mRNA_P-wetherbeei_contig150.2.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig150.2.3
Unique NamemRNA_P-wetherbeei_contig150.2.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig150.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig150contigP-wetherbeei_contig150:5178..7425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2102
Hectar predicted targeting categoryother localisation
Exons2
Cds size1173
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186040.3384445-UTR-P-wetherbeei_contig150:5177..55501683186040.3384445-UTR-P-wetherbeei_contig150:5177..5550Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig150 5178..5550 -
1683186040.3810933-UTR-P-wetherbeei_contig150:6869..74251683186040.3810933-UTR-P-wetherbeei_contig150:6869..7425Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig150 6870..7425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186040.356704-CDS-P-wetherbeei_contig150:5550..61641683186040.356704-CDS-P-wetherbeei_contig150:5550..6164Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig150 5551..6164 -
1683186040.3683417-CDS-P-wetherbeei_contig150:6310..68691683186040.3683417-CDS-P-wetherbeei_contig150:6310..6869Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig150 6311..6869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig150.2.3prot_P-wetherbeei_contig150.2.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig150 5551..6869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig150.2.3

>prot_P-wetherbeei_contig150.2.3 ID=prot_P-wetherbeei_contig150.2.3|Name=mRNA_P-wetherbeei_contig150.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=391bp
MQALKNRFAEYDFQYTHRLVALTRVKDEGTFRSAIYSGLEESKQASIGRL
VRPPQGADFGAAFFAVVSAVQGSPPAPSKAAAKKKSPAWRASVGCRSAAT
GEAGGGGGSGGEEEDGDEGLDDEALFELVSIYSWARAAVYTSDGEVQVEA
LSHSDVIDVLRRSGAIIMDKKTGDPAVETRALRSLKSMSDATFLGNCQNG
AELLMSSINNNRTWRETYKHPPMTLRGASEWLRKAVARDNGSRSRKKGGV
GGAGGGGEEAVHVTVPITFDMEQRTWRVILDDLSDELAWYSCAWMDELEH
GGNGFFEKELLPMLRTAAVGDVGVGIGGGGGGGGCGGGGGGGGGVSGGDA
AMLADALAAVRQPHGLAPAPVGTSNRGPAAQREGGRTGAS*
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mRNA from alignment at P-wetherbeei_contig150:5178..7425-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig150.2.3 ID=mRNA_P-wetherbeei_contig150.2.3|Name=mRNA_P-wetherbeei_contig150.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2248bp|location=Sequence derived from alignment at P-wetherbeei_contig150:5178..7425- (Phaeothamnion wetherbeei SAG_119_79)
GATTTAGAGGCCGCCGGGCACAAAACCGCGCTGCACCCTCTCTCGTCTCC
CGCATCGGCTGCAGCACTCGGCTGCCTGAGGCGCTTCCCCTTTCTGCTTG
GTTTCCGGGCGAGGACTGTCTTCGTTGTCCCTCTCTTGATCTGTCGAGAC
CATGGGAGATGAGGATGTGGACCCACGACACTACGATGAGGGCGCAGACA
AAAGCTTGGAGAACGAACAGGAGGAGGAGTGCCCCTCGTCCGGATGGTCC
TCGGAGCATGACGGCCCGCAAACGAAGAGAGAACGAGGCCGCAGCCAAAG
GGGCTCGATCTCCGGGTGACGCAACCGCTTTTGGTGCTTGCCTTTCCGGC
TCTCGTGTTTTATGATCGCGGGTCCCTCCGTTCTCTTGTCTCGATCAACA
CAGTGTCTTGTCTGCGAAGGTATCCTCTAAGAGAGCGTCGAAGGTCTCCC
GTTCAAGCTCCAACTCCGAGCGCACTACGCTGGCGAGGCCGGCTTCTACT
CATTCTTCTGCAGGAATAGCTGGGCTGAAGGAAAGGCCGTCGACCTCTCT
TCCTTCATGCAGGCACTCAAGAATCGCTTCGCGGAGTACGACTTCCAGTA
CACTCACCGGCTCGTTGCACTGACGCGCGTCAAGGACGAGGGCACGTTCC
GGTCGGCCATCTACTCGGGCCTCGAAGAGAGCAAGCAAGCCAGCATTGGT
CGGCTGGTCAGGCCGCCCCAGGGCGCAGACTTTGGCGCCGCCTTCTTCGC
CGTCGTCAGCGCGGTGCAAGGCTCGCCGCCGGCGCCCAGCAAGGCCGCCG
CCAAAAAGAAGTCGCCGGCTTGGCGCGCTTCTGTCGGGTGCCGGTCAGCT
GCAACCGGTGAGGCCGGCGGCGGCGGCGGCAGCGGCGGGGAGGAGGAGGA
TGGAGACGAGGGCCTTGACGACGAGGCGCTCTTCGAGCTCGTCTCTATCT
ACTCGTGGGCGCGCGCCGCGGTCTACACGTCCGATGGCGAGGTGCAGGTG
GAGGCGCTCTCCCACTCCGACGTCATCGATGTCCTGCGCCGGAGTGGCGC
CATCATCATGGACAAGAAAACTGGCGACCCAGCCGTTGAGACCAGGGCGC
TGCGCAGCCTTAAGAGTAAGATGTTTTCAAGCATCTCTGTCTTTCTCTGT
GAAAATGTCCTTTGGGGTTGCCTTAATCCATTTTCTTGCTGCCTCTCTAA
GTTACCCGCCGTCCATCACACCGTGCCCCTCGATTGGAAACTGTGTGCTG
CTCACCGCAAGGCATGTCGGACGCGACGTTTTTGGGCAACTGCCAGAACG
GCGCCGAGCTCCTGATGTCCTCGATCAACAACAACCGCACCTGGCGGGAG
ACTTACAAGCACCCGCCGATGACGCTTCGCGGCGCGTCGGAGTGGTTGCG
CAAGGCAGTCGCACGGGATAATGGCAGCCGGAGTCGCAAGAAGGGCGGCG
TCGGTGGTGCGGGCGGCGGTGGAGAAGAGGCGGTGCATGTCACTGTCCCA
ATTACCTTCGACATGGAGCAGCGCACATGGCGCGTCATTCTGGATGATCT
CAGCGATGAGCTGGCTTGGTACTCTTGCGCGTGGATGGATGAGCTAGAGC
ATGGGGGCAACGGTTTTTTCGAGAAGGAGCTGCTTCCGATGCTGCGGACG
GCCGCCGTCGGCGATGTGGGCGTCGGCATTGGCGGCGGCGGCGGCGGCGG
CGGCTGCGGCGGCGGCGGCGGTGGCGGTGGCGGCGTGAGCGGCGGCGACG
CGGCGATGTTGGCGGATGCTCTCGCTGCTGTTCGCCAGCCGCATGGCCTG
GCGCCGGCACCGGTGGGAACCAGCAACCGAGGCCCAGCGGCTCAGCGTGA
GGGAGGTAGAACGGGAGCTTCGTGAGCTCCGCCAGCTGTGCAACGAGGGC
GTGATAAGCGAGGAGGAGAACAGAGCAGGCAGAGAGCGAATCCTTAGCCA
CTTGTAACTGCCTTTTGGAGAGAGGATTCCATGGCGGCCTTCTTGTTGAC
TCTATGAGAGGTTGAGACGTTGCAGTAAGGATAGCGAGTGGCCACCACCG
GCATGCATGTATGAAAGGAGAGCTGCAAAATATCAAGAACAAGCGCTCCA
AGTGAGCTTCAAGGCGGAAAACATGGGAAGAAACAGAAAAAGATGTAACA
GGAGAAGACACACGCAACGGGAGGAATGAGAAGCCGGCGGGTTGGGGCAG
GAAGCAAAAGCTGTTCAGGTGGTGGTGGTAAGAGCCGCCTCCAAAAAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig150:5178..7425-

>mRNA_P-wetherbeei_contig150.2.3 ID=mRNA_P-wetherbeei_contig150.2.3|Name=mRNA_P-wetherbeei_contig150.2.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1173bp|location=Sequence derived from alignment at P-wetherbeei_contig150:5178..7425- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGCACTCAAGAATCGCTTCGCGGAGTACGACTTCCAGTACACTCA
CCGGCTCGTTGCACTGACGCGCGTCAAGGACGAGGGCACGTTCCGGTCGG
CCATCTACTCGGGCCTCGAAGAGAGCAAGCAAGCCAGCATTGGTCGGCTG
GTCAGGCCGCCCCAGGGCGCAGACTTTGGCGCCGCCTTCTTCGCCGTCGT
CAGCGCGGTGCAAGGCTCGCCGCCGGCGCCCAGCAAGGCCGCCGCCAAAA
AGAAGTCGCCGGCTTGGCGCGCTTCTGTCGGGTGCCGGTCAGCTGCAACC
GGTGAGGCCGGCGGCGGCGGCGGCAGCGGCGGGGAGGAGGAGGATGGAGA
CGAGGGCCTTGACGACGAGGCGCTCTTCGAGCTCGTCTCTATCTACTCGT
GGGCGCGCGCCGCGGTCTACACGTCCGATGGCGAGGTGCAGGTGGAGGCG
CTCTCCCACTCCGACGTCATCGATGTCCTGCGCCGGAGTGGCGCCATCAT
CATGGACAAGAAAACTGGCGACCCAGCCGTTGAGACCAGGGCGCTGCGCA
GCCTTAAGAGCATGTCGGACGCGACGTTTTTGGGCAACTGCCAGAACGGC
GCCGAGCTCCTGATGTCCTCGATCAACAACAACCGCACCTGGCGGGAGAC
TTACAAGCACCCGCCGATGACGCTTCGCGGCGCGTCGGAGTGGTTGCGCA
AGGCAGTCGCACGGGATAATGGCAGCCGGAGTCGCAAGAAGGGCGGCGTC
GGTGGTGCGGGCGGCGGTGGAGAAGAGGCGGTGCATGTCACTGTCCCAAT
TACCTTCGACATGGAGCAGCGCACATGGCGCGTCATTCTGGATGATCTCA
GCGATGAGCTGGCTTGGTACTCTTGCGCGTGGATGGATGAGCTAGAGCAT
GGGGGCAACGGTTTTTTCGAGAAGGAGCTGCTTCCGATGCTGCGGACGGC
CGCCGTCGGCGATGTGGGCGTCGGCATTGGCGGCGGCGGCGGCGGCGGCG
GCTGCGGCGGCGGCGGCGGTGGCGGTGGCGGCGTGAGCGGCGGCGACGCG
GCGATGTTGGCGGATGCTCTCGCTGCTGTTCGCCAGCCGCATGGCCTGGC
GCCGGCACCGGTGGGAACCAGCAACCGAGGCCCAGCGGCTCAGCGTGAGG
GAGGTAGAACGGGAGCTTCGTGA
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