mRNA_P-wetherbeei_contig15094.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15094.2.1
Unique NamemRNA_P-wetherbeei_contig15094.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig15094.2.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 133 bits (335), Expect = 1.800e-29
Identity = 112/351 (31.91%), Postives = 162/351 (46.15%), Query Frame = 1 
Query:  421 PSPARRFSWTLSTASVAEPLDSVSIEGDLNVLVFETVCQVPAEWVESFCCAVCHVLLLLFDSVSPAAAPSPAAELPPIPSVPSSLPADFLPAGSGITLERAVKLLHLVAALLLGADGARSRRERFAQFAKGELGPLIADLLRFSRRQRPPAQAVPPGDAEVPMVQRAASFLRRHRGIGKAAQALTGTPMAPRTVGTALQLEAKHPHEDPELISAAAAEALAR-------------AEPPFRAQSFLEALKVADPTSSPGPDGLRYRFLQQATSEDVAGRSTLLGLLSRLASLCFEQPELLPASFFVLHASARLVAVGEKVRPIAMCGVLRRLMSSVFCRDNRGLFQELFEP 1434
            PSP++      S   V E LD + I  +L+ L F T   +  E    F   + H + L   +     A     E PP        PAD         +ERA KLLH+  ALL   DG  +R++R+  FA G+L  ++A LL ++++   P ++   G+ E     RA     +  G+ KAA  L   P  PR   T   L  KHP E  + I+ A  EA AR              E PF  ++    ++  +P  SPGP GLR+  LQ + + +      L   +++L S+ F+   L P SF+ LH SA L A+G+K RPIA+  + RR++  V CR       E FEP
Sbjct:  940 PSPSQPTLTPWSLDDVGETLDRLPIS-ELSTLSFTTSKHLKREHRRPFGLFLLHAIKLFLHAHGVLRASG--TEEPP--------PAD------NTRMERATKLLHITPALLQSTDGRLTRQQRYELFAAGDLEMMLAWLLSYAKQ---PTRSPRQGE-EASKHARAEHLAHQRGGLSKAASTLLAPPSPPRNAETLETLRKKHPGESQQEIAEACCEATARLSRPPPGVSRIEAVEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPE------LCEAIAKLCSVIFDGSHL-PDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEP 1262
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BLAST of mRNA_P-wetherbeei_contig15094.2.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 4.890e-24
Identity = 81/233 (34.76%), Postives = 115/233 (49.36%), Query Frame = 1 
Query:  778 SRRERFAQFAKGELGPLIADLLRFSRRQRPPAQAVPPGDAEVPMVQRAASFLRRHRGIGKAAQALTGTPMAPRTVGTALQLEAKHPHEDPELISAA---------------AAEALARAEPPFRAQSFLEALKVADPTSSPGPDGLRYRFLQQATSEDVAGRSTLLGLLSRLASLCFEQPELLPASFFVLHASARLVAVGEKVRPIAMCGVLRRLMSSVFCRDNRGLFQELFE 1431
            +R  RF +FA G+L   IA L+ + + +R    A    D E    +RA        GI KAA AL     +PR   T   L   HP+EDP+ I+ A                 +++A  + PF  +   + +K A+P S+PGPDGLR+ +LQ     D    +     L+  +   F   + LP  F+ LH SA L A+GEK RPIA+ GVLRR++S  FCR  +G    +FE
Sbjct:    2 NRVSRFNRFANGDLSEPIAWLMMYEKNRRLQYYA----DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIETHKIDSVAEPDEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTET-----LADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFE 225
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BLAST of mRNA_P-wetherbeei_contig15094.2.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 9.050e-24
Identity = 82/233 (35.19%), Postives = 116/233 (49.79%), Query Frame = 1 
Query:  778 SRRERFAQFAKGELGPLIADLLRFSRRQRPPAQAVPPGDAEVPMVQRAASFLRRHRGIGKAAQALTGTPMAPRTVGTALQLEAKHPHEDPELISAA---------------AAEALARAEPPFRAQSFLEALKVADPTSSPGPDGLRYRFLQQATSEDVAGRSTLLGLLSRLASLCFEQPELLPASFFVLHASARLVAVGEKVRPIAMCGVLRRLMSSVFCRDNRGLFQELFE 1431
            +R  RF +FA G+L   IA L+ + + +R    A    D E    +RA        GI KAA AL     +PR   T   L   HP+EDP+ I+ A                 +++A A+ PF  +   + +K A+P S+PGPDGLR+ +LQ     D    +     L+  +   F   + LP  F+ LH SA L A+GEK RPIA+ GVLRR++S  FCR  +G    +FE
Sbjct:    2 NRVSRFNRFANGDLSEPIAWLMMYEKNRRLQYYA----DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTET-----LADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFE 225
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BLAST of mRNA_P-wetherbeei_contig15094.2.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.400e-23
Identity = 82/233 (35.19%), Postives = 116/233 (49.79%), Query Frame = 1 
Query:  778 SRRERFAQFAKGELGPLIADLLRFSRRQRPPAQAVPPGDAEVPMVQRAASFLRRHRGIGKAAQALTGTPMAPRTVGTALQLEAKHPHEDPELISAA---------------AAEALARAEPPFRAQSFLEALKVADPTSSPGPDGLRYRFLQQATSEDVAGRSTLLGLLSRLASLCFEQPELLPASFFVLHASARLVAVGEKVRPIAMCGVLRRLMSSVFCRDNRGLFQELFE 1431
            +R  RF +FA G+L   IA L+ + + +R    A    D E    +RA        GI KAA AL     +PR   T   L   HP+EDP+ I+ A                 +++A A+ PF  +   + +K A+P S+PGPDGLR+ +LQ     D     +    L+  +   F   + LP  F+ LH SA L A+GEK RPIA+ GVLRR++S  FCR  +G    +FE
Sbjct:    2 NRVSRFNRFANGDLSEPIAWLMMYEKNRRLRYYA----DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKVAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSD-----SFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFE 225
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BLAST of mRNA_P-wetherbeei_contig15094.2.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.710e-23
Identity = 81/233 (34.76%), Postives = 115/233 (49.36%), Query Frame = 1 
Query:  778 SRRERFAQFAKGELGPLIADLLRFSRRQRPPAQAVPPGDAEVPMVQRAASFLRRHRGIGKAAQALTGTPMAPRTVGTALQLEAKHPHEDPELISAA---------------AAEALARAEPPFRAQSFLEALKVADPTSSPGPDGLRYRFLQQATSEDVAGRSTLLGLLSRLASLCFEQPELLPASFFVLHASARLVAVGEKVRPIAMCGVLRRLMSSVFCRDNRGLFQELFE 1431
            +R  RF +FA G+L   IA L+ + + +R    A    D E    +RA        GI KAA AL     +PR   T   L   HP+EDP+ I+ A                 +++A A+ PF  +   + +K A+P S+PGPDGLR+ +LQ     D    +     L+  +   F   + LP  F+ LH SA L A+GEK RPIA+ GVLRR++S  FC   +G    +FE
Sbjct:    2 NRVSRFNRFANGDLSEPIAWLMMYEKNRRLQYYA----DTEDNRQRRATRLAHESGGITKAASALISPAPSPRNNDTLEHLRNLHPNEDPDDIATAWDSSIKAAGDRIKTHKIDSVAEADEPFEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTET-----LADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFE 225
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BLAST of mRNA_P-wetherbeei_contig15094.2.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.850e-5
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 
Query: 1279 LPASFFVLHASARLVAVGEKVRPIAMCGVLRRLMSSVFCRDNRGLFQELFE 1431
            LP  F+ LH SA L A+GEK RPIA+ GVLRR++S  FCR  +G    +FE
Sbjct:   23 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFE 73
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15094.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN1.800e-2931.91Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5KQ62_9PHAE4.890e-2434.76Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JCM0_9PHAE9.050e-2435.19Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE1.400e-2335.19Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KGJ4_9PHAE2.710e-2334.76Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSY9_9PHAE3.850e-554.90Reverse transcriptase domain-containing protein (F... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15094contigP-wetherbeei_contig15094:4..1497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1436
Hectar predicted targeting categoryother localisation
Exons2
Cds size1434
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.2655115-CDS-P-wetherbeei_contig15094:3..10891683186044.2655115-CDS-P-wetherbeei_contig15094:3..1089Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15094 4..1089 +
1683186044.2785418-CDS-P-wetherbeei_contig15094:1149..14971683186044.2785418-CDS-P-wetherbeei_contig15094:1149..1497Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15094 1150..1497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15094.2.1prot_P-wetherbeei_contig15094.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15094 4..1497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15094.2.1

>prot_P-wetherbeei_contig15094.2.1 ID=prot_P-wetherbeei_contig15094.2.1|Name=mRNA_P-wetherbeei_contig15094.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=478bp
FARLPGLRDNSVECPACGIWTAYASLSGHSRSELCKRKAAARVSPARAPV
LSVPPPVFVFHAQVSQPAQPVQPIQPAQPVPRVRNPYFPNPDDGSGGVGG
GSSSRASAPLPAPKPPTAGGRSQADASAACSGPTDVPALPPSPARRFSWT
LSTASVAEPLDSVSIEGDLNVLVFETVCQVPAEWVESFCCAVCHVLLLLF
DSVSPAAAPSPAAELPPIPSVPSSLPADFLPAGSGITLERAVKLLHLVAA
LLLGADGARSRRERFAQFAKGELGPLIADLLRFSRRQRPPAQAVPPGDAE
VPMVQRAASFLRRHRGIGKAAQALTGTPMAPRTVGTALQLEAKHPHEDPE
LISAAAAEALARAEPPFRAQSFLEALKVADPTSSPGPDGLRYRFLQQATS
EDVAGRSTLLGLLSRLASLCFEQPELLPASFFVLHASARLVAVGEKVRPI
AMCGVLRRLMSSVFCRDNRGLFQELFEP
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mRNA from alignment at P-wetherbeei_contig15094:4..1497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15094.2.1 ID=mRNA_P-wetherbeei_contig15094.2.1|Name=mRNA_P-wetherbeei_contig15094.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1494bp|location=Sequence derived from alignment at P-wetherbeei_contig15094:4..1497+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGCGCGACTCCCTGGCCTACGCGACAATTCGGTAGAGTGCCCTGCTTG
TGGAATTTGGACTGCCTATGCGTCTCTTTCCGGCCATTCCCGATCGGAGC
TTTGCAAGAGGAAAGCTGCGGCACGTGTTTCGCCTGCTAGGGCTCCTGTT
CTTTCTGTTCCCCCTCCAGTCTTCGTGTTTCACGCCCAAGTTTCCCAGCC
GGCCCAGCCCGTCCAGCCAATCCAACCCGCCCAACCGGTCCCGCGAGTCC
GCAACCCATATTTTCCGAACCCGGATGACGGGAGCGGTGGCGTTGGGGGT
GGCAGCAGCAGCCGCGCTAGCGCGCCTCTGCCGGCCCCCAAGCCTCCGAC
TGCTGGCGGAAGAAGCCAGGCTGACGCATCTGCTGCTTGTTCTGGCCCTA
CGGATGTCCCAGCTTTGCCGCCATCCCCTGCCCGCCGCTTCTCCTGGACG
CTATCGACCGCGTCCGTTGCCGAGCCACTCGACAGTGTTTCAATTGAGGG
AGATCTCAACGTGTTGGTGTTTGAGACGGTCTGCCAGGTCCCTGCGGAGT
GGGTTGAGTCCTTTTGCTGTGCCGTTTGCCATGTGCTTCTTCTCCTCTTT
GACTCTGTTTCGCCGGCCGCAGCCCCCAGTCCCGCCGCCGAATTGCCTCC
AATTCCTAGCGTCCCGTCCAGTCTGCCTGCCGACTTTCTGCCTGCGGGCT
CTGGCATCACTCTCGAGCGTGCCGTAAAGCTCCTGCACCTTGTTGCGGCG
CTGCTTCTTGGCGCCGATGGCGCCCGGTCTCGGCGTGAGAGATTTGCCCA
ATTTGCCAAGGGGGAGCTGGGACCGCTCATCGCGGACCTCCTGCGGTTTA
GCCGCCGCCAGCGGCCTCCCGCACAGGCCGTCCCGCCAGGAGACGCTGAG
GTCCCGATGGTGCAGCGGGCAGCCTCTTTCCTCCGCCGCCACCGCGGCAT
TGGGAAGGCCGCGCAAGCCCTGACCGGAACCCCGATGGCGCCGCGCACCG
TCGGCACGGCATTGCAGCTTGAGGCAAAGCATCCGCACGAAGATCCAGAG
CTGATCTCGGCGGCAGCAGCTGAAGCCCTTGCGCGCGTCGCTGCCGACGC
TCCGGACGCGGGCGCAGGCGCCGCCTCTTCCCCGTCTGATGCCGAGGCTG
AACCCCCGTTCCGAGCCCAGTCCTTCCTTGAGGCCCTCAAGGTGGCCGAT
CCGACATCGAGCCCGGGTCCCGACGGATTGCGCTACCGCTTCCTTCAGCA
AGCCACCAGTGAAGATGTCGCTGGTCGGTCGACCCTGCTGGGCCTCCTTT
CGCGGTTAGCAAGTCTCTGCTTCGAGCAGCCCGAGCTGCTCCCGGCTTCC
TTTTTTGTCTTGCATGCCTCCGCCCGTCTCGTTGCCGTTGGGGAAAAGGT
ACGTCCAATTGCCATGTGTGGAGTTCTCCGCCGCCTGATGTCCTCTGTCT
TTTGCCGAGATAACCGGGGCCTGTTCCAAGAGTTGTTTGAACCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig15094:4..1497+

>mRNA_P-wetherbeei_contig15094.2.1 ID=mRNA_P-wetherbeei_contig15094.2.1|Name=mRNA_P-wetherbeei_contig15094.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1434bp|location=Sequence derived from alignment at P-wetherbeei_contig15094:4..1497+ (Phaeothamnion wetherbeei SAG_119_79)
TTCGCGCGACTCCCTGGCCTACGCGACAATTCGGTAGAGTGCCCTGCTTG
TGGAATTTGGACTGCCTATGCGTCTCTTTCCGGCCATTCCCGATCGGAGC
TTTGCAAGAGGAAAGCTGCGGCACGTGTTTCGCCTGCTAGGGCTCCTGTT
CTTTCTGTTCCCCCTCCAGTCTTCGTGTTTCACGCCCAAGTTTCCCAGCC
GGCCCAGCCCGTCCAGCCAATCCAACCCGCCCAACCGGTCCCGCGAGTCC
GCAACCCATATTTTCCGAACCCGGATGACGGGAGCGGTGGCGTTGGGGGT
GGCAGCAGCAGCCGCGCTAGCGCGCCTCTGCCGGCCCCCAAGCCTCCGAC
TGCTGGCGGAAGAAGCCAGGCTGACGCATCTGCTGCTTGTTCTGGCCCTA
CGGATGTCCCAGCTTTGCCGCCATCCCCTGCCCGCCGCTTCTCCTGGACG
CTATCGACCGCGTCCGTTGCCGAGCCACTCGACAGTGTTTCAATTGAGGG
AGATCTCAACGTGTTGGTGTTTGAGACGGTCTGCCAGGTCCCTGCGGAGT
GGGTTGAGTCCTTTTGCTGTGCCGTTTGCCATGTGCTTCTTCTCCTCTTT
GACTCTGTTTCGCCGGCCGCAGCCCCCAGTCCCGCCGCCGAATTGCCTCC
AATTCCTAGCGTCCCGTCCAGTCTGCCTGCCGACTTTCTGCCTGCGGGCT
CTGGCATCACTCTCGAGCGTGCCGTAAAGCTCCTGCACCTTGTTGCGGCG
CTGCTTCTTGGCGCCGATGGCGCCCGGTCTCGGCGTGAGAGATTTGCCCA
ATTTGCCAAGGGGGAGCTGGGACCGCTCATCGCGGACCTCCTGCGGTTTA
GCCGCCGCCAGCGGCCTCCCGCACAGGCCGTCCCGCCAGGAGACGCTGAG
GTCCCGATGGTGCAGCGGGCAGCCTCTTTCCTCCGCCGCCACCGCGGCAT
TGGGAAGGCCGCGCAAGCCCTGACCGGAACCCCGATGGCGCCGCGCACCG
TCGGCACGGCATTGCAGCTTGAGGCAAAGCATCCGCACGAAGATCCAGAG
CTGATCTCGGCGGCAGCAGCTGAAGCCCTTGCGCGCGCTGAACCCCCGTT
CCGAGCCCAGTCCTTCCTTGAGGCCCTCAAGGTGGCCGATCCGACATCGA
GCCCGGGTCCCGACGGATTGCGCTACCGCTTCCTTCAGCAAGCCACCAGT
GAAGATGTCGCTGGTCGGTCGACCCTGCTGGGCCTCCTTTCGCGGTTAGC
AAGTCTCTGCTTCGAGCAGCCCGAGCTGCTCCCGGCTTCCTTTTTTGTCT
TGCATGCCTCCGCCCGTCTCGTTGCCGTTGGGGAAAAGGTACGTCCAATT
GCCATGTGTGGAGTTCTCCGCCGCCTGATGTCCTCTGTCTTTTGCCGAGA
TAACCGGGGCCTGTTCCAAGAGTTGTTTGAACCC
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