mRNA_P-wetherbeei_contig1501.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1501.1.1
Unique NamemRNA_P-wetherbeei_contig1501.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1501.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1501contigP-wetherbeei_contig1501:3127..4094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size427
Hectar predicted targeting categoryother localisation
Exons3
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.0995145-CDS-P-wetherbeei_contig1501:3126..33221683186041.0995145-CDS-P-wetherbeei_contig1501:3126..3322Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1501 3127..3322 -
1683186041.1079926-CDS-P-wetherbeei_contig1501:3722..37841683186041.1079926-CDS-P-wetherbeei_contig1501:3722..3784Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1501 3723..3784 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186041.1154504-UTR-P-wetherbeei_contig1501:3784..37861683186041.1154504-UTR-P-wetherbeei_contig1501:3784..3786Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1501 3785..3786 -
1683186041.1233332-UTR-P-wetherbeei_contig1501:3927..40941683186041.1233332-UTR-P-wetherbeei_contig1501:3927..4094Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1501 3928..4094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1501.1.1prot_P-wetherbeei_contig1501.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1501 3127..3784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1501.1.1

>prot_P-wetherbeei_contig1501.1.1 ID=prot_P-wetherbeei_contig1501.1.1|Name=mRNA_P-wetherbeei_contig1501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MDLLKSFGRKSSRALNDSDSDSRGGSGGGDGGNGTGATGGGSPAKAAAAA
GAAKPSPRRQASLRGSVARSPPKAGSPAKADVSGAN
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mRNA from alignment at P-wetherbeei_contig1501:3127..4094-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1501.1.1 ID=mRNA_P-wetherbeei_contig1501.1.1|Name=mRNA_P-wetherbeei_contig1501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=968bp|location=Sequence derived from alignment at P-wetherbeei_contig1501:3127..4094- (Phaeothamnion wetherbeei SAG_119_79)
TTTTGAGGTTGGTGTAGGAATCCAGCGGTAAAAATCACAGAGGGCTTGAA
ATTGGTGAAATCTGTACTATTGCCGCGCCTGAGCGCAGATCTGTTTATTT
TGCAAGGCCTTGAAAGCGCCTTTTCCCTCTCTCTTGGGGCGCAAGCGTCG
AGCCTCTACTCTTTGAGGTATGTGTCCCACCCTCGCTCAGCTCACAAGTA
TCTCTGCGCTTTGACCTCCTCCGGAAGCATCGTGAGGGTTCCCCTCTCGT
TGATCATAACGTCTTCTCCGCCGCATATAACCTTTTGGCGAACATATTGT
GGTTGCAGCGATGGATCTCCTGAAGAGCTTCGGGCGTAAGAGCAGCCGGG
CGCTGAATGACTCCGACAGCGAGTGAGGCACCCCGCGGGTTTCCGCTTTT
ATTACCCATTGATTCTTTAAGATTTCTCGGCCGCTTCGGCTGCCTTGAGC
TGCAGTACTGCCACGTTTCGGAACCACATGGCCGCCAGGAGTCCGCTTGC
GTTTTCCGAATCAAACATTCCACGAAGTAAATGCATTGCAGGATTTTTTG
GGTCGCCAATGCTCTGCAGCCTGTCATTGACGCCGGCGCCGGCCGCATTT
CAAAGCGATCGGACCACTTTGATCGTTCTCACTTTCCAAGGCATCTTCTG
ACCATTTTTGCACCGCGGTGTTCCTTGAAAATAACCGCTACATGAAAAAC
CAATGCCGAATGTTTCGCAACTCCTCTACTGCTGCGCATCTCTCTTGCTG
CCCACCCGGCGCACGGTTCCAGCTCTCGCGGCGGCAGCGGCGGCGGCGAC
GGCGGCAACGGCACCGGCGCCACCGGCGGCGGTTCCCCCGCGAAGGCGGC
GGCTGCCGCGGGCGCGGCAAAGCCCAGCCCCCGCCGGCAGGCGTCGTTAC
GCGGCAGCGTCGCCAGATCGCCGCCAAAGGCCGGCTCGCCGGCAAAGGCC
GATGTCAGCGGCGCCAAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1501:3127..4094-

>mRNA_P-wetherbeei_contig1501.1.1 ID=mRNA_P-wetherbeei_contig1501.1.1|Name=mRNA_P-wetherbeei_contig1501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig1501:3127..4094- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATCTCCTGAAGAGCTTCGGGCGTAAGAGCAGCCGGGCGCTGAATGA
CTCCGACAGCGACTCTCGCGGCGGCAGCGGCGGCGGCGACGGCGGCAACG
GCACCGGCGCCACCGGCGGCGGTTCCCCCGCGAAGGCGGCGGCTGCCGCG
GGCGCGGCAAAGCCCAGCCCCCGCCGGCAGGCGTCGTTACGCGGCAGCGT
CGCCAGATCGCCGCCAAAGGCCGGCTCGCCGGCAAAGGCCGATGTCAGCG
GCGCCAAT
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