mRNA_P-wetherbeei_contig1509.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1509.1.1
Unique NamemRNA_P-wetherbeei_contig1509.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1509.1.1 vs. uniprot
Match: A0A6H5KEM7_9PHAE (Tafazzin family protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM7_9PHAE)

HSP 1 Score: 283 bits (723), Expect = 4.110e-85
Identity = 145/260 (55.77%), Postives = 174/260 (66.92%), Query Frame = 3
Query:  453 LNRVRVVEGRDVLLDAVLRRPAGRALLTVSNHQSVYDDPGLWAAILPFWRTGAAKMRWALCTDDIYYASSLLTPMLALGRTLPVKRHLGVDQPLLGKFADKLRQGEWCHIFAEGRIRQPWRFARGEPVLGGFKPGVSRILFRCKEPPLVIPMYHIGMHGVCPEEPCPAYLPAKLQTAYPAGGNRVRVYVGEPVDVWPIVLRWREGFPGQPGLGDMSGEPWGRCCAAGFDVERRCYAEIADALREAVLKLEAKARRDYFRD 1232
            LN+V     R  LLDAVL R   R LLTVSNH  VYDDPGLW+A++PFWRTG  +MRWALCTDDIYYA  +L  +   GRTLP+KR+ G++QPL   F  KL  GEW HIFAEG IRQPWRF+RGEP+LG FK G+ R+L R K+PPLV+PMYHIGMH +  E P       KL    P  G  VRVYVGEP+DV PI+ + RE       +GD+   PW +  +     E  C+ EIA  +RE VLKLEA AR+DY+ D
Sbjct:  188 LNKVEC-HNRQELLDAVLDR-GDRGLLTVSNHMCVYDDPGLWSALVPFWRTGRKRMRWALCTDDIYYAHPVLKNIFDAGRTLPIKRNRGMEQPLFKAFFQKLEGGEWGHIFAEGAIRQPWRFSRGEPILGDFKAGIGRLLLRSKDPPLVLPMYHIGMHQIASEAPTHKRGRGKLLKIMPNFGRTVRVYVGEPIDVAPIIEKCRER------IGDVRNLPWTKRSSM---EEVACHREIAAYIREHVLKLEAVARKDYYGD 436          
BLAST of mRNA_P-wetherbeei_contig1509.1.1 vs. uniprot
Match: A0A835Z8H0_9STRA (Tafazzin family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H0_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.660e-59
Identity = 115/261 (44.06%), Postives = 146/261 (55.94%), Query Frame = 3
Query:  450 VLNRVRVVEGRDVLLDAVLRRPAGRALLTVSNHQSVYDDPGLWAAILPFWRTGAAKMRWALCTDDIYYASSLLTPMLALGRTLPVKRHLGVDQPLLGKFADKLRQGEWCHIFAEGRIRQPWRFARGEPVLGGFKPGVSRILFRCKEPPLVIPMYHIGMHGVCPEEPCPAYLPAKLQTAYPAGGNRVRVYVGEPVDVWPIVLRWREGFPGQPGLGDMSGEPWGRCCAAGFDVERRCYAEIADALREAVLKLEAKARRDYFRD 1232
            VLNRVRV      L+  V  R  G  LLTVSNH SV DDPGLW AILPFWR G  KMRW+LCTDD+Y+A   L P                                               + +G+P+LG FK GV R++ RC   P+++PMYHIGMH + PE+P P    AKLQ A+  G  +VR+YVGEPV+V  I+ +W++G+ GQ G+GD+S  PW      G   E  C+ EI  A+R+AVL+LE  ARRDY+ D
Sbjct:  166 VLNRVRVTNLSG-LIRHVDHRTEGTPLLTVSNHMSVLDDPGLWGAILPFWRLGPRKMRWSLCTDDVYFAVKPLVPF----------------------------------------------YRQGQPILGDFKAGVGRLVARCSSTPVIVPMYHIGMHTIAPEQPVPRRAAAKLQRAFSVG-RQVRMYVGEPVEVEHILNKWKQGWDGQEGIGDVSKFPWSE---RGTLAELACHEEITAAIRDAVLELEKVARRDYYGD 375          
BLAST of mRNA_P-wetherbeei_contig1509.1.1 vs. uniprot
Match: A0A7S2UUF3_9STRA (Tafazzin family protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUF3_9STRA)

HSP 1 Score: 208 bits (529), Expect = 4.580e-57
Identity = 106/256 (41.41%), Postives = 152/256 (59.38%), Query Frame = 3
Query:  456 NRVRVVEGRDVLLDAVLRRPAGRALLTVSNHQSVYDDPGLWAAILPFWRTGAAKMRWALCTDDIYYASSLLTPMLALGRTLPVKRHLGVDQPLLGKFADKLRQGEWCHIFAEGRIRQPWRFARGEPVLGGFKPGVSRILFRCKEPPLVIPMYHIGMHGVCPEEPCPAYLPAKLQTA-YPAGGNRVRVYVGEPVDVWPIVLR-WRE-GFPGQPGLGDMSGEPWGRCCAAGFDVERRCYAEIADALREAVLKLEAKAR 1214
            N+V V   +++L+D V  R  G  +L+VSNH S+YDDPGLW+AI+P+WR     +R++LC DD+Y+ S  LTP+   G+ LPV R  G +Q  +  + + + +G WCHIFAEG+I QPWR+  GEPVLG  + G S++L      P +IPMYH GMH + PE+P    L      + +P GGNRV V++G+P  V  I+ + W+E G PG     + S             V R    +I   + E +L+LEA+AR
Sbjct:  177 NKV-VTHRKELLMDCVYNREPGVGILSVSNHMSMYDDPGLWSAIIPWWRMPHRLLRYSLCNDDMYFVSKYLTPIFLAGKALPVSRKAGPNQQFMKDYTEVVDEGNWCHIFAEGKINQPWRYEEGEPVLGKLRIGASKLLTHLSHSPWIIPMYHFGMHDILPEKPQKNKLRVSTPISMWPRGGNRVDVFIGKPFTVTDILEKMWQEVGGPGSVAWDNDS-------------VLRSYQDQITARITEKILELEAEAR 418          
BLAST of mRNA_P-wetherbeei_contig1509.1.1 vs. uniprot
Match: D8LB90_ECTSI (Tafazzin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB90_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 8.610e-50
Identity = 88/142 (61.97%), Postives = 102/142 (71.83%), Query Frame = 3
Query:  453 LNRVRVVEGRDVLLDAVLRRPAGRALLTVSNHQSVYDDPGLWAAILPFWRTGAAKMRWALCTDDIYYASSLLTPMLALGRTLPVKRHLGVDQPLLGKFADKLRQGEWCHIFAEGRIRQPWRFARGEPVLGGFKPGVSRILFR 878
            LN+V     R  LLDAVL R   R LLTVSNH  VYDDPGLW+A++PFWRTG  +MRWALCTDDIYYA  +L  +   GRTLP+KR  G++QPL   F  KL  GEW HIFAEG IRQPWRF+R EP+L  FK G+ R+L R
Sbjct:  179 LNKVEC-HNRQALLDAVLDR-GDRGLLTVSNHMCVYDDPGLWSALIPFWRTGRRRMRWALCTDDIYYAHPVLKNIFEAGRTLPIKRTRGMEQPLFKAFFQKLEGGEWGHIFAEGAIRQPWRFSRDEPILADFKAGIGRLLLR 318          
BLAST of mRNA_P-wetherbeei_contig1509.1.1 vs. uniprot
Match: A0A7S0U611_HEMAN (Tafazzin family protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U611_HEMAN)

HSP 1 Score: 178 bits (451), Expect = 5.070e-46
Identity = 99/266 (37.22%), Postives = 150/266 (56.39%), Query Frame = 3
Query:  450 VLNRVRVVEGRDVLLDAVLRRPAGRALLTVSNHQSVYDDPGLWAAILPFWRTGAAKMRWALCTDDIYYASSLLTPMLA-----LGRTLPVKRHLGVDQPLLGKFADKLRQGEWCHIFAEGRIRQPWRFARGEPVLGGFKPGVSRILFRC---KEPPLVIPMYHIGMHGVCPEEPCPAYLPAKLQTAYPAGGNRVRVYVGEPVDVWPIVLRWREGFP-GQPGLGDMSGEPWGRCCAAGFDVERRCYAEIADALREAVLKLEAKARRD 1220
            +LNRV + + +  L DA+ +RP G  L+TVSNHQS  D+P L++A++P W     ++RW+LC D+++Y   +L P+ A       R LP+ R   ++QP   +F DK R G WCHIF EGR+ QPW+  +   +LG  +PGV +++  C   K PPLV+P YH GMH + P+ P       K Q   P  GN++RV VGEP+DV  ++ + R G    +  LG   G  W        + +   YAE+ + +  A++ L  +  +D
Sbjct:  153 ILNRVEISDHKR-LTDAISKRPRGTPLITVSNHQSSLDEPLLFSAVIP-WPIRQWQLRWSLCNDNMFY---VLGPVFAQLFFHAARGLPIWRSQSINQPSFKEFCDKARDGGWCHIFPEGRLWQPWKLRKEGRLLGNLRPGVGKLVGHCETSKHPPLVVPFYHTGMHRILPQFPANP----KKQALPPKTGNKIRVRVGEPIDVSDLIEKHRGGREEARKELGVTDG--W-----TTTEADEALYAEVTERVEAALVALAKQVDQD 402          
BLAST of mRNA_P-wetherbeei_contig1509.1.1 vs. uniprot
Match: A0A6V1V5J4_HETAK (Tafazzin family protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V5J4_HETAK)

HSP 1 Score: 162 bits (410), Expect = 1.340e-40
Identity = 99/273 (36.26%), Postives = 139/273 (50.92%), Query Frame = 3
Query:  450 VLNRVRVVEGRDVLLDAVLRRPAGRALLTVSNHQSVYDDPGLWAAILPFWRTGAAKMRWALCTDDIYYASSLLTPMLALGRTLPVKRHLGVDQPLLGKFADKLRQGEWCHIFAEGRIRQPWRFARGEPVLGGFKPGVSRILFRCKEPPLVIPMYHIGMHGVCPEEPCPAYLPAKLQ----------TAYPAGGNRVRVYVGEPVDVWPIVLRWREGFPGQPGLGDMSGEPWGRCCAAGFDVERRCYAEIADALREAVLKLEAKARRDYFRDKG 1238
            VLN+ +V      L   +L R  G  L T SNH S+ DDPGL A  +P+           LC  D+Y+   +LT +  LG+ +PV R  G +Q  +  F +KL   +WCHIFAEG+I QPWRF R EP LG F+ G +++L    + P+ +PMYHIGMH V PE       P K Q          +A P  GN++ ++VGEP  V P + R +        LG   G  W    A      +    ++ + LRE +L++EA+AR   +   G
Sbjct:  124 VLNKTKV-HNYKTLEKLMLERDEGVGLFTYSNHHSMLDDPGLPALFMPWHSXXXXXXXXNLCNTDMYFVHPVLTHIFRLGKGMPVSRFEGPEQRYMRDFTEKLNNKDWCHIFAEGKIVQPWRFERDEPHLGEFRIGPAKVLTHQDKAPICLPMYHIGMHNVYPER---QLKPKKGQKKARGASTPISAIPRIGNQIDIFVGEPFSVEPWIERVKA-------LG-AQGVTWENDAAY-----KEIQEDLTNHLRERLLEVEAQARPYLYGGSG 379          
BLAST of mRNA_P-wetherbeei_contig1509.1.1 vs. uniprot
Match: A0A7S4DV10_9EUKA (Tafazzin family protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DV10_9EUKA)

HSP 1 Score: 161 bits (408), Expect = 1.820e-40
Identity = 95/258 (36.82%), Postives = 141/258 (54.65%), Query Frame = 3
Query:  456 NRVRVVEGRDVLLDAVLRRPAGRALLTVSNHQSVYDDPGLWAAILPFWRTGAAKMR----WALCTDDIYYASSLLTPMLALGRTLPVKRHL--GVDQPLLGKFADKLRQGEWCHIFAEGRIRQPWRFARGEPVLGGFKPGVSRILFRCKEPPLVIPMYHIGMHGVCPEEPCPAYLPAKLQTAYPAGGNRVRVYVGEPVDVWPIVLRWREGFPGQPGLGDMSGEPWGRCCAAGFDVERRCYAEIADALREAVLKLEAKA 1211
            N V+V    + L+DAV  R     L TVSNH S+ D P + AA+ P+  +    ++    W LCTD  ++A+ +    L+ G+ +P+KR    G+ Q  L  F DKL  GEWCH++ EG+I QPWRFA+G+  LG F PGV +++  C+  P+++P+YH GM  + PEE     +PAK  + +P  G  V +YVGEP+D+  +V         QP      G  W    +   D + R +  IA  +R A+  LE +A
Sbjct:  125 NTVKVHHA-ERLIDAVHNRANNTGLFTVSNHASMLD-PAIIAAVYPWEESKEETLKQWPPWTLCTDS-FFANPVARFWLSAGKAMPIKRASPKGLRQKFLKDFKDKLDDGEWCHMYPEGKITQPWRFAKGKSRLGKFLPGVGKLITTCRNRPMLVPIYHKGMDTILPEEEGDPRMPAKPISLFPKFGKHVDIYVGEPIDLSDLV---------QPTNASPEGSEWTEWESESKD-DLRQWLAIAKRVRAAMKDLEEEA 369          
BLAST of mRNA_P-wetherbeei_contig1509.1.1 vs. uniprot
Match: A0A1V9YC99_9STRA (Tafazzin family protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC99_9STRA)

HSP 1 Score: 159 bits (402), Expect = 4.330e-40
Identity = 95/266 (35.71%), Postives = 138/266 (51.88%), Query Frame = 3
Query:  450 VLNRVRVVEGRDVLLDAVLRRPAGRALLTVSNHQSVYDDPGLWAAILPFWRTGAAKMRWALCTDDIYYASSLLTPMLALG-RTLPVKRHLGVDQPLLGKFADKLRQGEWCHIFAEGRIRQPWRFARGEPVL----GGFKPGVSRILFRCKEPPLVIPMYHIGMHGVCPEEPCPAYLPAKLQTAYPAGGNRVRVYVGEPVDVWPIVLRWRE----GFPGQPGLGDMSGEPWGRCCAAGFDVERRCYAEIADALREAVLKLEAKARRD 1220
            +LN V + +  D L   ++ RP  RAL+TV+NH S  DDP L+A +LP+        RW LC+ +  Y    L   L  G +TLP+KR  G+D P+L     K+++GEW H+F EG+I Q  R  + E  L    GG K GV +++ R +E P+VIP+YH+G+  V P+         KL++  P  G RV   VGEP+    + +++ E    G  GQ          W        D ER+ Y+ I   + EA+L LEA+   D
Sbjct:   77 MLNTVSM-KNEDALAQWIIARPRHRALITVTNHSSTVDDPALFACLLPWSCANPRLSRWGLCSQEYCYTKGPLLSALFYGSKTLPIKRGAGIDHPMLMDLFKKVQEGEWVHVFPEGKIVQGGRLGQREDKLQKEIGGLKWGVGKLIARAEETPIVIPIYHLGLDSVMPQN-----ANHKLKSMIPRIGQRVHARVGEPIYFDDLFVKYAEDRVQGIEGQD-------HTW-----VSLDKERQLYSAITRRIEEALLALEAQCYED 324          
BLAST of mRNA_P-wetherbeei_contig1509.1.1 vs. uniprot
Match: A0A067CGR4_SAPPC (Tafazzin family protein n=4 Tax=Saprolegnia TaxID=4769 RepID=A0A067CGR4_SAPPC)

HSP 1 Score: 147 bits (372), Expect = 6.750e-36
Identity = 86/256 (33.59%), Postives = 133/256 (51.95%), Query Frame = 3
Query:  471 VEGRDVLLDAVLRRPAGRALLTVSNHQSVYDDPGLWAAILPFWRTGAAKMRWALCTDDIYYASS-LLTPMLALGRTLPVKRHLGVDQPLLGKFADKLRQGEWCHIFAEGRIRQPWRFA-RGEPV---LGGFKPGVSRILFRCKEPPLVIPMYHIGMHGVCPEEPCPAYLPAKLQTAYPAGGNRVRVYVGEPVDVWPIVLRW-REGFPGQPGLGDMSGEPWGRCCAAGFDVERRCYAEIADALREAVLKLEAKARRD 1220
            ++  D L   +L RP  R+L+TV+NH S  DDP L+A +LP+        RW LC+ +  Y    LL+ +    +TLP+KR  G+D P+L     K++ GEW H+F EG+I Q      R EP+   +GG K GV +++ R +E P+V+P+YH+G+  V P+         KL++  P  GN V V VGEP+    +  ++ ++   G  G      + W          E   Y++I   +  A+L LEA+   D
Sbjct:   86 MQNEDALAKWILARPRHRSLITVTNHSSTVDDPALFARMLPWACANPRVSRWGLCSQEYCYTKGPLLSAVFYGSKTLPIKRGAGIDHPMLHDLFKKVQMGEWVHVFPEGKIVQGGHLGQRDEPMQTNIGGLKWGVGKLIARAEETPIVVPIYHLGLDAVMPQN-----ANHKLKSMIPTTGNHVHVRVGEPIYFDDLFEKYAKDRVQGAEGP-----DSW-----VSKSSEHALYSDITRRIEHALLALEAQCYED 326          
BLAST of mRNA_P-wetherbeei_contig1509.1.1 vs. uniprot
Match: F0WJG4_9STRA (Tafazzin family protein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WJG4_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.030e-35
Identity = 87/256 (33.98%), Postives = 130/256 (50.78%), Query Frame = 3
Query:  450 VLNRVRVVEGRDVLLDAVLRRPAGRALLTVSNHQSVYDDPGLWAAILPFWRTGAAKMRWALCTDDIYYASSLLTPMLALG-RTLPVKRHLGVDQPLLGKFADKLRQGEWCHIFAEGRIRQPWRFARGEPV----LGGFKPGVSRILFRCKEPPLVIPMYHIGMHGVCPEEPCPAYLPAKLQTAYPAGGNRVRVYVGEPVDVWPIVLRWREGFPGQPGLGDMSGEPWGRCCAAGFDVERRCYAEIADALREAVLKLE 1202
            V NR+   EG +VLLD +  RP G+ALLTVSNH +  DDPG++A ILP+     + +RW+LC+ +  Y    L   L    +TLP+KR  GVDQ LL    ++++ G+W HIF EG+I Q       E      +G  K GV +++ R   PP+VIP+YH  M+ + P++        ++    P   N V V VG+P+D   +   + +             E          + E+  Y+ I   + EA+L LE
Sbjct:   75 VFNRLSC-EGNEVLLDKLKNRPKGKALLTVSNHTATVDDPGIFAGILPWSLLTPSNIRWSLCSQEYCYTKGRLASALFYSAKTLPIKRGAGVDQELLHDIFERIQDGQWVHIFPEGKITQDGSLGGREGADRDKIGRLKWGVGKLIARADTPPVVIPIYHFNMNKLMPQDEN-----NEVINVLPRTNNEVFVRVGQPIDFEDLFQEYEKERVKASNASSWDSE----------EKEKVLYSAITRRIEEALLNLE 314          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1509.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEM7_9PHAE4.110e-8555.77Tafazzin family protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8H0_9STRA2.660e-5944.06Tafazzin family protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UUF3_9STRA4.580e-5741.41Tafazzin family protein n=1 Tax=Fibrocapsa japonic... [more]
D8LB90_ECTSI8.610e-5061.97Tafazzin family protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0U611_HEMAN5.070e-4637.22Tafazzin family protein n=1 Tax=Hemiselmis anderse... [more]
A0A6V1V5J4_HETAK1.340e-4036.26Tafazzin family protein n=1 Tax=Heterosigma akashi... [more]
A0A7S4DV10_9EUKA1.820e-4036.82Tafazzin family protein n=3 Tax=Lotharella globosa... [more]
A0A1V9YC99_9STRA4.330e-4035.71Tafazzin family protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A067CGR4_SAPPC6.750e-3633.59Tafazzin family protein n=4 Tax=Saprolegnia TaxID=... [more]
F0WJG4_9STRA1.030e-3533.98Tafazzin family protein n=1 Tax=Albugo laibachii N... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1509contigP-wetherbeei_contig1509:3455..6815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog227086.JGI_V11_78364
PFAMsAcyltransferase
Model size1915
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00037
KEGG koko:K13511
KEGG ReactionR09037
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
Exons6
Evalue6.77e-38
EggNOG OGsKOG2847@1|root,KOG2847@2759|Eukaryota
Descriptioncardiolipin acyl-chain remodeling
Cds size705
COG categoryS
BRITEko00000,ko00001,ko01000,ko01004
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1509.1.1prot_P-wetherbeei_contig1509.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1509 4072..6222 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.1390066-UTR-P-wetherbeei_contig1509:3454..40711683186044.1390066-UTR-P-wetherbeei_contig1509:3454..4071Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1509 3455..4071 +
1683186044.1985154-UTR-P-wetherbeei_contig1509:6222..68151683186044.1985154-UTR-P-wetherbeei_contig1509:6222..6815Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1509 6223..6815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186044.1483889-CDS-P-wetherbeei_contig1509:4071..40791683186044.1483889-CDS-P-wetherbeei_contig1509:4071..4079Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1509 4072..4079 +
1683186044.1560304-CDS-P-wetherbeei_contig1509:4380..45221683186044.1560304-CDS-P-wetherbeei_contig1509:4380..4522Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1509 4381..4522 +
1683186044.1636677-CDS-P-wetherbeei_contig1509:4923..50401683186044.1636677-CDS-P-wetherbeei_contig1509:4923..5040Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1509 4924..5040 +
1683186044.1748412-CDS-P-wetherbeei_contig1509:5269..54671683186044.1748412-CDS-P-wetherbeei_contig1509:5269..5467Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1509 5270..5467 +
1683186044.1827683-CDS-P-wetherbeei_contig1509:5804..59021683186044.1827683-CDS-P-wetherbeei_contig1509:5804..5902Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1509 5805..5902 +
1683186044.1905754-CDS-P-wetherbeei_contig1509:6080..62221683186044.1905754-CDS-P-wetherbeei_contig1509:6080..6222Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1509 6081..6222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1509.1.1

>prot_P-wetherbeei_contig1509.1.1 ID=prot_P-wetherbeei_contig1509.1.1|Name=mRNA_P-wetherbeei_contig1509.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=235bp
MRWALCTDDIYYASSLLTPMLALGRTLPVKRHLGVDQPLLGKFADKLRQG
EWCHIFAEGRIRQPWRFARGEPVLGGFKPGVSRILFRCKEPPLVIPMYHI
GMHGVCPEEPCPAYLPAKLQTAYPAGGNRVRVYVGEPVDVWPIVLRWREG
FPGQPGLGDMSGEPWGRCCAAGFDVERRCYAEIADALREAVLKLEAKARR
DYFRDKGGVAHVEEAAEAAEVVAALELDAASTTV*
back to top

mRNA from alignment at P-wetherbeei_contig1509:3455..6815+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1509.1.1 ID=mRNA_P-wetherbeei_contig1509.1.1|Name=mRNA_P-wetherbeei_contig1509.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3361bp|location=Sequence derived from alignment at P-wetherbeei_contig1509:3455..6815+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAGTCCGAAGAAAAATCGCCGAAGTATAAGAGAGAGATGTGTTTGATT ATGGTTTTGTGGGACAGCCTTGCTTGCCTCTATGCTCGTTTTATCAGCCC TCTGTTCCGTTGACATCTATCCGCTCCTTCTGCTGCTACTGCGGCTGTGC CTGCTGTCATGTCCGGCTTGTAACTTTGCTGCATTCCTGCTTTCGCTCCT GACGCCACCGCCTGCCTGGTGCTGCCTTAGCCTCTTGCAGTTCCCCTCTG AACCGCTAATCTTTCACACCATTTTCGCCGCTGCCATTGTCACAACTGTA GAGCTTATCGTCGGCTGTCCCGTTACCATTTTCGTCGCCCTCTACTGCCG CCGCCGCCGCCGCCCGTGGCGCGCTGCCGTAACCGCCCGTCGCCGCGTGT TGCCATGGTGGCCCACCGGCCGATGCCCTTCCTTCCCACCCCGTTGTAGG TGCTGAACCGCGTGCGCGTGGTGGAAGGTCGCGACGTACTACTGGATGCG GTGCTGCGGCGGCCAGCCGGGCGGGCCCTCCTCACCGTCAGCAACCACCA GAGCGTCTACGACGACCCGGGCCTTTGGGCGGCGATACTGCCCTTCTGGC GGACCGGCGCCGCCAAGATGCGCTGGTGAGTCAGTTTTCCTCTCTTCGGT AATTTTCCCATTTCTCCTGGTGCGACAATTCTGTAGAGCGATTCTGCTGT TTCAACACGCCAGCTTTAAGGGAGCCTTGTTTCGGTCGCGGTCTCTGCCG ACCTTCTCTCACCTCCGCCTTGCGCCCGCCGCTGCTTCTTCAACCGCCGT TGCGGCCACCGCCGGCCGCCGTGCGCTGTGTGCTGCCGCCCGGCCCCACC GCTGACTGCATCTCGGCCCCTGCCGTCTTGGGCCACACACAATTATGACC ATTTACGTTTTTCCCCTCGCAAAAAGGGCGCTGTGCACGGACGACATTTA CTATGCGTCGTCGCTACTGACGCCCATGCTGGCTCTCGGACGGACGCTGC CGGTGAAGCGGCATTTAGGGGTTGACCAGCCGCTGCTTGGGAAGTTCGCC GACAAACTCCGGCAAGGGGTGAGTTTGATTGGCCAGTTTCGTTGGTCGGC CTGACGGCCAGTGGGTTTCCTTGTAGGAACTGCGGCCTCTTCTTTTCTCT TTTTTGCGATTAATCCATCTTTTCTTTCTCGGGCACTTGTGATTTTAATT GTTGCCGGCTCCTTTGACGATGAACGGAAAAGGGCGCGGGGTGGCGTTCG CGCACTTGGGCAATCCGGCCACTGAAGGAGCGGATCCGGGTGCAAATGCG TCGAAGGCATTTGAGATGCCTTGCCTGTTTGGAAGGGAAGAACGCAGCAC ATTGTCTCGCTCGCTTTCCGCATGGGCCCACTGCATTCGATTGGGTCGGG TTTCGGCAGCGGTCACATTGTTTTTACGAAACCGGCTGCCTCGTTTTCCG CTCCTTGTGGACCAAACAGGAATGGTGCCACATCTTCGCCGAAGGACGCA TTCGGCAGCCGTGGCGCTTCGCCCGCGGCGAGCCGGTTCTTGGAGGTTTC AAGCCCGGCGTCAGTAGGATACTTTTCCGCTGCAAGGTGTGCTGTCTCCC TCCCGGCTACTTGTCTTTCGCTTGATTTTCTTCCAAACCAAGATTTGCTG CTGCTGCTTGCTGCGTCCACGCCGTTGCCGCTGTGCCGCCGCCTCCGAAA GTGGGTGCCGTCGACTCGCACGCCGGCTCTCTTATTCCTTCTGTGGCTGC CCCAATGCTCATCGTCACGCGCCGTTGCCGTGCTTCGTATCGCTCCTCTC CGCACCACTCCGCAGGAGCCGCCGCTGGTGATCCCGATGTACCACATCGG TATGCACGGTGTGTGCCCCGAGGAGCCGTGCCCGGCGTACCTGCCCGCCA AGCTGCAGACGGCGTACCCCGCCGGCGGTAACCGAGTGCGCGTCTATGTA GGGGAGCCCGTCGACGTGTGGCCCATCGTGTTGCGCTGGCGGGAGGGTTT CCCGGGCCAACCGGTGAGCGAGAGACGTAGACGGCAGCGGCGACAGCAGG CTTTGGGGACAGCGTTATACGGTGGCGGTGTCGGCTTGGAGCAGTGACGG CCTAACCGATGGGCTTGAGCATCGAGTACAACATCGGCAAAGGAATGGGC CGAATGGCGAGCGCGGGGCGATGGACGCCTATGCCGGCAAGGCTCGCGCT CTGCTTTGTTTGATATGCGTCAATCCGGAGACTGACGGAGGTTGTGCTTC TCGTTTAGGTCGATCGTTCCGACTCACACCGTCCAACTCACTCCGCTGCC GGCGCCACCGCTGTTGATGCTATCGCCATCCTCTTCCTCCCCCTCTTCAG GGCCTGGGGGACATGAGCGGGGAGCCTTGGGGACGGTGCTGCGCGGCGGG GTTCGACGTGGAGCGGCGCTGCTACGCCGAAATCGCCGACGCCCTCAGGT GAGGAAAAAAGGAGTGAAAGAAATGCAAGACAAAGGAGGAGAGAGAGGAG GCCAGCCGGACGGGCCATACACTGTCGTGACCGTCTCTCTGTCCCACTTC ACATCTAACATGCTTCTGCTGCGTCGATGGGTTGCACTGGTCGTTTCGAA TCGGTGCTCGCCGGTGTGTTTGGCAGGGAGGCGGTGCTCAAGCTGGAGGC AAAGGCCCGTCGTGACTACTTCAGAGATAAGGGTGGTGTCGCCCACGTGG AGGAGGCGGCCGAGGCGGCCGAGGTGGTGGCGGCGCTGGAGTTAGATGCT GCTTCAACGACAGTGTGAGCTGCAGAAGCGGCGGCGGGCGGCGACTTCTG TGAGGGCAGCAGCAGCGACGGAGTCGACAATGGCGGCGGCAGGTGCTGGA GGAGTTGAAGGGTCCGACGTTGCCGTCGCCATTACCGTCGCCATTACCGT CGCCGCGACGGCAACAATCGTGGCGAGCGAGTAATAACTGATGCTCCTAA CCTCGCTTACGGTTTAGACGGAGAGGGTTTGGGATTGATGAGGCGAGGCA ACGGCGCAGAACGGCGTCTGAAGAGCAGGGGCATTTGCCTTGGCAAGATT GAAAGCAAGAGGCAAGAATATAGAGGCGATGACCTAGAAGAAGAGCGGAT TTTCCACGGTGAGTCCTTTCGGCCTCAAGAAGAGTGTTATGGCTGTTTCA TCGTCTAGTGACGTGGCTTCAGCTGCGGCATGCATGCGCTGCCAGATGCG GCGCGCATCTTAGATTGCATGGCGCGGTCCAGCTAGATTGACTCCAGGTC TGGTGTTTTTCGGAGTGGATGGCGGCAGCTGGAAGCCCGTCGGGGCGGGG GGTTGGCCAGCCCCATTCCACCCAATTGTCGAAATTTAAAAGTAACCGAA AATTCGCACCA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1509:3455..6815+

>mRNA_P-wetherbeei_contig1509.1.1 ID=mRNA_P-wetherbeei_contig1509.1.1|Name=mRNA_P-wetherbeei_contig1509.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=705bp|location=Sequence derived from alignment at P-wetherbeei_contig1509:3455..6815+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCTGGGCGCTGTGCACGGACGACATTTACTATGCGTCGTCGCTACT
GACGCCCATGCTGGCTCTCGGACGGACGCTGCCGGTGAAGCGGCATTTAG
GGGTTGACCAGCCGCTGCTTGGGAAGTTCGCCGACAAACTCCGGCAAGGG
GAATGGTGCCACATCTTCGCCGAAGGACGCATTCGGCAGCCGTGGCGCTT
CGCCCGCGGCGAGCCGGTTCTTGGAGGTTTCAAGCCCGGCGTCAGTAGGA
TACTTTTCCGCTGCAAGGAGCCGCCGCTGGTGATCCCGATGTACCACATC
GGTATGCACGGTGTGTGCCCCGAGGAGCCGTGCCCGGCGTACCTGCCCGC
CAAGCTGCAGACGGCGTACCCCGCCGGCGGTAACCGAGTGCGCGTCTATG
TAGGGGAGCCCGTCGACGTGTGGCCCATCGTGTTGCGCTGGCGGGAGGGT
TTCCCGGGCCAACCGGGCCTGGGGGACATGAGCGGGGAGCCTTGGGGACG
GTGCTGCGCGGCGGGGTTCGACGTGGAGCGGCGCTGCTACGCCGAAATCG
CCGACGCCCTCAGGGAGGCGGTGCTCAAGCTGGAGGCAAAGGCCCGTCGT
GACTACTTCAGAGATAAGGGTGGTGTCGCCCACGTGGAGGAGGCGGCCGA
GGCGGCCGAGGTGGTGGCGGCGCTGGAGTTAGATGCTGCTTCAACGACAG
TGTGA
back to top