mRNA_P-wetherbeei_contig15098.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15098.1.1
Unique NamemRNA_P-wetherbeei_contig15098.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15098.1.1 vs. uniprot
Match: A0A3B1ANR5_9ZZZZ (Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1ANR5_9ZZZZ)

HSP 1 Score: 147 bits (372), Expect = 1.070e-40
Identity = 76/130 (58.46%), Postives = 93/130 (71.54%), Query Frame = 1
Query:   28 LSHFLPLLAFVVIVLGAYVRLSDAGLGCPDWPGCYGHVTVPSHDVDIHLQHPDWHARPLEAGKAWREMTHRYLASALGLGIVVLAAVALNASQRRAAGVSPVV--FLLVPLVVFQGLLGMWTVTLLLKPL 411
            L+ F  +LA VVIVLGAY RLSDAGLGCPDWP CYGH+ VP H  D+   +  +  RP+EA KAW+EM HRY AS LGL IV++A +A+   +R      P++    LV LV+FQGLLGMWTVTLLLKP+
Sbjct:    9 LNLFAVVLALVVIVLGAYTRLSDAGLGCPDWPVCYGHIGVPEHATDVAKANQAYPDRPVEAAKAWKEMIHRYFASTLGLVIVIMALIAIFRRKRNLDATQPIITPVFLVALVIFQGLLGMWTVTLLLKPI 138          
BLAST of mRNA_P-wetherbeei_contig15098.1.1 vs. uniprot
Match: UPI001FF768BE (COX15/CtaA family protein n=1 Tax=Flagellatimonas centrodinii TaxID=2806210 RepID=UPI001FF768BE)

HSP 1 Score: 140 bits (354), Expect = 3.430e-38
Identity = 74/128 (57.81%), Postives = 88/128 (68.75%), Query Frame = 1
Query:   28 LSHFLPLLAFVVIVLGAYVRLSDAGLGCPDWPGCYGHVTVPSHDVDIHLQHPDWHARPLEAGKAWREMTHRYLASALGLGIVVLAAVALNASQRRAAGVSPVVFLLVPLVVFQGLLGMWTVTLLLKPL 411
            L+    +L   V+VLGAYVRLSDAGLGCPDWPGCYGHVT+P H  D+      +  RP+EA KAW+EM HRYLAS LGL IV++A +       R   V P  + LV LV+FQG+LGMWTVT  LKPL
Sbjct:    7 LTTLATVLCLCVVVLGAYVRLSDAGLGCPDWPGCYGHVTIPQHVDDVARAEARFPERPVEAAKAWKEMIHRYLASTLGLLIVIMALMRTRVRDGRLPAVLP--WALVGLVIFQGMLGMWTVTWQLKPL 132          
BLAST of mRNA_P-wetherbeei_contig15098.1.1 vs. uniprot
Match: I7ZH83_9GAMM (Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 TaxID=1172194 RepID=I7ZH83_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 8.580e-38
Identity = 76/122 (62.30%), Postives = 87/122 (71.31%), Query Frame = 1
Query:   46 LLAFVVIVLGAYVRLSDAGLGCPDWPGCYGHVTVPSHDVDIHLQHPDWHARPLEAGKAWREMTHRYLASALGLGIVVLAAVALNASQRRAAGVSPVVFLLVPLVVFQGLLGMWTVTLLLKPL 411
            LL FVV+V GA+VRLSDAGLGCPDWPGCYGHV VP  D D+      +  RP+EA KAW+EM HRYLAS LG  IV LA +    S R       + ++LV LVVFQG+LGMWTVTLLLKPL
Sbjct:   13 LLCFVVVVFGAFVRLSDAGLGCPDWPGCYGHVGVPEADHDVAQAQQAFPERPVEAHKAWKEMIHRYLASTLGFLIVALALM----STRIKGAPKKLPWVLVGLVVFQGMLGMWTVTLLLKPL 130          
BLAST of mRNA_P-wetherbeei_contig15098.1.1 vs. uniprot
Match: UPI0008DAD602 (COX15/CtaA family protein n=1 Tax=Halofilum ochraceum TaxID=1611323 RepID=UPI0008DAD602)

HSP 1 Score: 139 bits (351), Expect = 1.040e-37
Identity = 76/123 (61.79%), Postives = 91/123 (73.98%), Query Frame = 1
Query:   46 LLAFVVIVLGAYVRLSDAGLGCPDWPGCYGHVTVPSHDVDIHLQHPDWHARPLEAGKAWREMTHRYLASALGLGIVVLAAVALNASQRRAAGVSPVVFL-LVPLVVFQGLLGMWTVTLLLKPL 411
            LL   V+VLGA+VRLSDAGLGCPDWPGCYGH+ VP  + ++   +  W  RP++  KAW+EM HRY+A ALGL I V+AAVAL   +RR  GV   + L LV LV+FQ LLGMWTVTLLLKPL
Sbjct:   16 LLTLCVVVLGAWVRLSDAGLGCPDWPGCYGHLDVPRVEAEVDAANQVWPERPVDTAKAWKEMVHRYVAGALGLLIAVIAAVAL---RRRRQGVPVGLPLALVGLVIFQALLGMWTVTLLLKPL 135          
BLAST of mRNA_P-wetherbeei_contig15098.1.1 vs. uniprot
Match: B5JYI8_9GAMM (Cytochrome oxidase assembly family protein/cell division protein FtsY n=1 Tax=gamma proteobacterium HTCC5015 TaxID=391615 RepID=B5JYI8_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 1.210e-37
Identity = 76/121 (62.81%), Postives = 92/121 (76.03%), Query Frame = 1
Query:   49 LAFVVIVLGAYVRLSDAGLGCPDWPGCYGHVTVPSHDVDIHLQHPDWHARPLEAGKAWREMTHRYLASALGLGIVVLAAVALNASQRRAAGVSP-VVFLLVPLVVFQGLLGMWTVTLLLKP 408
            L  VV+VLGAYVRLSDAGLGCPDWPGCYG + VPS + ++   +  +  RP+EA KAW+EM HRY AS LGL IVV+A VA     +R AGVSP +  +LV LV+FQGLLGMWTVTLL++P
Sbjct:   16 LTLVVVVLGAYVRLSDAGLGCPDWPGCYGQIGVPSAEHEVAAANSAYPERPVEAHKAWKEMIHRYAASTLGLLIVVMAGVAWF---KRKAGVSPWLPTMLVALVIFQGLLGMWTVTLLVQP 133          
BLAST of mRNA_P-wetherbeei_contig15098.1.1 vs. uniprot
Match: A0A2E5NKW3_9PROT (Cytochrome B n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5NKW3_9PROT)

HSP 1 Score: 139 bits (349), Expect = 1.740e-37
Identity = 72/121 (59.50%), Postives = 91/121 (75.21%), Query Frame = 1
Query:   49 LAFVVIVLGAYVRLSDAGLGCPDWPGCYGHVTVPSHDVDIHLQHPDWHARPLEAGKAWREMTHRYLASALGLGIVVLAAVA-LNASQRRAAGVSPVVFLLVPLVVFQGLLGMWTVTLLLKP 408
            LAF+V+ +GA+VRL+DAGLGCPDWPGCYG +TVP+ D++      ++  RPLEAGKAWREM HRYLAS LG   V+LA +A LN    +     P  ++LV +V+FQG+LGMWTVTLLLKP
Sbjct:   15 LAFLVVTIGAWVRLTDAGLGCPDWPGCYGQLTVPNDDIEFSEALSNFPERPLEAGKAWREMVHRYLASVLGFLCVLLAGLAWLNRRDPKQETNLP--YILVAVVIFQGILGMWTVTLLLKP 133          
BLAST of mRNA_P-wetherbeei_contig15098.1.1 vs. uniprot
Match: UPI0004095C01 (COX15/CtaA family protein n=2 Tax=Solimonas TaxID=413435 RepID=UPI0004095C01)

HSP 1 Score: 139 bits (351), Expect = 2.460e-37
Identity = 76/130 (58.46%), Postives = 91/130 (70.00%), Query Frame = 1
Query:   22 RLLSHFLPLLAFVVIVLGAYVRLSDAGLGCPDWPGCYGHVTVPSHDVDIHLQHPDWHARPLEAGKAWREMTHRYLASALGLGIVVLAAVALNASQRRAAGVSPVVFLLVPLVVFQGLLGMWTVTLLLKPL 411
            R L+ F  +  F ++V+GAYVRLSDAGLGCPDWPGCYGH+TVP  + +I      +  RP+EA KAW+EM HRYLA  LGL IV LA ++L     R   V P  +LLV LV+FQGLLGMWTVT  LKPL
Sbjct:   19 RRLNLFAVVWCFCLVVVGAYVRLSDAGLGCPDWPGCYGHLTVPGAEHEIAAAEARYPDRPVEAPKAWKEMVHRYLAETLGLFIVALALMSLFIKAARRPRVLP--WLLVALVIFQGLLGMWTVTWQLKPL 146          
BLAST of mRNA_P-wetherbeei_contig15098.1.1 vs. uniprot
Match: A0A1Z9UK57_9GAMM (Uncharacterized protein n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1Z9UK57_9GAMM)

HSP 1 Score: 138 bits (348), Expect = 2.620e-37
Identity = 79/138 (57.25%), Postives = 97/138 (70.29%), Query Frame = 1
Query:    1 LSMTRSLRLLSHFLPLLAFVVIVLGAYVRLSDAGLGCPDWPGCYGHVTVPSHDVDIHLQHPDWHARPLEAGKAWREMTHRYLASALGLGIVVLAAVALNASQRRAAGVSP-VVFLLVPLVVFQGLLGMWTVTLLLKPL 411
            +++ R+   LS  L +L  VV+V GAYVR +DAGLGCPDWPGCYG + VP+ + ++         RPLE GKAWREM HRYLASALG GI+ LA       +R+  GV+P V + LVPLV+FQG LGMWTVTLLLKPL
Sbjct:    1 MTIRRTYLNLSIVLIVLTMVVMVFGAYVRXTDAGLGCPDWPGCYGKLLVPA-EKNLSADDXWLXQRPLEVGKAWREMIHRYLASALGXGILCLAGXTFX--RRQTIGVNPSVAYCLVPLVMFQGALGMWTVTLLLKPL 135          
BLAST of mRNA_P-wetherbeei_contig15098.1.1 vs. uniprot
Match: A0A5J4EBH0_9BACT (Heme A synthase n=2 Tax=Bacteria TaxID=2 RepID=A0A5J4EBH0_9BACT)

HSP 1 Score: 139 bits (349), Expect = 2.900e-37
Identity = 78/133 (58.65%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   13 RSLRLLSHFLPLLAFVVIVLGAYVRLSDAGLGCPDWPGCYGHVTVPSHDVDIHLQHPDWHARPLEAGKAWREMTHRYLASALGLGIVVLAAVAL-NASQRRAAGVSPVVFLLVPLVVFQGLLGMWTVTLLLKP 408
            + L LL+ FL L    V+VLGAY RLSDAGLGCPDWPGCYG ++VP+   DI      +  RPLE  KAW EM HRYLA+ LGL ++ LA +AL N  +++     PV  LLVPL+VFQ LLGMWTVTLLLKP
Sbjct:   24 KKLALLATFLTL---AVVVLGAYTRLSDAGLGCPDWPGCYGQISVPTTASDISTAEQAYPERPLEPAKAWIEMVHRYLAAILGLMVMALALMALLNRKEKKQPVALPV--LLVPLIVFQALLGMWTVTLLLKP 151          
BLAST of mRNA_P-wetherbeei_contig15098.1.1 vs. uniprot
Match: A0A318EGU8_9GAMM (Cytochrome c oxidase assembly protein subunit 15 n=1 Tax=Sinimarinibacterium flocculans TaxID=985250 RepID=A0A318EGU8_9GAMM)

HSP 1 Score: 138 bits (348), Expect = 4.700e-37
Identity = 77/130 (59.23%), Postives = 89/130 (68.46%), Query Frame = 1
Query:   22 RLLSHFLPLLAFVVIVLGAYVRLSDAGLGCPDWPGCYGHVTVPSHDVDIHLQHPDWHARPLEAGKAWREMTHRYLASALGLGIVVLAAVALNASQRRAAGVSPVVFLLVPLVVFQGLLGMWTVTLLLKPL 411
            R L+    LL FVVIV GAYVRLSDAGLGCPDWPGCYGH+T+P  D ++      +  RP+EA KAW+EM HRY+AS LGL IV LA  A          V P  +L+V LVVFQG+LGMWTVT  LKPL
Sbjct:    5 RRLNLLTLLLCFVVIVFGAYVRLSDAGLGCPDWPGCYGHLTIPQADHEVATAQERFPERPVEAPKAWKEMIHRYIASTLGLLIVALAFGATRLRDPARPRVLP--WLMVGLVVFQGILGMWTVTWQLKPL 132          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15098.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3B1ANR5_9ZZZZ1.070e-4058.46Heme A synthase, cytochrome oxidase biogenesis pro... [more]
UPI001FF768BE3.430e-3857.81COX15/CtaA family protein n=1 Tax=Flagellatimonas ... [more]
I7ZH83_9GAMM8.580e-3862.30Uncharacterized protein n=1 Tax=Hydrocarboniphaga ... [more]
UPI0008DAD6021.040e-3761.79COX15/CtaA family protein n=1 Tax=Halofilum ochrac... [more]
B5JYI8_9GAMM1.210e-3762.81Cytochrome oxidase assembly family protein/cell di... [more]
A0A2E5NKW3_9PROT1.740e-3759.50Cytochrome B n=1 Tax=Rhodospirillaceae bacterium T... [more]
UPI0004095C012.460e-3758.46COX15/CtaA family protein n=2 Tax=Solimonas TaxID=... [more]
A0A1Z9UK57_9GAMM2.620e-3757.25Uncharacterized protein n=3 Tax=Gammaproteobacteri... [more]
A0A5J4EBH0_9BACT2.900e-3758.65Heme A synthase n=2 Tax=Bacteria TaxID=2 RepID=A0A... [more]
A0A318EGU8_9GAMM4.700e-3759.23Cytochrome c oxidase assembly protein subunit 15 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15098contigP-wetherbeei_contig15098:3..413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1123257.AUFV01000009_gene2233
PFAMsCOX15-CtaA
Model size411
Max annot lvl135614|Xanthomonadales
KEGG rclassRC00769
KEGG koko:K02259
KEGG TC3.D.4.4
KEGG ReactionR07412
KEGG Pathwayko00190,ko00860,ko01100,ko01110,ko02020,ko04714,map00190,map00860,map01100,map01110,map02020,map04714
KEGG ModuleM00154
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.02e-38
EggNOG OGsCOG1612@1|root,COG1612@2|Bacteria,1MVJ4@1224|Proteobacteria,1RQWB@1236|Gammaproteobacteria,1X432@135614|Xanthomonadales
Descriptioncytochrome oxidase assembly
Cds size405
COG categoryO
BRITEko00000,ko00001,ko00002,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.3590503-CDS-P-wetherbeei_contig15098:2..4071683186044.3590503-CDS-P-wetherbeei_contig15098:2..407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15098 3..407 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.3754666-UTR-P-wetherbeei_contig15098:407..4131683186044.3754666-UTR-P-wetherbeei_contig15098:407..413Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15098 408..413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15098.1.1prot_P-wetherbeei_contig15098.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15098 3..407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15098.1.1

>prot_P-wetherbeei_contig15098.1.1 ID=prot_P-wetherbeei_contig15098.1.1|Name=mRNA_P-wetherbeei_contig15098.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MTRSLRLLSHFLPLLAFVVIVLGAYVRLSDAGLGCPDWPGCYGHVTVPSH
DVDIHLQHPDWHARPLEAGKAWREMTHRYLASALGLGIVVLAAVALNASQ
RRAAGVSPVVFLLVPLVVFQGLLGMWTVTLLLKPL
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mRNA from alignment at P-wetherbeei_contig15098:3..413-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15098.1.1 ID=mRNA_P-wetherbeei_contig15098.1.1|Name=mRNA_P-wetherbeei_contig15098.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig15098:3..413- (Phaeothamnion wetherbeei SAG_119_79)
CTGAGCATGACCCGCAGCCTACGCCTCCTCTCCCATTTCCTGCCGCTGCT TGCGTTCGTCGTCATCGTGCTCGGCGCTTATGTGCGCTTGAGCGACGCCG GGCTGGGTTGCCCCGACTGGCCAGGCTGTTACGGGCACGTCACCGTGCCC AGCCATGATGTGGACATTCACCTCCAACACCCGGACTGGCATGCGCGCCC GCTTGAGGCCGGCAAGGCCTGGCGCGAAATGACCCATCGCTATCTTGCCA GCGCCTTAGGTCTCGGCATCGTGGTGCTGGCGGCTGTTGCTTTGAATGCT TCGCAGCGGCGTGCTGCCGGCGTGAGCCCGGTGGTGTTCCTGCTCGTACC GCTGGTGGTCTTTCAGGGTTTGCTCGGTATGTGGACGGTCACCTTGCTGC TGAAACCGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15098:3..413-

>mRNA_P-wetherbeei_contig15098.1.1 ID=mRNA_P-wetherbeei_contig15098.1.1|Name=mRNA_P-wetherbeei_contig15098.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig15098:3..413- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCGCAGCCTACGCCTCCTCTCCCATTTCCTGCCGCTGCTTGCGTT
CGTCGTCATCGTGCTCGGCGCTTATGTGCGCTTGAGCGACGCCGGGCTGG
GTTGCCCCGACTGGCCAGGCTGTTACGGGCACGTCACCGTGCCCAGCCAT
GATGTGGACATTCACCTCCAACACCCGGACTGGCATGCGCGCCCGCTTGA
GGCCGGCAAGGCCTGGCGCGAAATGACCCATCGCTATCTTGCCAGCGCCT
TAGGTCTCGGCATCGTGGTGCTGGCGGCTGTTGCTTTGAATGCTTCGCAG
CGGCGTGCTGCCGGCGTGAGCCCGGTGGTGTTCCTGCTCGTACCGCTGGT
GGTCTTTCAGGGTTTGCTCGGTATGTGGACGGTCACCTTGCTGCTGAAAC
CGCTG
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