mRNA_P-wetherbeei_contig150.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig150.4.1
Unique NamemRNA_P-wetherbeei_contig150.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig150.4.1 vs. uniprot
Match: A0A5J5BJZ0_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J5BJZ0_9ASTE)

HSP 1 Score: 119 bits (299), Expect = 9.340e-30
Identity = 68/144 (47.22%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  321 SSDEEKLHNVADEFYDDEADNADEVWAAENMRPKSKGQKEVKSDADLSCPACFTLVCTECQRHEGYKNQFRALFVMNVTVQGEEMV----LKEDAGVE--------------ERLRGVRCSECGTDLGVIDEEEVYHFFNVIPT 698
            S D+E  ++V  EFYD E D  DE+W    ++ K KG+    SDA LSCPACFT +C ECQRHE Y  Q+RA+FVMN  ++  ++     LK   G                E LR V CS C T++GVIDEEEVYHFFNV+P+
Sbjct:   22 SDDDEIDYSVKPEFYDSELDEKDELW----VQNKRKGRD---SDASLSCPACFTTLCLECQRHEKYVTQYRAVFVMNCKIKSGQLSKQGSLKRKRGKRRKESGESEADPLSGETLRPVSCSVCSTEVGVIDEEEVYHFFNVLPS 158          
BLAST of mRNA_P-wetherbeei_contig150.4.1 vs. uniprot
Match: A0A0K9Q1T1_ZOSMR (E2F-associated phosphoprotein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9Q1T1_ZOSMR)

HSP 1 Score: 117 bits (294), Expect = 1.980e-29
Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 3
Query:  321 SSDEEKLHNVADEFYDDEADNADEVWAAENMRPKSKGQKEVKSDADLSCPACFTLVCTECQRHEGYKNQFRALFVMNVTVQGEEMVLKEDAGVEERLRGVRCSECGTDLGVIDEEEVYHFFNVIPT 698
            SSD+E  ++V  +FYD   D+ DEVW         K +K+V +DA LSCPAC  +VC +CQRHE Y  Q+RA+FV N  ++  E+   E+A  EE L  V C+ C T LGV D++EVYHFF+V+P+
Sbjct:    8 SSDDEIDYSVKPDFYDSNLDDRDEVWV-------HKRRKDVTTDAVLSCPACLNMVCIDCQRHEKYVTQYRAMFVFNCKIKEIEVKHAENAKPEELLWPVCCAVCDTKLGVFDQDEVYHFFDVLPS 126          
BLAST of mRNA_P-wetherbeei_contig150.4.1 vs. uniprot
Match: A0A199VCB7_ANACO (E2F-associated phosphoprotein n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A199VCB7_ANACO)

HSP 1 Score: 118 bits (296), Expect = 2.450e-29
Identity = 66/139 (47.48%), Postives = 86/139 (61.87%), Query Frame = 3
Query:  321 SSDEEKLHNVADEFYDDEADNADEVWAAENMRPKSKGQKEVKSDADLSCPACFTLVCTECQRHEGYKNQFRALFVMNVTVQ-----------GEEMVLKEDAGV--EERLRGVRCSECGTDLGVIDEEEVYHFFNVIPT 698
            SSD+E  ++V  EFYD   D+ DE WA +  + +S       SDA LSCPACFT +C +CQRHE Y  Q+RA+FV N  V+           G++   + D+G   EE  R V CS C T++GV+DEEEVYHFFNVIP+
Sbjct:   25 SSDDEIDYSVKPEFYDPNIDDIDEKWAHKQRKGRS-------SDAILSCPACFTTLCLDCQRHEKYVTQYRAMFVRNCKVRTDQILRPAKRKGKKSKARSDSGKPEEEVFRPVCCSVCSTEVGVLDEEEVYHFFNVIPS 156          
BLAST of mRNA_P-wetherbeei_contig150.4.1 vs. uniprot
Match: A0A834YN18_9MAGN (Uncharacterized protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834YN18_9MAGN)

HSP 1 Score: 118 bits (295), Expect = 6.200e-29
Identity = 67/148 (45.27%), Postives = 90/148 (60.81%), Query Frame = 3
Query:  309 AKANSSDEEKLHNVADEFYDDEADNADEVWAAENMRPKSKGQKEVKSDADLSCPACFTLVCTECQRHEGYKNQFRALFVMNVTVQGEEMVLKE----------------DAGVE--ERLRGVRCSECGTDLGVIDEEEVYHFFNVIPT 698
            A A S D+E  +++  EFYD + D  DE W    ++ KSKG     SDA LSCPACFT +C ECQRHE Y  Q+RA+FV+N  V+ E+++ +                 +AG E  E  R V CS C T++G+IDE+EVYHFFNV+P+
Sbjct:   37 APAFSDDDEIDYSIKPEFYDSDLDEKDESW----VQKKSKGHT---SDAVLSCPACFTSLCLECQRHEKYVTQYRAIFVVNCKVKSEKVLRQRNQKPRKGKRGRDSGESEAGPEGGETFRPVCCSVCSTEVGIIDEDEVYHFFNVLPS 177          
BLAST of mRNA_P-wetherbeei_contig150.4.1 vs. uniprot
Match: A0A5J9UZK4_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UZK4_9POAL)

HSP 1 Score: 117 bits (294), Expect = 6.610e-29
Identity = 65/147 (44.22%), Postives = 88/147 (59.86%), Query Frame = 3
Query:  321 SSDEEKLHNVADEFYDDEADNADEVWAAENMRPKSKGQKEVKSDADLSCPACFTLVCTECQRHEGYKNQFRALFVMNVTVQGEEMVLKEDAGVEERLRG---------------------VRCSECGTDLGVIDEEEVYHFFNVIPT 698
            SSD+E  ++V  EFYD + D+ DE WA       +K +K+  SDA LSCPACFT +C +CQRHE Y NQ+RA+FV N  V+ ++ +L+ED G  +  +G                     V C  C T++GV DE+EVYHFFNVIP+
Sbjct:   29 SSDDEIDYSVEPEFYDPDLDDTDERWA-------TKQRKDRTSDAVLSCPACFTTLCLDCQRHEKYVNQYRAMFVRNCKVKTDQ-ILREDKGKRKNRKGRAADSSTTSTEGENKGQAYHPVCCEVCSTEVGVYDEDEVYHFFNVIPS 167          
BLAST of mRNA_P-wetherbeei_contig150.4.1 vs. uniprot
Match: UPI0007EF7A7E (E2F-associated phosphoprotein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF7A7E)

HSP 1 Score: 115 bits (289), Expect = 2.660e-28
Identity = 66/145 (45.52%), Postives = 88/145 (60.69%), Query Frame = 3
Query:  312 KANSSDEEKLHNVADEFYDDEADNADEVWAAENMRPKSKGQKEVKSDADLSCPACFTLVCTECQRHEGYKNQFRALFVMNVTVQGEEMVL---------------KEDAG-VEERLRGVRCSECGTDLGVIDEEEVYHFFNVIPT 698
            K  SSD+E  ++V  EFYD E DN D++W    ++ + KGQ    SDA LSCPACF+ +C ECQRHE Y  Q+RA+FV N  ++ + +                 + DAG   E  + V CS C T++GVIDEEEVYHFFNV+P+
Sbjct:   19 KTISSDDEIDYSVKPEFYDPELDNKDQLW----VQKRRKGQY---SDAVLSCPACFSTLCLECQRHEKYVTQYRAVFVTNCKIKNDLVAQPGIKRKRGKRGKGSSETDAGSAGETFKQVCCSTCSTEVGVIDEEEVYHFFNVLPS 156          
BLAST of mRNA_P-wetherbeei_contig150.4.1 vs. uniprot
Match: V4KS56_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KS56_EUTSA)

HSP 1 Score: 115 bits (288), Expect = 2.980e-28
Identity = 66/147 (44.90%), Postives = 87/147 (59.18%), Query Frame = 3
Query:  312 KANSSDEEKLHNVADEFYDDEADNADEVWAAENMRPKSKGQKEVKSDADLSCPACFTLVCTECQRHEGYKNQFRALFVMNVTVQGEEMVL----------------KEDAGV--EERLRGVRCSECGTDLGVIDEEEVYHFFNVIPT 698
            K  S D+E  +++  EFYD + D+ DE+W    M  K  G+    SDA LSCPACFT VC ECQRHE Y  QFRA+FV+N  V  ++++                 K++ G    ERL  V CS C T++GV+D EE+YHFFNVIP+
Sbjct:    9 KTVSDDDEIDYSIKPEFYDSDLDDKDELW----MVKKRDGRT---SDAVLSCPACFTTVCLECQRHEQYVTQFRAVFVVNCEVDKDKVLQHSAVPSKVGKRMRDSEKQETGSADNERLNPVICSTCSTEIGVVDGEEIYHFFNVIPS 148          
BLAST of mRNA_P-wetherbeei_contig150.4.1 vs. uniprot
Match: Q9FTA3_ARATH (At5g08320 n=3 Tax=Arabidopsis TaxID=3701 RepID=Q9FTA3_ARATH)

HSP 1 Score: 115 bits (287), Expect = 4.190e-28
Identity = 67/148 (45.27%), Postives = 88/148 (59.46%), Query Frame = 3
Query:  312 KANSSDEEKLHNVADEFYDDEADNADEVWAAENMRPKSKGQKEVKSDADLSCPACFTLVCTECQRHEGYKNQFRALFVMNVTVQGEEMVLKE-----------------DAGVE--ERLRGVRCSECGTDLGVIDEEEVYHFFNVIPT 698
            K  S DEE  +++  EFYD + D+ DE+W    M  K  G+    SDA LSCPACFT VC ECQRHE Y  Q+RA+FV+N  V G + VL++                 + G E  E++  V CS C T++GV+D EE+YHFFNVIP+
Sbjct:    9 KTVSDDEEVDYSIKPEFYDSDIDDKDELW----MDKKRDGRT---SDALLSCPACFTTVCLECQRHEQYVTQYRAVFVVNCKV-GTDTVLQQNTMPLKVGKRRRDSEMQETGSEDSEKVNPVFCSACSTEIGVVDSEEIYHFFNVIPS 148          
BLAST of mRNA_P-wetherbeei_contig150.4.1 vs. uniprot
Match: A0A175YPP2_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YPP2_DAUCS)

HSP 1 Score: 115 bits (287), Expect = 9.390e-28
Identity = 65/141 (46.10%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  321 SSDEEKLHNVADEFYDDEADNADEVWAAENMRPKSKGQKEVKSDADLSCPACFTLVCTECQRHEGYKNQFRALFVMNVTVQGEEMVL---------------KEDAG-VEERLRGVRCSECGTDLGVIDEEEVYHFFNVIP 695
            SSD+E  ++V  EFYD E DN D++W    ++ + KGQ    SDA LSCPACF+ +C ECQRHE Y  Q+RA+FV N  ++ + +                 + DAG   E  + V CS C T++GVIDEEEVYHFFNV+P
Sbjct:   20 SSDDEIDYSVKPEFYDPELDNKDQLW----VQKRRKGQY---SDAVLSCPACFSTLCLECQRHEKYVTQYRAVFVTNCKIKNDLVAQPGIKRKRGKRGKGSSETDAGSAGETFKQVCCSTCSTEVGVIDEEEVYHFFNVLP 153          
BLAST of mRNA_P-wetherbeei_contig150.4.1 vs. uniprot
Match: A0A8J4RZ46_9ROSI (Uncharacterized protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A8J4RZ46_9ROSI)

HSP 1 Score: 114 bits (284), Expect = 1.340e-27
Identity = 62/140 (44.29%), Postives = 85/140 (60.71%), Query Frame = 3
Query:  321 SSDEEKLHNVADEFYDDEADNADEVWAAENMRPKSKGQKEVKSDADLSCPACFTLVCTECQRHEGYKNQFRALFVMNVTVQGEEMVLKEDA-----GVEER---------LRGVRCSECGTDLGVIDEEEVYHFFNVIPT 698
            S D+E  ++V  EFYD + D+ DE+W         K +K   SDA LSCPACFT +C ECQRHE Y  Q+RA+FV+N  +  ++ VLK++      G   R         L+ V CS C T++GV+DE+EVYHFFN +P+
Sbjct:   22 SDDDEIDYSVKPEFYDPKLDDKDELWV-------QKRRKGYTSDAVLSCPACFTTLCLECQRHEKYVTQYRAIFVINCKIDSDQ-VLKQNGPKLIKGKSRREASSVGGETLKKVSCSACSTEVGVVDEDEVYHFFNALPS 153          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig150.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J5BJZ0_9ASTE9.340e-3047.22Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
A0A0K9Q1T1_ZOSMR1.980e-2947.62E2F-associated phosphoprotein n=1 Tax=Zostera mari... [more]
A0A199VCB7_ANACO2.450e-2947.48E2F-associated phosphoprotein n=2 Tax=Ananas comos... [more]
A0A834YN18_9MAGN6.200e-2945.27Uncharacterized protein n=1 Tax=Tetracentron sinen... [more]
A0A5J9UZK4_9POAL6.610e-2944.22Uncharacterized protein n=1 Tax=Eragrostis curvula... [more]
UPI0007EF7A7E2.660e-2845.52E2F-associated phosphoprotein n=1 Tax=Daucus carot... [more]
V4KS56_EUTSA2.980e-2844.90Uncharacterized protein n=1 Tax=Eutrema salsugineu... [more]
Q9FTA3_ARATH4.190e-2845.27At5g08320 n=3 Tax=Arabidopsis TaxID=3701 RepID=Q9F... [more]
A0A175YPP2_DAUCS9.390e-2846.10Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A8J4RZ46_9ROSI1.340e-2744.29Uncharacterized protein n=3 Tax=Fagaceae TaxID=350... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig150contigP-wetherbeei_contig150:7509..8391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog72664.XP_006399322.1
PFAMsEapp_C
Model size883
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.09e-30
EggNOG OGsKOG3395@1|root,KOG3395@2759|Eukaryota,37UVS@33090|Viridiplantae,3GIMD@35493|Streptophyta,3I02B@3699|Brassicales
Ec32 ortholog descriptionE2F-associated phosphoprotein
Ec32 orthologEc-10_005350.1
DescriptionE2F-associated phosphoprotein
Cds size420
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186040.4204423-UTR-P-wetherbeei_contig150:7508..77921683186040.4204423-UTR-P-wetherbeei_contig150:7508..7792Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig150 7509..7792 +
1683186040.4412782-UTR-P-wetherbeei_contig150:8212..83911683186040.4412782-UTR-P-wetherbeei_contig150:8212..8391Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig150 8213..8391 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186040.4313748-CDS-P-wetherbeei_contig150:7792..82121683186040.4313748-CDS-P-wetherbeei_contig150:7792..8212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig150 7793..8212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig150.4.1prot_P-wetherbeei_contig150.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig150 7793..8212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig150.4.1

>prot_P-wetherbeei_contig150.4.1 ID=prot_P-wetherbeei_contig150.4.1|Name=mRNA_P-wetherbeei_contig150.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MDNNNGEEAKANSSDEEKLHNVADEFYDDEADNADEVWAAENMRPKSKGQ
KEVKSDADLSCPACFTLVCTECQRHEGYKNQFRALFVMNVTVQGEEMVLK
EDAGVEERLRGVRCSECGTDLGVIDEEEVYHFFNVIPTG*
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mRNA from alignment at P-wetherbeei_contig150:7509..8391+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig150.4.1 ID=mRNA_P-wetherbeei_contig150.4.1|Name=mRNA_P-wetherbeei_contig150.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=883bp|location=Sequence derived from alignment at P-wetherbeei_contig150:7509..8391+ (Phaeothamnion wetherbeei SAG_119_79)
AAACTACTGCCTCCACGTGTTTCAGCAAGTGGTGCAGCGGTATTTTCAAG CATTTCCAGCCCCGGGAAGAAAATTAAAAAAAAAAAAATTTCGCTGTTGG CTGTTGGGTCTTTGAAGTGGTTTTGAGAGGTTTTTTTTGAGCCACAACGT AGATTCGCACAGCTTGCTGGCCTGAGCCAAGAGAAGAGTCGGAGAGCACA CAAGAAACACACGGAACAACAACAGAGAAAGTACAAGAGGGTGAGTGCCG GGCGGCAAACGCAGCAGACTGAGAAAGCTATACGATGGATAACAACAACG GCGAAGAAGCCAAGGCAAACAGCAGCGACGAGGAAAAGCTGCACAACGTG GCCGATGAATTTTATGACGATGAGGCAGACAACGCCGACGAAGTCTGGGC GGCTGAAAACATGCGGCCTAAAAGCAAAGGACAGAAGGAGGTCAAGTCCG ACGCTGACCTGAGCTGCCCCGCGTGCTTCACGCTCGTCTGCACGGAATGC CAGCGGCACGAAGGCTACAAGAATCAGTTCCGGGCGCTTTTTGTGATGAA TGTCACCGTGCAAGGCGAAGAGATGGTGCTGAAGGAAGACGCGGGCGTCG AGGAGCGCCTCCGCGGCGTACGTTGCAGCGAGTGCGGGACAGACCTTGGC GTGATCGACGAAGAAGAAGTCTACCATTTCTTCAACGTCATCCCTACGGG CTGACGGCCGCGGGGCTAATACCAGCGGCTGGCGCTTTTTGAAGCACGGA CGCACGGGCACGGCATAAAATGGAGGGAAAAGGCGCTGGACTCGCTGTCC CCTCATTGCATGTAAGTAACTGAAGGTTGAACGTGATAGAAATGGAGATA GATGTTCACAAGCAGCAGCAAATACATAGCTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig150:7509..8391+

>mRNA_P-wetherbeei_contig150.4.1 ID=mRNA_P-wetherbeei_contig150.4.1|Name=mRNA_P-wetherbeei_contig150.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig150:7509..8391+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGATAACAACAACGGCGAAGAAGCCAAGGCAAACAGCAGCGACGAGGA
AAAGCTGCACAACGTGGCCGATGAATTTTATGACGATGAGGCAGACAACG
CCGACGAAGTCTGGGCGGCTGAAAACATGCGGCCTAAAAGCAAAGGACAG
AAGGAGGTCAAGTCCGACGCTGACCTGAGCTGCCCCGCGTGCTTCACGCT
CGTCTGCACGGAATGCCAGCGGCACGAAGGCTACAAGAATCAGTTCCGGG
CGCTTTTTGTGATGAATGTCACCGTGCAAGGCGAAGAGATGGTGCTGAAG
GAAGACGCGGGCGTCGAGGAGCGCCTCCGCGGCGTACGTTGCAGCGAGTG
CGGGACAGACCTTGGCGTGATCGACGAAGAAGAAGTCTACCATTTCTTCA
ACGTCATCCCTACGGGCTGA
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