mRNA_P-wetherbeei_contig15108.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15108.1.1
Unique NamemRNA_P-wetherbeei_contig15108.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15108.1.1 vs. uniprot
Match: W7TF57_9STRA (Equilibrative nucleoside transporter 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TF57_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.620e-28
Identity = 73/146 (50.00%), Postives = 86/146 (58.90%), Query Frame = 1
Query:    7 RRCAAGAGRMSRDLFVPLSFVSFNAMDLAGRILAGS--RSHVVPVGRLWLAAAARVVFVPLFLICAVAGSRLPTVFPADGFPVFFMVTFALSNGLLSSRAMMDGPGTVSVHDRELAGTAMVLSLNGGLLAGSLLSFLALYISTGSF 438
            RRC  G G      FVP  F+ FN  D  GR LAG      +VP  RL   AAARVVF+PLFL+C V  S  P VF AD +P+ FM+ F+LSNG LSS AMM GP  ++V   E  G  MVL +  GL AGS+LSFL   +S   F
Sbjct:  390 RRCQ-GRGVFYDQAFVPFQFLLFNLGDWGGRTLAGHLPSPFLVPAHRLSFYAAARVVFLPLFLLCNVDDSAFPIVFAADWWPMLFMLFFSLSNGYLSSLAMMRGPAQLTVDQAERGGNVMVLLMTAGLSAGSVLSFLVSAVSLNKF 534          
BLAST of mRNA_P-wetherbeei_contig15108.1.1 vs. uniprot
Match: D8LP16_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP16_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 5.670e-23
Identity = 69/144 (47.92%), Postives = 88/144 (61.11%), Query Frame = 1
Query:    1 SRRRCAAGAGRM-SRDLFVPLSFVSFNAMDLAGRILAGSRSHVVPVGRLWLAAAARVVFVPLFLICAVAGSRLPTVFPADGFPVFFMVTFALSNGLLSSRAMMDGPGTVSVHDRELAGTAMVLSLNGGLLAGSLLSFLALYIST 429
            S +RC +G  R  + D+FV  SFVSFNA DL GR++AG  +  +P   L  A+ +R++FVPL L C    SR      AD FP+  M  FA +NG + S +MM G    +      AGTAMVL L+GGLLAGSLLSFL L+ ST
Sbjct:  401 SSQRCQSGRSRFFAGDVFVMFSFVSFNAFDLLGRLVAGL-AVALPYAWLPTASVSRLMFVPLMLACRSEHSRFRDWLSADVFPLTLMPVFAFTNGYVGSLSMMAGSQLGA-----WAGTAMVLFLSGGLLAGSLLSFLVLFAST 538          
BLAST of mRNA_P-wetherbeei_contig15108.1.1 vs. uniprot
Match: A0A482SJY5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJY5_9ARCH)

HSP 1 Score: 97.1 bits (240), Expect = 1.160e-20
Identity = 58/139 (41.73%), Postives = 80/139 (57.55%), Query Frame = 1
Query:   31 RMSRDLFVPLSFVSFNAMDLAGRILA--GSRSHVVPVGRLWLAAAARVVFVPLFLICAVAGSRLPTVFPADGFPVFFMVTFALSNGLLSSRAMMDGPGTVSVHDRELAGTAMVLSLNGGLLAGSLLSFLALYISTGSFD 441
            R+  DL++P+ FV  NA D+ GRILA  GS +  +    + + +  R+    L L C +  + L +    DG  +  +     SNGLL++ AMM GPG VS+ D  LAGT M+  LN GLL GS LSFL LY+ TGS +
Sbjct:  390 RLYGDLWIPVMFVLLNAGDVIGRILAQIGSENKYITPTNIHIHSTVRLAIPVLLLFCNIPDNHLDSAINTDGVVLLLIFLLGFSNGLLANLAMMFGPGLVSLPDAPLAGTIMMFWLNCGLLLGSALSFLWLYVVTGSVN 528          
BLAST of mRNA_P-wetherbeei_contig15108.1.1 vs. uniprot
Match: A0A7S2U1B1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U1B1_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 3.790e-18
Identity = 60/132 (45.45%), Postives = 70/132 (53.03%), Query Frame = 1
Query:   25 AGRMSRDLFVPL-SFVSFNAMDLAGRILAGSRSHVVPVGRLWLAAAARVVFVPLFLIC---AVAGSRLPTVFPADGFPVFFMVTFALSNGLLSSRAMMDGPGTVSVHDRELAGTAMVLSLNGGLLAGSLLSF 408
            AGR   DLFVP+  F+ FN  D  GR LAG R   +P       + ARVVF+PLFL+C    V  S LP VF    FP+ FMV  A SNG LS    M+ P  V    ++ AG  M L    GLL GS  SF
Sbjct:  181 AGRFYGDLFVPVYCFLLFNICDFGGRCLAG-RYRFIPARWYLPLSTARVVFIPLFLLCNVVEVGDSVLPVVFKHVAFPILFMVFMAFSNGYLSCLQFMEAPSRVPECLQDTAGRMMCLFCGFGLLVGSAFSF 311          
BLAST of mRNA_P-wetherbeei_contig15108.1.1 vs. uniprot
Match: A0A315VKP1_GAMAF (Uncharacterized protein n=1 Tax=Gambusia affinis TaxID=33528 RepID=A0A315VKP1_GAMAF)

HSP 1 Score: 84.3 bits (207), Expect = 1.230e-17
Identity = 59/129 (45.74%), Postives = 71/129 (55.04%), Query Frame = 1
Query:   49 FVPLS-FVSFNAMDLAGRILA------GSRSHVVPVGRLWLAAAARVVFVPLFLICAVAG-SRLPTVFPADGFPVFFMVTFALSNGLLSSRAMMDGPGTVSVHDRELAGTAMVLSLNGGLLAGSLLSFL 411
            FVP+S F+ FN  D  GR L       G  S V+P   L     AR+VFVPLF++C V   S LP  F  DGF + FM+ FA SNG L+S  M  GP  V  H+ E AG  M   L  GL AG+ +SFL
Sbjct:   49 FVPVSCFLLFNLSDWTGRSLTAVFMWPGKDSPVLPAAIL-----ARIVFVPLFMLCNVQPRSHLPVFFYHDGFFIAFMLLFAFSNGYLASLCMCYGPKNVLPHEAETAGAIMAFFLALGLAAGAAISFL 172          
BLAST of mRNA_P-wetherbeei_contig15108.1.1 vs. uniprot
Match: UPI0007B84BEF (equilibrative nucleoside transporter 1-like n=2 Tax=Poecilia TaxID=8080 RepID=UPI0007B84BEF)

HSP 1 Score: 83.6 bits (205), Expect = 2.780e-17
Identity = 59/129 (45.74%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   49 FVPLS-FVSFNAMDLAGRILA------GSRSHVVPVGRLWLAAAARVVFVPLFLICAVAGS-RLPTVFPADGFPVFFMVTFALSNGLLSSRAMMDGPGTVSVHDRELAGTAMVLSLNGGLLAGSLLSFL 411
            FVP+S F+ FN  D  GR L       G  S V+P   L     ARVVFVPLF++C V     LP  F  DGF + FM+ FA SNG L+S  M  GP  V  H+ E AG  M   L  GL AG+ +SFL
Sbjct:   55 FVPVSCFLLFNLSDWTGRSLTAVCMWPGKDSPVLPAAIL-----ARVVFVPLFMLCNVQPRLHLPVFFHHDGFFIAFMILFAFSNGYLASLCMCYGPKNVLPHEAETAGAIMAFFLALGLAAGAAVSFL 178          
BLAST of mRNA_P-wetherbeei_contig15108.1.1 vs. uniprot
Match: A0A0P7XRD8_SCLFO (Equilibrative nucleoside transporter 1-like n=3 Tax=Scleropages formosus TaxID=113540 RepID=A0A0P7XRD8_SCLFO)

HSP 1 Score: 85.9 bits (211), Expect = 5.140e-17
Identity = 57/134 (42.54%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   34 MSRDL-FVPLS-FVSFNAMDLAGRILA------GSRSHVVPVGRLWLAAAARVVFVPLFLICAVAG-SRLPTVFPADGFPVFFMVTFALSNGLLSSRAMMDGPGTVSVHDRELAGTAMVLSLNGGLLAGSLLSF 408
            M +D+ F+P+S F+ FN MD AGR L       G  S ++P+  L     AR++FVPLF++C V   S LP  F  D + +FFM+ FA SNG L+S  M  GP  V  H+ E AG  M   L+ GL  G+ +SF
Sbjct:  223 MKKDIYFIPVSCFLLFNIMDWAGRSLTAVCLWPGKNSKLLPLLLL-----ARMLFVPLFMLCNVQPRSNLPVFFSHDAWFIFFMILFAFSNGYLASLCMCFGPKKVEAHEAETAGAIMAFFLSLGLALGASISF 351          
BLAST of mRNA_P-wetherbeei_contig15108.1.1 vs. uniprot
Match: UPI00072E4A1D (equilibrative nucleoside transporter 1-like n=1 Tax=Poecilia latipinna TaxID=48699 RepID=UPI00072E4A1D)

HSP 1 Score: 84.3 bits (207), Expect = 5.500e-17
Identity = 60/132 (45.45%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   49 FVPLS-FVSFNAMDLAGRILA------GSRSHVVPVGRLWLAAAARVVFVPLFLICAVAGS-RLPTVFPADGFPVFFMVTFALSNGLLSSRAMMDGPGTVSVHDRELAGTAMVLSLNGGLLAGSLLSFLALY 420
            FVP+S F+ FN  D  GR L       G  S V+P   L     ARVVFVPLF++C V     LP  F  DGF + FM+ FA SNG L+S  M  GP  V  H+ E AG  M   L  GL AG+ +SFL  Y
Sbjct:   55 FVPVSCFLLFNLSDWTGRSLTAVCMWPGKDSPVLPAAIL-----ARVVFVPLFMLCNVQPRLHLPVFFHHDGFFIAFMILFAFSNGYLASLCMCYGPKNVLPHEAETAGAIMAFFLALGLAAGAAVSFLFRY 181          
BLAST of mRNA_P-wetherbeei_contig15108.1.1 vs. uniprot
Match: A0A3B3YXB8_9TELE (Equilibrative nucleoside transporter 1-like n=1 Tax=Poecilia mexicana TaxID=48701 RepID=A0A3B3YXB8_9TELE)

HSP 1 Score: 83.6 bits (205), Expect = 8.100e-17
Identity = 59/129 (45.74%), Postives = 70/129 (54.26%), Query Frame = 1
Query:   49 FVPLS-FVSFNAMDLAGRILA------GSRSHVVPVGRLWLAAAARVVFVPLFLICAVAGS-RLPTVFPADGFPVFFMVTFALSNGLLSSRAMMDGPGTVSVHDRELAGTAMVLSLNGGLLAGSLLSFL 411
            FVP+S F+ FN  D  GR L       G  S V+P   L     ARVVFVPLF++C V     LP  F  DGF + FM+ FA SNG L+S  M  GP  V  H+ E AG  M   L  GL AG+ +SFL
Sbjct:  109 FVPVSCFLLFNLSDWTGRSLTAVCMWPGKDSPVLPAAIL-----ARVVFVPLFMLCNVQPRLHLPVFFHHDGFFIAFMILFAFSNGYLASLCMCYGPKNVLPHEAETAGAIMAFFLALGLAAGAAVSFL 232          
BLAST of mRNA_P-wetherbeei_contig15108.1.1 vs. uniprot
Match: A0A2D4BH47_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BH47_PYTIN)

HSP 1 Score: 85.9 bits (211), Expect = 8.470e-17
Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 1
Query:   25 AGRMSRDLFVPLSFVSFNAMDLAGRILAGSRSHVVPVGRLW--LAAAARVVFVPLFLICAVAG----SRLPTVFPADGFPVFFMVTFALSNGLLSSRAMMDGPGTV-SVHDRELAGTAMVLSLNGGLLAGSLLSF 408
            +GR+ RDLFVP++FV FNA D  GR    S + +    R W  L AAARV+F+PL+++C + G      LP +F  D FP  FM+  A ++GLL ++ +M  P  + S   +E+ GT M+ +L+ GL  G++ SF
Sbjct:  306 SGRVFRDLFVPMTFVLFNAGDFLGR---WSATKMPTPSRRWILLLAAARVLFLPLWMLCNLHGVDKARALPVLFRHDAFPAVFMLLCAFTHGLLYTQTLMRYPALLPSSQAKEIGGTVMLFALSIGLGLGAIASF 437          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15108.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TF57_9STRA1.620e-2850.00Equilibrative nucleoside transporter 1 n=3 Tax=Mon... [more]
D8LP16_ECTSI5.670e-2347.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A482SJY5_9ARCH1.160e-2041.73Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2U1B1_9EUKA3.790e-1845.45Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A315VKP1_GAMAF1.230e-1745.74Uncharacterized protein n=1 Tax=Gambusia affinis T... [more]
UPI0007B84BEF2.780e-1745.74equilibrative nucleoside transporter 1-like n=2 Ta... [more]
A0A0P7XRD8_SCLFO5.140e-1742.54Equilibrative nucleoside transporter 1-like n=3 Ta... [more]
UPI00072E4A1D5.500e-1745.45equilibrative nucleoside transporter 1-like n=1 Ta... [more]
A0A3B3YXB8_9TELE8.100e-1745.74Equilibrative nucleoside transporter 1-like n=1 Ta... [more]
A0A2D4BH47_PYTIN8.470e-1740.74Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15108contigP-wetherbeei_contig15108:3..446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LP16
Preferred nameSLC29A1
PFAMsNucleoside_tran
Model size444
Max annot lvl2759|Eukaryota
KEGG koko:K15014,ko:K17544
KEGG TC2.A.57.1
Hectar predicted targeting categorysignal anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001666,GO:0001678,GO:0003008,GO:0003674,GO:0005215,GO:0005337,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0005887,GO:0006139,GO:0006725,GO:0006807,GO:0006810,GO:0006863,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007275,GO:0007589,GO:0007595,GO:0007610,GO:0007611,GO:0007612,GO:0008150,GO:0008152,GO:0008283,GO:0008306,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010959,GO:0012505,GO:0015205,GO:0015851,GO:0015853,GO:0015854,GO:0015855,GO:0015858,GO:0015862,GO:0015864,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016323,GO:0016324,GO:0019725,GO:0022857,GO:0023052,GO:0030431,GO:0030879,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032879,GO:0033500,GO:0033554,GO:0034257,GO:0034258,GO:0034284,GO:0034641,GO:0035344,GO:0035364,GO:0036293,GO:0036294,GO:0042221,GO:0042391,GO:0042592,GO:0042593,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0043271,GO:0043434,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045177,GO:0046483,GO:0046903,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050877,GO:0050878,GO:0050890,GO:0050896,GO:0051049,GO:0051051,GO:0051179,GO:0051234,GO:0051716,GO:0051924,GO:0051926,GO:0055082,GO:0055085,GO:0060078,GO:0060079,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070887,GO:0071310,GO:0071322,GO:0071326,GO:0071331,GO:0071333,GO:0071375,GO:0071417,GO:0071453,GO:0071456,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0090279,GO:0090281,GO:0097708,GO:0098588,GO:0098590,GO:0098805,GO:0098852,GO:0098916,GO:0099536,GO:0099537,GO:0099565,GO:1901264,GO:1901360,GO:1901505,GO:1901642,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1905114
Exons1
Evalue9.29e-24
EggNOG OGsKOG1479@1|root,KOG1479@2759|Eukaryota
Descriptionnucleoside transmembrane transporter activity
Cds size444
COG categoryS
BRITEko00000,ko01001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.904407-CDS-P-wetherbeei_contig15108:2..4461683186044.904407-CDS-P-wetherbeei_contig15108:2..446Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15108 3..446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15108.1.1prot_P-wetherbeei_contig15108.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15108 3..446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15108.1.1

>prot_P-wetherbeei_contig15108.1.1 ID=prot_P-wetherbeei_contig15108.1.1|Name=mRNA_P-wetherbeei_contig15108.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
SRRRCAAGAGRMSRDLFVPLSFVSFNAMDLAGRILAGSRSHVVPVGRLWL
AAAARVVFVPLFLICAVAGSRLPTVFPADGFPVFFMVTFALSNGLLSSRA
MMDGPGTVSVHDRELAGTAMVLSLNGGLLAGSLLSFLALYISTGSFD*
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mRNA from alignment at P-wetherbeei_contig15108:3..446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15108.1.1 ID=mRNA_P-wetherbeei_contig15108.1.1|Name=mRNA_P-wetherbeei_contig15108.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig15108:3..446+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCGGCGGCGCTGCGCGGCGGGAGCCGGGCGAATGTCACGAGACCTTTT CGTGCCGCTGTCGTTTGTCAGCTTCAACGCGATGGACCTGGCCGGCCGCA TCCTGGCCGGCTCCCGAAGCCATGTTGTGCCTGTTGGCCGGCTGTGGCTG GCGGCGGCGGCGCGCGTCGTCTTCGTGCCGCTGTTTCTCATCTGTGCCGT GGCTGGCTCCCGCCTCCCGACCGTTTTCCCGGCCGACGGCTTCCCCGTCT TCTTCATGGTGACGTTCGCGCTCTCCAACGGGCTGCTGAGCAGCCGGGCC ATGATGGACGGGCCCGGGACGGTTTCGGTCCACGACCGGGAGCTGGCCGG CACTGCCATGGTGCTGAGCCTGAACGGCGGGCTGCTGGCGGGGTCACTGC TCAGCTTCTTGGCGCTCTACATCAGCACCGGCTCCTTCGACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15108:3..446+

>mRNA_P-wetherbeei_contig15108.1.1 ID=mRNA_P-wetherbeei_contig15108.1.1|Name=mRNA_P-wetherbeei_contig15108.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig15108:3..446+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCGGCGGCGCTGCGCGGCGGGAGCCGGGCGAATGTCACGAGACCTTTT
CGTGCCGCTGTCGTTTGTCAGCTTCAACGCGATGGACCTGGCCGGCCGCA
TCCTGGCCGGCTCCCGAAGCCATGTTGTGCCTGTTGGCCGGCTGTGGCTG
GCGGCGGCGGCGCGCGTCGTCTTCGTGCCGCTGTTTCTCATCTGTGCCGT
GGCTGGCTCCCGCCTCCCGACCGTTTTCCCGGCCGACGGCTTCCCCGTCT
TCTTCATGGTGACGTTCGCGCTCTCCAACGGGCTGCTGAGCAGCCGGGCC
ATGATGGACGGGCCCGGGACGGTTTCGGTCCACGACCGGGAGCTGGCCGG
CACTGCCATGGTGCTGAGCCTGAACGGCGGGCTGCTGGCGGGGTCACTGC
TCAGCTTCTTGGCGCTCTACATCAGCACCGGCTCCTTCGACTGA
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