mRNA_P-wetherbeei_contig15065.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig15065.1.1
Unique NamemRNA_P-wetherbeei_contig15065.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig15065.1.1 vs. uniprot
Match: A0A7S0NY69_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NY69_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 1.380e-15
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 3
Query:   48 FGMNAGIQDAFNLAWRLALVHRGAAPASLLESYECERRPVAVRNAALRVHNYWRRGRMAKSLGL 239
            FGMN G+QD  N+ W+LA VHRG A   LL SY+ ERRP+A+ NA L VHNY R  R+A++LGL
Sbjct:  130 FGMNTGLQDVHNICWKLAAVHRGQAGTRLLRSYDAERRPIALANARLAVHNYVRGLRVAEALGL 193          
BLAST of mRNA_P-wetherbeei_contig15065.1.1 vs. uniprot
Match: A0A250XAW1_9CHLO (FAD_binding_3 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XAW1_9CHLO)

HSP 1 Score: 80.9 bits (198), Expect = 2.510e-15
Identity = 43/86 (50.00%), Postives = 54/86 (62.79%), Query Frame = 3
Query:   48 FGMNAGIQDAFNLAWRLALVHRGAAPASLLESYECERRPVAVRNAALRVHNYWRRGRMAKSLGLDPRGPDILRQVRAVRKGRSKWG 305
            FGMN GIQDA NLAW+LA V +G+A   LL SYE ERRPVA+ N AL V N+    R+ + LGLDP+   +  Q+ +       WG
Sbjct:  380 FGMNTGIQDAHNLAWKLAAVLKGSAGTRLLHSYEVERRPVALANTALSVANWEEAVRVPQVLGLDPKAAKLANQIVSSAPLSLTWG 465          
BLAST of mRNA_P-wetherbeei_contig15065.1.1 vs. uniprot
Match: A0A061QM67_9CHLO (Polyketide hydroxylase-like n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QM67_9CHLO)

HSP 1 Score: 80.5 bits (197), Expect = 3.360e-15
Identity = 43/75 (57.33%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   48 FGMNAGIQDAFNLAWRLALVHRGAAPASLLESYECERRPVAVRNAALRVHNYWRRGRMAKSLGLDPRGPDILRQV 272
            FGMN GIQDA NLAW+LA VH GAA   LLE+Y  ERRPVA  N  L V NY    R+ ++LGLDPR  ++   V
Sbjct:  304 FGMNTGIQDAHNLAWKLAAVHTGAASEELLETYGGERRPVAEANTLLSVSNYEDALRVPRALGLDPRAANLASAV 378          
BLAST of mRNA_P-wetherbeei_contig15065.1.1 vs. uniprot
Match: A0A5N6R4K3_9ROSI (FAD_binding_3 domain-containing protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6R4K3_9ROSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.130e-14
Identity = 38/66 (57.58%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   48 FGMNAGIQDAFNLAWRLALVHRGAAPASLLESYECERRPVAVRNAALRVHNYWRRGRMAKSLGLDP 245
            FGMN GIQDA NLAW++A + +G AP+SLLE+YE ER+P+A+ N AL V NY     +  +LGLDP
Sbjct:  385 FGMNTGIQDAHNLAWKIASIVKGIAPSSLLETYETERKPIAIFNTALSVQNYRAAMAVPAALGLDP 450          
BLAST of mRNA_P-wetherbeei_contig15065.1.1 vs. uniprot
Match: A0A5J5AHP6_9ASTE (FAD_binding_3 domain-containing protein n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5AHP6_9ASTE)

HSP 1 Score: 79.0 bits (193), Expect = 1.170e-14
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 3
Query:   48 FGMNAGIQDAFNLAWRLALVHRGAAPASLLESYECERRPVAVRNAALRVHNYWRRGRMAKSLGLDPRGPDILRQV 272
            FGMN GIQDA NLAW+LA V +G AP S+L +YE ERRP+A+ N AL V N+     +  SLGLDP   + + QV
Sbjct:  380 FGMNTGIQDAHNLAWKLASVVKGIAPYSILRTYEMERRPIAIFNTALSVQNFRAAMEVPASLGLDPSVANSVHQV 454          
BLAST of mRNA_P-wetherbeei_contig15065.1.1 vs. uniprot
Match: A0A383VFI6_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VFI6_TETOB)

HSP 1 Score: 79.0 bits (193), Expect = 1.210e-14
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 3
Query:   48 FGMNAGIQDAFNLAWRLALVHRGAAPASLLESYECERRPVAVRNAALRVHNYWRRGRMAKSLGLDPRGPDILRQVRAVR---KGRSKWGFEECV 320
            FGMN GIQDA NLAW+LA    G A +SLL +Y+ ERRP+A  NAAL + N+    R+ ++LGLDP+   ++ Q+ +     +G  +W  E  +
Sbjct:  423 FGMNTGIQDAHNLAWKLAAALHGKANSSLLSTYQSERRPIAQANAALSISNWHEAVRVPQALGLDPQAAGLVSQLASAAPLPQGIGRWLLESAL 516          
BLAST of mRNA_P-wetherbeei_contig15065.1.1 vs. uniprot
Match: A0A7S0PS10_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0PS10_9CHLO)

HSP 1 Score: 78.6 bits (192), Expect = 1.590e-14
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 3
Query:   48 FGMNAGIQDAFNLAWRLALVHRGAAPASLLESYECERRPVAVRNAALRVHNYWRRGRMAKSLGLDPRGPDILR 266
            FGMN GIQDA NLAW+LA V RG +   LL +YE ERRPVA+RN AL V N+    ++  ++GL P   D+LR
Sbjct:  393 FGMNTGIQDAHNLAWKLAAVTRGISSPELLRTYETERRPVALRNTALSVENFKGVLKIPNAIGLPPMAADVLR 465          
BLAST of mRNA_P-wetherbeei_contig15065.1.1 vs. uniprot
Match: D7FML8_ECTSI (Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FML8_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.220e-14
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = 3
Query:   48 FGMNAGIQDAFNLAWRLALVHRGAAPASLLESYECERRPVAVRNAALRVHNYWRRGRMAKSLGLDPR---GPDILRQV 272
            FG+N G+QDA NLAW+LA VH G A   LL +YE ERRPVA+RNA L V N  R  R+ ++LG+DP     P+++ Q+
Sbjct:  422 FGLNTGVQDAHNLAWKLAAVHHGLASPDLLLTYEQERRPVAMRNATLSVRNLKRSLRVLETLGVDPSLGASPNLMDQL 499          
BLAST of mRNA_P-wetherbeei_contig15065.1.1 vs. uniprot
Match: A0A7J6VIM3_THATH (2,4-dichlorophenol 6-monooxygenase-like (Fragment) n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VIM3_THATH)

HSP 1 Score: 75.9 bits (185), Expect = 2.470e-14
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 3
Query:   48 FGMNAGIQDAFNLAWRLALVHRGAAPASLLESYECERRPVAVRNAALRVHNYWRRGRMAKSLGLDP 245
            FGMN GIQDA NLAW++A + +G AP+S+L++YE ERRP+A+ N AL V N+     +  +LGLDP
Sbjct:   32 FGMNTGIQDAHNLAWKIAFLVKGIAPSSILQTYETERRPIALFNTALSVQNFKAAMSVPAALGLDP 97          
BLAST of mRNA_P-wetherbeei_contig15065.1.1 vs. uniprot
Match: A0A373DJ43_9MICO (FAD_binding_3 domain-containing protein n=1 Tax=Leucobacter sp. wl10 TaxID=2304677 RepID=A0A373DJ43_9MICO)

HSP 1 Score: 77.8 bits (190), Expect = 2.940e-14
Identity = 40/69 (57.97%), Postives = 47/69 (68.12%), Query Frame = 3
Query:   39 TARFGMNAGIQDAFNLAWRLALVHRGAAPASLLESYECERRPVAVRNAALRVHNYWRRGRMAKSLGLDP 245
            T   G+N G+QDA NLAW+LA V RG APASLL+SYE ERRPVA  N A  + N  R G +  +LGL P
Sbjct:  344 TGGLGLNGGVQDAHNLAWKLAAVLRGEAPASLLDSYEWERRPVAAHNTAHSLENAGRHGPIGAALGLGP 412          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig15065.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0NY69_9EUKA1.380e-1559.38Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A250XAW1_9CHLO2.510e-1550.00FAD_binding_3 domain-containing protein n=1 Tax=Ch... [more]
A0A061QM67_9CHLO3.360e-1557.33Polyketide hydroxylase-like n=2 Tax=Tetraselmis sp... [more]
A0A5N6R4K3_9ROSI1.130e-1457.58FAD_binding_3 domain-containing protein n=1 Tax=Ca... [more]
A0A5J5AHP6_9ASTE1.170e-1454.67FAD_binding_3 domain-containing protein n=2 Tax=Ny... [more]
A0A383VFI6_TETOB1.210e-1443.62Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7S0PS10_9CHLO1.590e-1454.79Hypothetical protein n=1 Tax=Ostreococcus mediterr... [more]
D7FML8_ECTSI2.220e-1452.56Monooxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A7J6VIM3_THATH2.470e-1454.552,4-dichlorophenol 6-monooxygenase-like (Fragment)... [more]
A0A373DJ43_9MICO2.940e-1457.97FAD_binding_3 domain-containing protein n=1 Tax=Le... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig15065contigP-wetherbeei_contig15065:715..1461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FML8
PFAMsFAD_binding_3
Model size370
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.92e-14
EggNOG OGsCOG0654@1|root,KOG3855@2759|Eukaryota
DescriptionFAD binding
Cds size297
COG categoryCH
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186043.3618095-UTR-P-wetherbeei_contig15065:714..7671683186043.3618095-UTR-P-wetherbeei_contig15065:714..767Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15065 715..767 +
1683186043.4100888-UTR-P-wetherbeei_contig15065:1441..14611683186043.4100888-UTR-P-wetherbeei_contig15065:1441..1461Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig15065 1442..1461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186043.3732047-CDS-P-wetherbeei_contig15065:767..7851683186043.3732047-CDS-P-wetherbeei_contig15065:767..785Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15065 768..785 +
1683186043.384545-CDS-P-wetherbeei_contig15065:927..10091683186043.384545-CDS-P-wetherbeei_contig15065:927..1009Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15065 928..1009 +
1683186043.4000576-CDS-P-wetherbeei_contig15065:1244..14411683186043.4000576-CDS-P-wetherbeei_contig15065:1244..1441Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig15065 1245..1441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig15065.1.1prot_P-wetherbeei_contig15065.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig15065 768..1441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig15065.1.1

>prot_P-wetherbeei_contig15065.1.1 ID=prot_P-wetherbeei_contig15065.1.1|Name=mRNA_P-wetherbeei_contig15065.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MNAGIQDAFNLAWRLALVHRGAAPASLLESYECERRPVAVRNAALRVHNY
WRRGRMAKSLGLDPRGPDILRQVRAVRKGRSKWGFEECVIVRFDMYYL*
back to top

mRNA from alignment at P-wetherbeei_contig15065:715..1461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig15065.1.1 ID=mRNA_P-wetherbeei_contig15065.1.1|Name=mRNA_P-wetherbeei_contig15065.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=747bp|location=Sequence derived from alignment at P-wetherbeei_contig15065:715..1461+ (Phaeothamnion wetherbeei SAG_119_79)
AATTGACGTCGAAGCAAATCGGAGGACTACGATTGACGACAGCGCGCTTC GGCATGAACGCGGGAATCCAGGTGCGTTGGCAGTGTCGGATGTGCATTTG CAGCTTTTATGCATCCTCTCTGCCATCCCAGGTTTTGCCGATCGCCCTCC AACTCAAACATCTCTCCTTCTCCAAACTCTTTTTGTCGGCCTGTTTCCGG TTGATCTTGACAGGACGCGTTCAACTTGGCGTGGCGGCTCGCGCTCGTCC ACCGGGGGGCGGCGCCGGCGTCGCTTCTAGAAAGCTACGAGTGCGGTAAG CGGCTGCTGCTGCCTCCTCCCTCATCGATTTCTCGATTGTAAACGTTTGA CCGATAAACGTGTTGTCCTTGGCGCCGTACGCAGTCAAAAGTGTTGCATT GCCGTTTGTTTCAGGGGACAGCGGCGTAGCTGCAATCAACGCTTTGACTG TCGACTGCTGAGTAGCATTCTTCGCCCACCACTAACCGACCCTACCTTTG CCCGCCCGCCGTTGTTGTACAAAACGGCAGAGCGTCGTCCGGTGGCAGTG CGCAATGCGGCGCTGCGCGTGCACAACTATTGGAGGAGAGGCCGCATGGC CAAGTCGCTCGGACTGGACCCGCGTGGCCCCGACATCCTTCGGCAGGTGA GAGCAGTAAGGAAGGGACGGAGCAAATGGGGTTTTGAAGAATGTGTGATT GTTAGATTTGATATGTATTATCTCTAAAGAAGGGTGCGTAATGCGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig15065:715..1461+

>mRNA_P-wetherbeei_contig15065.1.1 ID=mRNA_P-wetherbeei_contig15065.1.1|Name=mRNA_P-wetherbeei_contig15065.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig15065:715..1461+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAACGCGGGAATCCAGGACGCGTTCAACTTGGCGTGGCGGCTCGCGCT
CGTCCACCGGGGGGCGGCGCCGGCGTCGCTTCTAGAAAGCTACGAGTGCG
AGCGTCGTCCGGTGGCAGTGCGCAATGCGGCGCTGCGCGTGCACAACTAT
TGGAGGAGAGGCCGCATGGCCAAGTCGCTCGGACTGGACCCGCGTGGCCC
CGACATCCTTCGGCAGGTGAGAGCAGTAAGGAAGGGACGGAGCAAATGGG
GTTTTGAAGAATGTGTGATTGTTAGATTTGATATGTATTATCTCTAA
back to top