mRNA_P-wetherbeei_contig14962.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14962.1.1
Unique NamemRNA_P-wetherbeei_contig14962.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14962.1.1 vs. uniprot
Match: A0A6H5KVU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU7_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.290e-18
Identity = 78/258 (30.23%), Postives = 103/258 (39.92%), Query Frame = 1 
Query:   25 ESEFVKHAMERALQLQREQPDTAAN------LPEVLTDDKFVEKLVG-GLGRRGLQRLDALQRLQVLMREAIEATITESPPIPAAAXXXXXXXXXXXXAARGKAVDTDALAAAGADPDAVVAGDGGDNGADGGTDVGGVPAAPMPGKRGRKPAGFGGMAGPPSTNFTGMVTAQQVYDAAGGADGDMDAAVEALLPFGIGQRLNLGTERPAW-TRLAPWWDLEVDHDLILGVFLHGLGECGRIRQDPRLCFERKMRAYE 774
            ESEFV+ AM  A  +Q    D  AN      +P VL ++KFVEKLV  GL ++ LQRLD L+RLQ+++ +AIE  + + P                    R ++V+                                                                              DMD  V AL PFG+   L LG  RP W + + PWWDLE D DL+LG FLHG G   +++ DPRLCF  K+   E
Sbjct: 1476 ESEFVRQAMNAAKNIQ----DQIANGVRTIDIPAVLREEKFVEKLVKQGLAKKALQRLDLLRRLQIMVSKAIERVLRDMP---------------RADRQRNESVE------------------------------------------------------------------------------DMDLQVSALAPFGLSTALPLGDVRPKWASSVQPWWDLECDRDLLLGTFLHGFGAYPKMKADPRLCFSTKILGLE 1636
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BLAST of mRNA_P-wetherbeei_contig14962.1.1 vs. uniprot
Match: D8LDU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU9_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 4.220e-18
Identity = 77/258 (29.84%), Postives = 102/258 (39.53%), Query Frame = 1 
Query:   25 ESEFVKHAMERALQLQREQPDTAAN------LPEVLTDDKFVEKLVG-GLGRRGLQRLDALQRLQVLMREAIEATITESPPIPAAAXXXXXXXXXXXXAARGKAVDTDALAAAGADPDAVVAGDGGDNGADGGTDVGGVPAAPMPGKRGRKPAGFGGMAGPPSTNFTGMVTAQQVYDAAGGADGDMDAAVEALLPFGIGQRLNLGTERPAW-TRLAPWWDLEVDHDLILGVFLHGLGECGRIRQDPRLCFERKMRAYE 774
            ESEFV+ AM  A  +Q    D  AN      +P VL ++KFVEKLV  GL ++ LQRLD L+RLQ+++ + IE  + + P                    R ++V+                                                                              DMD  V AL PFG+   L LG  RP W + + PWWDLE D DL+LG FLHG G   +++ DPRLCF  K+   E
Sbjct: 1438 ESEFVRQAMNAAKDIQ----DQIANGVRTIDIPAVLREEKFVEKLVKQGLAKKALQRLDLLRRLQIMVSKTIERVLRDMP---------------RADRQRNESVE------------------------------------------------------------------------------DMDLQVSALAPFGLSTALPLGDVRPKWASSVQPWWDLECDRDLLLGTFLHGFGAYPKMKADPRLCFSTKILGLE 1598
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BLAST of mRNA_P-wetherbeei_contig14962.1.1 vs. uniprot
Match: A0A024UQC0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQC0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.460e-11
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:  556 DMDAAVEALLPFGIGQRLN--LGTERPAWTRLAPWWDLEVDHDLILGVFLHGLGECGRIRQDPRLCFERK 759
            D+DA VE L    +  RL+  +G++RP W+ L PWWD   D  L +GVFLHG G C +I  DPRLCF ++
Sbjct: 1217 DLDARVEFLGMDNVLNRLDFAIGSDRPQWSNLTPWWDSVADKSLCIGVFLHGYGRCAQIISDPRLCFHQR 1286
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BLAST of mRNA_P-wetherbeei_contig14962.1.1 vs. uniprot
Match: W7U0D9_9STRA (Myb domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0D9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.040e-11
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:  595 IGQRLNLGTERPAWTRLAPWWDLEVDHDLILGVFLHGLGECGRIRQDPRLCFERKMRAY 771
            +   + LG  RP+WT++ PWWDLE D  L+LGV++HG      IR DP LCF RKM A+
Sbjct:  892 VAAHILLGEVRPSWTQVTPWWDLECDKHLLLGVYMHGFQNYNAIRDDPNLCFRRKMEAW 950
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14962.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KVU7_9PHAE1.290e-1830.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDU9_ECTSI4.220e-1829.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024UQC0_9STRA2.460e-1148.57Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
W7U0D9_9STRA6.040e-1150.85Myb domain-containing protein n=1 Tax=Nannochlorop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14962contigP-wetherbeei_contig14962:4..1567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDU9
PFAMsChromo,FYRC,FYRN,Helicase_C,SNF2_N
Model size1005
Max annot lvl2759|Eukaryota
KEGG koko:K14436,ko:K14437
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.93e-19
EggNOG OGsCOG0553@1|root,KOG0384@2759|Eukaryota
EC3.6.4.12
Descriptionhelicase activity
Cds size1002
COG categoryKL
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186038.6841657-CDS-P-wetherbeei_contig14962:3..1411683186038.6841657-CDS-P-wetherbeei_contig14962:3..141Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14962 4..141 +
1683186038.6977205-CDS-P-wetherbeei_contig14962:404..11811683186038.6977205-CDS-P-wetherbeei_contig14962:404..1181Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14962 405..1181 +
1683186038.7092335-CDS-P-wetherbeei_contig14962:1479..15661683186038.7092335-CDS-P-wetherbeei_contig14962:1479..1566Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14962 1480..1566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14962.1.1prot_P-wetherbeei_contig14962.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14962 4..1566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14962.1.1

>prot_P-wetherbeei_contig14962.1.1 ID=prot_P-wetherbeei_contig14962.1.1|Name=mRNA_P-wetherbeei_contig14962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=334bp
GAEADRPHESEFVKHAMERALQLQREQPDTAANLPEVLTDDKFVEKLVGG
LGRRGLQRLDALQRLQVLMREAIEATITESPPIPAAAIAAASAASAAIAA
ARGKAVDTDALAAAGADPDAVVAGDGGDNGADGGTDVGGVPAAPMPGKRG
RKPAGFGGMAGPPSTNFTGMVTAQQVYDAAGGADGDMDAAVEALLPFGIG
QRLNLGTERPAWTRLAPWWDLEVDHDLILGVFLHGLGECGRIRQDPRLCF
ERKMRAYEAAAAAAVAMKQASSVAAEERAAWALAAAEADSRAQAAGGPSE
AGLVPVHGRVRSRYKGVYSQPGSYRWVTLAPMGG
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mRNA from alignment at P-wetherbeei_contig14962:4..1567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14962.1.1 ID=mRNA_P-wetherbeei_contig14962.1.1|Name=mRNA_P-wetherbeei_contig14962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1564bp|location=Sequence derived from alignment at P-wetherbeei_contig14962:4..1567+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGCCGAAGCGGACCGCCCCCACGAGAGCGAGTTTGTAAAGCACGCCAT
GGAGCGCGCCCTGCAGCTGCAGCGAGAGCAGCCAGACACCGCCGCCAACC
TCCCCGAGGTCCTCACCGACGACAAGTTCGTCGAGAAGGTGAGGAATATG
AGCGTTGAGGGAGGGAGGGAGGGAGGGAGGGAGATGTCAGTTCGTTGCTG
GAGTTAGTGGATCCCTCTGAAGGAGCGAGAGGTAGGCCAGTTTGAGTTGT
GAACGACGCAAGCAAGTGGCTAGAAATCTCCTTTCTTTTCCGCTTTCTGT
CTTTCTCACTGGGTCGCTACTCTCTTTAACGTCAAGTTCTCGTTCCCTTT
CCTTCTTCTTCTGTTCCTTTTTCTCTCCGTCAAACGACGGTCACTGCACA
GCTGGTGGGGGGGCTGGGCCGGCGCGGGTTGCAGCGGCTCGACGCCCTCC
AGCGGCTGCAGGTGCTGATGCGCGAAGCCATTGAGGCCACCATTACCGAG
TCGCCGCCCATCCCGGCCGCCGCAATCGCCGCCGCCTCCGCCGCCTCTGC
TGCAATCGCCGCCGCGCGTGGCAAGGCCGTCGACACCGACGCGCTCGCCG
CCGCGGGCGCCGACCCCGACGCGGTCGTCGCCGGTGACGGTGGCGACAAC
GGCGCCGACGGCGGCACCGACGTCGGCGGCGTTCCGGCGGCGCCCATGCC
CGGTAAGCGGGGCCGCAAGCCGGCGGGGTTCGGCGGGATGGCGGGGCCGC
CGTCGACGAACTTCACGGGCATGGTGACGGCGCAGCAGGTGTACGACGCG
GCGGGCGGCGCGGACGGTGACATGGACGCGGCCGTCGAGGCGCTGCTGCC
GTTCGGCATCGGCCAGCGCCTGAACCTCGGCACGGAGCGTCCGGCCTGGA
CCCGGCTGGCTCCGTGGTGGGACCTGGAGGTCGACCACGACCTGATCCTC
GGTGTGTTCCTGCACGGGCTCGGCGAGTGCGGCCGGATCCGGCAGGATCC
GCGGCTATGCTTCGAGCGCAAGATGCGGGCGTACGAGGCAGCGGCGGCGG
CGGCCGTGGCGATGAAGCAGGCGTCATCGGTGGCGGCGGAGGAGCGGGCG
GCGTGGGCGTTGGCGGCGGCGGAGGCGGATTCGCGCGCCCAGGCGGCCGG
AGGCCCCTCCGAGGCGGGCCTCGTGCCAGTGAGCACTTATTGTTGACTTA
GTTGTTTGTTTTTACTCCTTCTCTGAATGCGGTCCTTCTGGTGTCTTGAT
ACTCGATGCATTCAGTGCTTGGGATTTCCCTTCTGCCAGTTTGCTGTCCG
CTCCTTCCCCTTTACTCAATTTCAAATGTCACGCTCTCGTTGCTAACGTC
ACCCGACACCTACTTTTCTTTATCCATTTTGCGACAAATCGCTTTTGCGG
CGAATGGTGCTCATGGAACTCGTGACCAAACGGTGGTTACGGCAACATCA
CCCTGTATGCATTAAAATACCATCAGGTGCATGGGCGGGTGCGGAGCCGC
TACAAGGGCGTCTACTCGCAGCCCGGCAGCTACCGCTGGGTGACGCTGGC
GCCCATGGGTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14962:4..1567+

>mRNA_P-wetherbeei_contig14962.1.1 ID=mRNA_P-wetherbeei_contig14962.1.1|Name=mRNA_P-wetherbeei_contig14962.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig14962:4..1567+ (Phaeothamnion wetherbeei SAG_119_79)
GGTGCCGAAGCGGACCGCCCCCACGAGAGCGAGTTTGTAAAGCACGCCAT
GGAGCGCGCCCTGCAGCTGCAGCGAGAGCAGCCAGACACCGCCGCCAACC
TCCCCGAGGTCCTCACCGACGACAAGTTCGTCGAGAAGCTGGTGGGGGGG
CTGGGCCGGCGCGGGTTGCAGCGGCTCGACGCCCTCCAGCGGCTGCAGGT
GCTGATGCGCGAAGCCATTGAGGCCACCATTACCGAGTCGCCGCCCATCC
CGGCCGCCGCAATCGCCGCCGCCTCCGCCGCCTCTGCTGCAATCGCCGCC
GCGCGTGGCAAGGCCGTCGACACCGACGCGCTCGCCGCCGCGGGCGCCGA
CCCCGACGCGGTCGTCGCCGGTGACGGTGGCGACAACGGCGCCGACGGCG
GCACCGACGTCGGCGGCGTTCCGGCGGCGCCCATGCCCGGTAAGCGGGGC
CGCAAGCCGGCGGGGTTCGGCGGGATGGCGGGGCCGCCGTCGACGAACTT
CACGGGCATGGTGACGGCGCAGCAGGTGTACGACGCGGCGGGCGGCGCGG
ACGGTGACATGGACGCGGCCGTCGAGGCGCTGCTGCCGTTCGGCATCGGC
CAGCGCCTGAACCTCGGCACGGAGCGTCCGGCCTGGACCCGGCTGGCTCC
GTGGTGGGACCTGGAGGTCGACCACGACCTGATCCTCGGTGTGTTCCTGC
ACGGGCTCGGCGAGTGCGGCCGGATCCGGCAGGATCCGCGGCTATGCTTC
GAGCGCAAGATGCGGGCGTACGAGGCAGCGGCGGCGGCGGCCGTGGCGAT
GAAGCAGGCGTCATCGGTGGCGGCGGAGGAGCGGGCGGCGTGGGCGTTGG
CGGCGGCGGAGGCGGATTCGCGCGCCCAGGCGGCCGGAGGCCCCTCCGAG
GCGGGCCTCGTGCCAGTGCATGGGCGGGTGCGGAGCCGCTACAAGGGCGT
CTACTCGCAGCCCGGCAGCTACCGCTGGGTGACGCTGGCGCCCATGGGTG
GC
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