mRNA_P-wetherbeei_contig1507.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1507.2.1
Unique NamemRNA_P-wetherbeei_contig1507.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1507.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1507contigP-wetherbeei_contig1507:2162..3186 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size705
Hectar predicted targeting categoryother localisation
Exons3
Cds size702
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186043.5020397-CDS-P-wetherbeei_contig1507:2161..24561683186043.5020397-CDS-P-wetherbeei_contig1507:2161..2456Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1507 2162..2456 +
1683186043.515096-CDS-P-wetherbeei_contig1507:2587..28921683186043.515096-CDS-P-wetherbeei_contig1507:2587..2892Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1507 2588..2892 +
1683186043.5259764-CDS-P-wetherbeei_contig1507:3082..31841683186043.5259764-CDS-P-wetherbeei_contig1507:3082..3184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1507 3083..3184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1507.2.1prot_P-wetherbeei_contig1507.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1507 2162..3184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1507.2.1

>prot_P-wetherbeei_contig1507.2.1 ID=prot_P-wetherbeei_contig1507.2.1|Name=mRNA_P-wetherbeei_contig1507.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=234bp
VGNFLIEAGIDFRWTHPKAGTARALCTHGGKPEPPRGPSRRRSSTGGAGS
SSAGETSDGGAFSAGESSAGEEAGALRTTTGSKKCDCPFLVRLSRTKDGV
TRVAKVDLRHNAECVELSVAKARKRHRMHLLAERRGQGPMGGSVYEIHAE
QILGDVEKMVRDYASQGGLHVATIRTLVALNFPGRPHGEKCLLTNAAAKK
VNNIVQAVRKPANDLQSDANALITYLKQLRGCYI
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mRNA from alignment at P-wetherbeei_contig1507:2162..3186+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1507.2.1 ID=mRNA_P-wetherbeei_contig1507.2.1|Name=mRNA_P-wetherbeei_contig1507.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1025bp|location=Sequence derived from alignment at P-wetherbeei_contig1507:2162..3186+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGGCAACTTCCTTATCGAGGCCGGCATTGACTTTCGCTGGACCCATCC
AAAGGCCGGCACAGCCAGGGCCCTGTGCACGCATGGTGGCAAGCCTGAGC
CTCCCAGAGGCCCTTCTCGCCGACGAAGCTCGACGGGCGGCGCCGGCAGC
AGCTCTGCGGGGGAGACATCAGACGGAGGGGCATTTTCGGCAGGAGAGTC
ATCAGCGGGAGAAGAGGCAGGGGCGCTCCGCACGACCACCGGCTCGAAGA
AGTGTGACTGCCCGTTCCTTGTCAGACTGTCACGCACCAAAGATGGTAAG
TGGCGCATCCATGGCTGCCGGTAGAATCCAGTATGATGGGCTGACGGCCA
CTACGGCAGTTAGTTTTCAACCACGCTTTTCCTTTTTCTCCCCTTTTCGT
ATTGTCTCTTCACTGTACGTTTACAGGAGTGACGCGAGTGGCAAAGGTGG
ACTTGCGACACAACGCGGAATGCGTGGAGTTGTCCGTGGCGAAGGCGCGG
AAGCGGCACAGGATGCACCTCTTGGCTGAGCGGCGGGGGCAGGGTCCGAT
GGGCGGCAGCGTTTACGAGATCCACGCGGAGCAGATCTTGGGCGACGTCG
AGAAGATGGTCAGGGATTACGCCAGCCAGGGGGGGCTGCATGTGGCCACC
ATCCGCACCCTTGTGGCGCTCAACTTTCCTGGCCGACCCCATGGGGAGAA
GTGTCTGCTCACCAACGCTGCGGCCAAGAAGGTGCAGTTTCTTACTTTTC
TGTGCCTACCGAGTGTATTTGTCTTATTTTGCTGTTTCGATCTCTGCTCT
CTCCTCCGTACTTTCCTTTCTAGGGCTGTTGCTTTGGTCCTGGTGTCTGC
CTTTGCGTTCTGCTTATTTAGAAATTTGCTTACTTAGAAATTTCACTGCT
CGCCGATTCTCCGTATTGAAGGTGAACAACATCGTCCAGGCAGTGCGGAA
ACCGGCGAATGACCTGCAGAGCGACGCGAACGCTCTCATCACCTACCTCA
AGCAGCTACGCGGCTGCTACATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1507:2162..3186+

>mRNA_P-wetherbeei_contig1507.2.1 ID=mRNA_P-wetherbeei_contig1507.2.1|Name=mRNA_P-wetherbeei_contig1507.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=702bp|location=Sequence derived from alignment at P-wetherbeei_contig1507:2162..3186+ (Phaeothamnion wetherbeei SAG_119_79)
GTCGGCAACTTCCTTATCGAGGCCGGCATTGACTTTCGCTGGACCCATCC
AAAGGCCGGCACAGCCAGGGCCCTGTGCACGCATGGTGGCAAGCCTGAGC
CTCCCAGAGGCCCTTCTCGCCGACGAAGCTCGACGGGCGGCGCCGGCAGC
AGCTCTGCGGGGGAGACATCAGACGGAGGGGCATTTTCGGCAGGAGAGTC
ATCAGCGGGAGAAGAGGCAGGGGCGCTCCGCACGACCACCGGCTCGAAGA
AGTGTGACTGCCCGTTCCTTGTCAGACTGTCACGCACCAAAGATGGAGTG
ACGCGAGTGGCAAAGGTGGACTTGCGACACAACGCGGAATGCGTGGAGTT
GTCCGTGGCGAAGGCGCGGAAGCGGCACAGGATGCACCTCTTGGCTGAGC
GGCGGGGGCAGGGTCCGATGGGCGGCAGCGTTTACGAGATCCACGCGGAG
CAGATCTTGGGCGACGTCGAGAAGATGGTCAGGGATTACGCCAGCCAGGG
GGGGCTGCATGTGGCCACCATCCGCACCCTTGTGGCGCTCAACTTTCCTG
GCCGACCCCATGGGGAGAAGTGTCTGCTCACCAACGCTGCGGCCAAGAAG
GTGAACAACATCGTCCAGGCAGTGCGGAAACCGGCGAATGACCTGCAGAG
CGACGCGAACGCTCTCATCACCTACCTCAAGCAGCTACGCGGCTGCTACA
TT
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