAACTGGCGAGCCACCCATGGAGGGTTCAAGACCCCGCCCAA
GCAGTGTTCTTCGTCATCCCCTTCGACCTAGAGCAATCTTACTTTGCGGG
CACCACCGCCCAACATGGGACCCATTTGAATCGCGTGGAGGGGTTGCTGG
ACGCGTTAGAGCAGTCGGAATGGTACAAGCGACGTGGCGGCGCCGACCAC
TTCTGGTCGTTCTTCAGATGGGAGATG
back to top