mRNA_P-wetherbeei_contig14997.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14997.3.1
Unique NamemRNA_P-wetherbeei_contig14997.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14997.3.1 vs. uniprot
Match: A0A3C0TV91_9PROT (Rod shape-determining protein RodA n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TV91_9PROT)

HSP 1 Score: 209 bits (532), Expect = 2.500e-67
Identity = 105/143 (73.43%), Postives = 116/143 (81.12%), Query Frame = 1
Query:    1 MKCFVRPLMIGAILLCAVPAQAGETPAPDGAKLYIISPADGAKLASPVKVVFGLSGMGVAPAGVEKENTGHHHLFVDAPLPEGAALNEAIAKDAQHLHFGGGQTEAKVELAPGKHTLQLLLGDHNHIPHKAPVASEVVTIIVE 429
            MK F   L+    LL    AQAGETPAP GA  YII+PADGAK+ASPVKVVFGL GMGVAPAGVEKE+TGHHHL +D P+P+G AL+E +  DAQHLHFG G+TEA VELAPG HTLQLLLGDHNHIPHK PVASE+VTI VE
Sbjct:    1 MKAFFPALLAFGCLLGINAAQAGETPAPVGAAAYIITPADGAKVASPVKVVFGLKGMGVAPAGVEKEHTGHHHLLIDTPMPQGEALDEPLPNDAQHLHFGKGETEAMVELAPGAHTLQLLLGDHNHIPHKQPVASELVTITVE 143          
BLAST of mRNA_P-wetherbeei_contig14997.3.1 vs. uniprot
Match: A0A2E5BS99_9HYPH (Rod shape-determining protein RodA n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2E5BS99_9HYPH)

HSP 1 Score: 181 bits (459), Expect = 2.780e-56
Identity = 87/137 (63.50%), Postives = 104/137 (75.91%), Query Frame = 1
Query:   19 PLMIGAILLCAVPAQAGETPAPDGAKLYIISPADGAKLASPVKVVFGLSGMGVAPAGVEKENTGHHHLFVDAPLPEGAALNEAIAKDAQHLHFGGGQTEAKVELAPGKHTLQLLLGDHNHIPHKAPVASEVVTIIVE 429
            P ++ A ++ A    AGETPAP+GA++Y ISP DGA  +SPV VVFGL GMGVAPAGV KE TGHHHL VD P+ EG  L+ +I  D  H+HFGGGQTE ++ELAPG HTLQLLLGD NHIPH  P+ S+V+TI VE
Sbjct:    5 PFLLAATMMSA---SAGETPAPEGARVYFISPEDGATTSSPVNVVFGLQGMGVAPAGVAKEMTGHHHLLVDTPMLEGEELDYSIPADEHHVHFGGGQTETRIELAPGTHTLQLLLGDENHIPHNPPIVSDVITITVE 138          
BLAST of mRNA_P-wetherbeei_contig14997.3.1 vs. uniprot
Match: A0A2C9D5D9_9HYPH (DUF4399 domain-containing protein n=1 Tax=Hartmannibacter diazotrophicus TaxID=1482074 RepID=A0A2C9D5D9_9HYPH)

HSP 1 Score: 181 bits (458), Expect = 5.100e-56
Identity = 91/143 (63.64%), Postives = 109/143 (76.22%), Query Frame = 1
Query:   10 FVRPLMIGAILLCAVPAQAGETPAPDGAKLYIISPADGAKLASPVKVVFGLSGMGVAPAGVEKENTGHHHLFVDAP-LPEGAA--LNEAIAKDAQHLHFGGGQTEAKVELAPGKHTLQLLLGDHNHIPHKAPVASEVVTIIVE 429
            F  P +    +LC  PA AGETPAP+GAK+Y I+P DG  ++SPVKVVFGLSGMGVAPAG +KE TGHHHLF+D P L EG A  L+  I+ D  H+HFGGGQTE  +EL+PG+HTLQL+LGD NHIPH  PVAS V+TI V+
Sbjct:    5 FAIPFLCAGAMLCG-PALAGETPAPEGAKVYFITPMDGETVSSPVKVVFGLSGMGVAPAGTDKEKTGHHHLFIDVPPLGEGEAGELDNPISSDDHHVHFGGGQTETSLELSPGQHTLQLVLGDMNHIPHNPPVASGVITITVK 146          
BLAST of mRNA_P-wetherbeei_contig14997.3.1 vs. uniprot
Match: A0A081B6W9_9HYPH (Conserved protein n=1 Tax=Tepidicaulis marinus TaxID=1333998 RepID=A0A081B6W9_9HYPH)

HSP 1 Score: 176 bits (447), Expect = 2.250e-54
Identity = 85/140 (60.71%), Postives = 105/140 (75.00%), Query Frame = 1
Query:   10 FVRPLMIGAILLCAVPAQAGETPAPDGAKLYIISPADGAKLASPVKVVFGLSGMGVAPAGVEKENTGHHHLFVDAPLPEGAALNEAIAKDAQHLHFGGGQTEAKVELAPGKHTLQLLLGDHNHIPHKAPVASEVVTIIVE 429
            F+  L++      A  A AGETPAP+GA++Y I+P DGA ++SPV V FGL GMGVAPAG++K++TGHHHL VD P+ EG AL+ +I  D  H+HFGGGQTE  +EL PG HTLQLLLGD NHIPH  P+ASE +TI VE
Sbjct:    5 FIPALILALAPALASGALAGETPAPEGAEVYFITPEDGAAVSSPVTVRFGLKGMGVAPAGIDKDHTGHHHLLVDTPMLEGEALDYSIPADENHVHFGGGQTETTIELEPGTHTLQLLLGDMNHIPHDPPIASEQITITVE 144          
BLAST of mRNA_P-wetherbeei_contig14997.3.1 vs. uniprot
Match: UPI001872B70B (DUF4399 domain-containing protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001872B70B)

HSP 1 Score: 175 bits (443), Expect = 8.060e-54
Identity = 85/136 (62.50%), Postives = 100/136 (73.53%), Query Frame = 1
Query:   22 LMIGAILLCAVPAQAGETPAPDGAKLYIISPADGAKLASPVKVVFGLSGMGVAPAGVEKENTGHHHLFVDAPLPEGAALNEAIAKDAQHLHFGGGQTEAKVELAPGKHTLQLLLGDHNHIPHKAPVASEVVTIIVE 429
            ++  A+ L A PA AGETPAP GA LY ISP DGA ++SPV + FGL GMGVAPAG EK+ TGHHHL +D   P G ALNE I  D  H HFGGGQTEA +ELAPG HTLQL+LGD +HIPH  PV S+ +T+ V+
Sbjct:    5 ILAAALALFAGPALAGETPAPAGAALYFISPQDGATVSSPVTMRFGLKGMGVAPAGTEKDKTGHHHLLIDTATPSGDALNEPIPADDHHKHFGGGQTEASIELAPGSHTLQLVLGDWSHIPHNPPVMSKQITVTVK 140          
BLAST of mRNA_P-wetherbeei_contig14997.3.1 vs. uniprot
Match: A0A2A5EKK6_9HYPH (Rod shape-determining protein RodA n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5EKK6_9HYPH)

HSP 1 Score: 174 bits (440), Expect = 2.700e-53
Identity = 85/132 (64.39%), Postives = 99/132 (75.00%), Query Frame = 1
Query:   34 AILLCAVPAQAGETPAPDGAKLYIISPADGAKLASPVKVVFGLSGMGVAPAGVEKENTGHHHLFVDAPLPEGAALNEAIAKDAQHLHFGGGQTEAKVELAPGKHTLQLLLGDHNHIPHKAPVASEVVTIIVE 429
            A+L+      AGETPAP+GA +YIISP DGA +ASPV V FGLSGMGVAPAG+EK+ TGHHHL +D  +  G  L  +I  D  H+HFGGGQTE +VEL  G HTLQLLLGD NH+PH  P+ASEVVTI VE
Sbjct:   14 AVLMMGTSLHAGETPAPEGAAVYIISPVDGAIVASPVTVRFGLSGMGVAPAGIEKDKTGHHHLLLDTEMLSGENLXYSIPADENHIHFGGGQTETQVELTQGTHTLQLLLGDLNHVPHNPPIASEVVTITVE 145          
BLAST of mRNA_P-wetherbeei_contig14997.3.1 vs. uniprot
Match: A0A3B9BML5_9PROT (Rod shape-determining protein RodA n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9BML5_9PROT)

HSP 1 Score: 172 bits (435), Expect = 9.980e-53
Identity = 82/127 (64.57%), Postives = 96/127 (75.59%), Query Frame = 1
Query:   49 AVPAQAGETPAPDGAKLYIISPADGAKLASPVKVVFGLSGMGVAPAGVEKENTGHHHLFVDAPLPEGAALNEAIAKDAQHLHFGGGQTEAKVELAPGKHTLQLLLGDHNHIPHKAPVASEVVTIIVE 429
            + P  AGETPAP+GA++Y I+P++G  +   V V FGLSG+GVAPAGVEK  TGHHHL +D  LPEG AL+  I  DAQH HFGGGQTEA V L PG+H LQLLLGDHNHIPH  P+ SE +TI VE
Sbjct:    5 STPVMAGETPAPEGARVYFITPSEGETVKGDVHVRFGLSGVGVAPAGVEKAGTGHHHLLIDTDLPEGEALDSPIPSDAQHRHFGGGQTEAIVALPPGEHRLQLLLGDHNHIPHNPPIHSERITITVE 131          
BLAST of mRNA_P-wetherbeei_contig14997.3.1 vs. uniprot
Match: UPI0012E24F68 (DUF4399 domain-containing protein n=1 Tax=Oceanobacillus sp. HTM 045 TaxID=2676312 RepID=UPI0012E24F68)

HSP 1 Score: 172 bits (435), Expect = 1.370e-52
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 1
Query:   28 IGAILLCAVPAQAGETPAPDGAKLYIISPADGAKLASPVKVVFGLSGMGVAPAGVEKENTGHHHLFVD-APLPEGAALNEAIAKDAQHLHFGGGQTEAKVELAPGKHTLQLLLGDHNHIPHKAPVASEVVTIIVE 429
            + A  L A PA AGETPAP+GAK+Y I+PADGA ++  V V FGL+GMGVAPAG E+ENTGHHH+FVD AP  E  A  + I  D  H+HFGGGQTE  ++LAPG+HTLQL+LGD NHIPH  PV SEV+TI VE
Sbjct:    8 LAAAALLAAPAFAGETPAPEGAKVYFIAPADGATVSGSVTVQFGLAGMGVAPAGTERENTGHHHIFVDRAPFGEADAA-DPIPADDNHIHFGGGQTEVTLDLAPGEHTLQLVLGDMNHIPHDPPVVSEVITITVE 141          
BLAST of mRNA_P-wetherbeei_contig14997.3.1 vs. uniprot
Match: A0A0L6CZU7_9RHOB (DUF4399 domain-containing protein n=3 Tax=Roseovarius TaxID=74030 RepID=A0A0L6CZU7_9RHOB)

HSP 1 Score: 169 bits (429), Expect = 1.360e-51
Identity = 83/144 (57.64%), Postives = 106/144 (73.61%), Query Frame = 1
Query:   13 VRPLMIGAILLCAVPAQAGETPAPDGAKLYIISPADGAKLASPVKVVFGLSGMGVAPAGVEKENTGHHHLFVDAPL----PEGAA-LNEAIAKDAQHLHFGGGQTEAKVELAPGKHTLQLLLGDHNHIPHKAPVASEVVTIIVE 429
            +  L+  A+L  A PA AG+TPAP+GA++Y ++ +DG  +++PV VVFGL GMGVAPAG EKENTGHHH+ VD P     PEGA  LN ++  D  H+HFGGGQT+  ++L PG HTLQL+LGD NH+PH  PV SEV+TI VE
Sbjct:    4 IATLVTAALLAVAAPAFAGDTPAPEGAEVYFVNLSDGDSVSAPVTVVFGLKGMGVAPAGTEKENTGHHHVLVDRPPLGEGPEGAEELNTSLPADDNHIHFGGGQTQVSLDLEPGPHTLQLVLGDMNHVPHDPPVTSEVITITVE 147          
BLAST of mRNA_P-wetherbeei_contig14997.3.1 vs. uniprot
Match: A0A1Y6K9V6_9BRAD (DUF4399 domain-containing protein n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A1Y6K9V6_9BRAD)

HSP 1 Score: 169 bits (429), Expect = 1.690e-51
Identity = 83/122 (68.03%), Postives = 96/122 (78.69%), Query Frame = 1
Query:   64 AGETPAPDGAKLYIISPADGAKLASPVKVVFGLSGMGVAPAGVEKENTGHHHLFVDAPLPEGAALNEAIAKDAQHLHFGGGQTEAKVELAPGKHTLQLLLGDHNHIPHKAPVASEVVTIIVE 429
            AGETPAPD AK Y I+  DG K++SPV + FGLSGMGVAP+G E  NTGHHHL +DAP  EG ALNEAI  DA+H+HFG GQTEA V L+PGKHTLQL+LGD +HIPH  PV SE ++I VE
Sbjct:   25 AGETPAPDNAKAYFINLKDGDKVSSPVLIRFGLSGMGVAPSGTEAPNTGHHHLLIDAPALEGDALNEAIPVDAEHVHFGKGQTEASVNLSPGKHTLQLVLGDWSHIPHNKPVMSERISITVE 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14997.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TV91_9PROT2.500e-6773.43Rod shape-determining protein RodA n=1 Tax=Alphapr... [more]
A0A2E5BS99_9HYPH2.780e-5663.50Rod shape-determining protein RodA n=1 Tax=Rhodobi... [more]
A0A2C9D5D9_9HYPH5.100e-5663.64DUF4399 domain-containing protein n=1 Tax=Hartmann... [more]
A0A081B6W9_9HYPH2.250e-5460.71Conserved protein n=1 Tax=Tepidicaulis marinus Tax... [more]
UPI001872B70B8.060e-5462.50DUF4399 domain-containing protein n=1 Tax=Pelagibi... [more]
A0A2A5EKK6_9HYPH2.700e-5364.39Rod shape-determining protein RodA n=1 Tax=Rhodobi... [more]
A0A3B9BML5_9PROT9.980e-5364.57Rod shape-determining protein RodA n=3 Tax=Alphapr... [more]
UPI0012E24F681.370e-5264.44DUF4399 domain-containing protein n=1 Tax=Oceanoba... [more]
A0A0L6CZU7_9RHOB1.360e-5157.64DUF4399 domain-containing protein n=3 Tax=Roseovar... [more]
A0A1Y6K9V6_9BRAD1.690e-5168.03DUF4399 domain-containing protein n=3 Tax=unclassi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14997contigP-wetherbeei_contig14997:1184..1615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1333998.M2A_0286
PFAMsDUF4399
Model size432
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.7e-55
EggNOG OGs2CD0I@1|root,32RWS@2|Bacteria,1N0MC@1224|Proteobacteria,2U9CM@28211|Alphaproteobacteria,4BSAQ@82117|unclassified Alphaproteobacteria
DescriptionDomain of unknown function (DUF4399)
Cds size432
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186039.7127805-CDS-P-wetherbeei_contig14997:1183..16151683186039.7127805-CDS-P-wetherbeei_contig14997:1183..1615Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14997 1184..1615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14997.3.1prot_P-wetherbeei_contig14997.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14997 1184..1615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14997.3.1

>prot_P-wetherbeei_contig14997.3.1 ID=prot_P-wetherbeei_contig14997.3.1|Name=mRNA_P-wetherbeei_contig14997.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MKCFVRPLMIGAILLCAVPAQAGETPAPDGAKLYIISPADGAKLASPVKV
VFGLSGMGVAPAGVEKENTGHHHLFVDAPLPEGAALNEAIAKDAQHLHFG
GGQTEAKVELAPGKHTLQLLLGDHNHIPHKAPVASEVVTIIVE*
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mRNA from alignment at P-wetherbeei_contig14997:1184..1615-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14997.3.1 ID=mRNA_P-wetherbeei_contig14997.3.1|Name=mRNA_P-wetherbeei_contig14997.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig14997:1184..1615- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAATGTTTTGTGCGTCCACTGATGATTGGGGCAATCCTGTTATGCGC TGTCCCGGCACAGGCGGGCGAAACCCCCGCACCCGATGGCGCGAAGCTCT ATATTATCAGCCCCGCCGATGGGGCAAAGCTTGCATCTCCGGTGAAAGTG GTATTCGGCCTAAGCGGCATGGGGGTTGCGCCCGCCGGTGTCGAAAAGGA AAATACCGGGCATCATCATCTGTTTGTCGATGCGCCATTGCCCGAAGGTG CGGCGCTGAATGAAGCCATCGCCAAGGATGCGCAGCATCTGCATTTCGGC GGCGGCCAGACCGAGGCGAAGGTGGAACTGGCGCCGGGAAAACACACGCT GCAATTATTGCTGGGCGATCACAACCACATCCCGCATAAGGCCCCGGTTG CATCAGAAGTGGTCACCATTATAGTGGAATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14997:1184..1615-

>mRNA_P-wetherbeei_contig14997.3.1 ID=mRNA_P-wetherbeei_contig14997.3.1|Name=mRNA_P-wetherbeei_contig14997.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig14997:1184..1615- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAATGTTTTGTGCGTCCACTGATGATTGGGGCAATCCTGTTATGCGC
TGTCCCGGCACAGGCGGGCGAAACCCCCGCACCCGATGGCGCGAAGCTCT
ATATTATCAGCCCCGCCGATGGGGCAAAGCTTGCATCTCCGGTGAAAGTG
GTATTCGGCCTAAGCGGCATGGGGGTTGCGCCCGCCGGTGTCGAAAAGGA
AAATACCGGGCATCATCATCTGTTTGTCGATGCGCCATTGCCCGAAGGTG
CGGCGCTGAATGAAGCCATCGCCAAGGATGCGCAGCATCTGCATTTCGGC
GGCGGCCAGACCGAGGCGAAGGTGGAACTGGCGCCGGGAAAACACACGCT
GCAATTATTGCTGGGCGATCACAACCACATCCCGCATAAGGCCCCGGTTG
CATCAGAAGTGGTCACCATTATAGTGGAATAA
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